Lsi09G002500 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G002500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 2619331 .. 2619562 (+)
RNA-Seq ExpressionLsi09G002500
SyntenyLsi09G002500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTCTTGTAAGAAATAATACGACGCCGTTTCCACAAATTCCGAGACCCTCTACAACCCAGTACGACGTCGTACGTAGCACAATCCAAGCCCAAAACTGCGAAGGGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAAATCCAATACCCATAA

mRNA sequence

ATGGCAGAAATAATACGACGCCGTTTCCACAAATTCCGAGACCCTCTACAACCCAGTACGACGTCGTACGTAGCACAATCCAAGCCCAAAACTGCGAAGGGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAAATCCAATACCCATAA

Coding sequence (CDS)

ATGGCAGAAATAATACGACGCCGTTTCCACAAATTCCGAGACCCTCTACAACCCAGTACGACGTCGTACGTAGCACAATCCAAGCCCAAAACTGCGAAGGGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAAATCCAATACCCATAA

Protein sequence

MAEIIRRRFHKFRDPLQPSTTSYVAQSKPKTAKGNMELGQSEGKQPYNCLSVKLSSCKLAVHFAINQSKIQYP
Homology
BLAST of Lsi09G002500 vs. ExPASy TrEMBL
Match: A0A0A0KK84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G153050 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MAEIIRRRFHKFRDPLQPSTTSYVAQSKPKTAKGNMELGQSEGKQPYNCLSVKLSSCKLA 60
          +  +IRRRFHK+RDPL PSTTSY AQS+PKTAK NMELGQSEGKQPYNCLSVKLSSCKLA
Sbjct: 4  LVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSCKLA 63

Query: 61 VHFAINQSKIQYP 74
          VHF INQSKIQYP
Sbjct: 64 VHFVINQSKIQYP 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KK841.9e-2886.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G153050 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G002500.1Lsi09G002500.1mRNA