Lsi09G002290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G002290
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSnoaL-like domain-containing protein
Locationchr09: 2386357 .. 2388075 (-)
RNA-Seq ExpressionLsi09G002290
SyntenyLsi09G002290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGGACCCCACCCTTTTCTCTTTCTGCAGTGAATTAAAATAATAATGTCCCTAACTACAAATTCTCCTCCTCAAGCTGTCAACTTGAGGGGCTCCCAATCATCGAGAAGATTTTCCTGTACATCCTTGACTAAAAGAACCTCATGTATATTACAACAAAAGAACTATGGCAACTGCAAGTTGAGGAAAACAAACAACAGATTATCCACCGATGTTAAGCTTCATTTCGTCTCGTCGTGCTTAAAGGATGATTCCTTTTCCAGCTTAGATTCAAGTTCAAATTCTCCATCAGAAATCATTGAGAGATTCTACAAATGCATCAATGAAAAGAACTTGAAGGAATTGAGCAATTATATCTCAGAAGACTGCCTCATTGAAGACTCCTCGTTCATTGAACCATTTATAGGGAAGAAGGTAACAATGAGCTACTAGATATTTAAGTATTTCTGTTCTCATTCATACTGTTATGAACGTACAACACAAATCTGTTTTTACAAGTCCATGGAACCTACCTGCAGGCAGCTCTGAGTTTCTTTGAAGAACTAACTCAAAGCATGGGTCCAGATGTAAAGATTAAAGTTCATCACATTTACGAAATAGGGGCTTCCAGGGCAATAGCAATCTGGAATTTAGGTAATTCTATCTAGATCATCCCTCCAATTCATATTCTATCGTTCTAAAACATTGAGAAACCTAATTATCATTTGACAGAGTGGAAGAACATGGAGATTCCCTTATCCAAGGGTTGCACCTTCATTGACATCAGAAATGAAGAAAGAAAAACAATACAGTTAAGCATAAATAAACTCAGTACCTGATACTTTCAATTGTATTGAAAAGAAAAAAATAGATCTTAATCATATCAAATGCAACTCTTTTACAGGAAGGCACAAATTATAATTGAACCACAAATAAAAGCAGGACATCTAATCTTGGTAAGTATACAAGCCATCATTTCCAACAATGTCAAAGCATTCAACACTTAAAATTGAGTAAAATCATTCAATGCCCATTCAATTGAAATCAAAGTAAATTGTGTGTATTAACAAATGTTCAATTTGTTGGTCTGATGGGGCTTTTTCTGTAACTAATATCAGGCTATAATGAAGGTCGTGACTTTATTGCTTGCTACGTATCCAGCAATTCCAGAATGTAAGTTAAATTTAATACCTTATGCCATAGATCTCCGTGAGCAAAAGCTTCTTACTAAACATTAAAGATACATGAACTATGTCTCCTGTAGGGCTGATAAAAGTTTCTCAACAACGTTGGGTAATGTGGATGTCAAAGATCTGTATAATTCTCTTCAAGCGTCTCTTGGACAGCTTTTTGAAGAGCTATCTAACCTTCATACACTTTTGGGCTCAACTGTATATTAATGTACTCAAATTTTTACATCAAGTTATAAAGTCTTTCAAGTAAAGGATACATCATATACACACACAAAGCTTTATTCTATTCGTGGACATGGAAAAGATAGTACCCATACAAAACATCCCCTTCTAGTCATCATTTCCATCACGACTCAAATACGTTTCTAACAATGAGAAAACAGCCAATGGACCAAGAAGGGGAGGGAGTGGTGGAGGCTTACTGAACGCTGCAATTGGGTCTGCATCCTCTTTGATAACCACCGACTCTCCCTCAGAATCATTCTTCATTCCTTGCTTTTGTATTGATGAAGCCAGACTACCTAATTGTCATGAAATTGCAATGTAA

mRNA sequence

AAAGGACCCCACCCTTTTCTCTTTCTGCAGTGAATTAAAATAATAATGTCCCTAACTACAAATTCTCCTCCTCAAGCTGTCAACTTGAGGGGCTCCCAATCATCGAGAAGATTTTCCTGTACATCCTTGACTAAAAGAACCTCATGTATATTACAACAAAAGAACTATGGCAACTGCAAGTTGAGGAAAACAAACAACAGATTATCCACCGATGTTAAGCTTCATTTCGTCTCGTCGTGCTTAAAGGATGATTCCTTTTCCAGCTTAGATTCAAGTTCAAATTCTCCATCAGAAATCATTGAGAGATTCTACAAATGCATCAATGAAAAGAACTTGAAGGAATTGAGCAATTATATCTCAGAAGACTGCCTCATTGAAGACTCCTCGTTCATTGAACCATTTATAGGGAAGAAGGCAGCTCTGAGTTTCTTTGAAGAACTAACTCAAAGCATGGGTCCAGATGTAAAGATTAAAGTTCATCACATTTACGAAATAGGGGCTTCCAGGGCAATAGCAATCTGGAATTTAGAGTGGAAGAACATGGAGATTCCCTTATCCAAGGGTTGCACCTTCATTGACATCAGAAATGAAGAAAGAAAAACAATACAGAAGGCACAAATTATAATTGAACCACAAATAAAAGCAGGACATCTAATCTTGGTAAGTATACAAGCCATCATTTCCAACAATGCTATAATGAAGGTCGTGACTTTATTGCTTGCTACGTATCCAGCAATTCCAGAATGGCTGATAAAAGTTTCTCAACAACGTTGGGTAATGTGGATGTCAAAGATCTGTATAATTCTCTTCAAGCGTCTCTTGGACAGCTTTTTGAAGAGCTATCTAACCTTCATACACTTTTGGGCTCAACTGTATATTAATTCATCATTTCCATCACGACTCAAATACGTTTCTAACAATGAGAAAACAGCCAATGGACCAAGAAGGGGAGGGAGTGGTGGAGGCTTACTGAACGCTGCAATTGGGTCTGCATCCTCTTTGATAACCACCGACTCTCCCTCAGAATCATTCTTCATTCCTTGCTTTTGTATTGATGAAGCCAGACTACCTAATTGTCATGAAATTGCAATGTAA

Coding sequence (CDS)

ATGTCCCTAACTACAAATTCTCCTCCTCAAGCTGTCAACTTGAGGGGCTCCCAATCATCGAGAAGATTTTCCTGTACATCCTTGACTAAAAGAACCTCATGTATATTACAACAAAAGAACTATGGCAACTGCAAGTTGAGGAAAACAAACAACAGATTATCCACCGATGTTAAGCTTCATTTCGTCTCGTCGTGCTTAAAGGATGATTCCTTTTCCAGCTTAGATTCAAGTTCAAATTCTCCATCAGAAATCATTGAGAGATTCTACAAATGCATCAATGAAAAGAACTTGAAGGAATTGAGCAATTATATCTCAGAAGACTGCCTCATTGAAGACTCCTCGTTCATTGAACCATTTATAGGGAAGAAGGCAGCTCTGAGTTTCTTTGAAGAACTAACTCAAAGCATGGGTCCAGATGTAAAGATTAAAGTTCATCACATTTACGAAATAGGGGCTTCCAGGGCAATAGCAATCTGGAATTTAGAGTGGAAGAACATGGAGATTCCCTTATCCAAGGGTTGCACCTTCATTGACATCAGAAATGAAGAAAGAAAAACAATACAGAAGGCACAAATTATAATTGAACCACAAATAAAAGCAGGACATCTAATCTTGGTAAGTATACAAGCCATCATTTCCAACAATGCTATAATGAAGGTCGTGACTTTATTGCTTGCTACGTATCCAGCAATTCCAGAATGGCTGATAAAAGTTTCTCAACAACGTTGGGTAATGTGGATGTCAAAGATCTGTATAATTCTCTTCAAGCGTCTCTTGGACAGCTTTTTGAAGAGCTATCTAACCTTCATACACTTTTGGGCTCAACTGTATATTAATTCATCATTTCCATCACGACTCAAATACGTTTCTAACAATGAGAAAACAGCCAATGGACCAAGAAGGGGAGGGAGTGGTGGAGGCTTACTGAACGCTGCAATTGGGTCTGCATCCTCTTTGATAACCACCGACTCTCCCTCAGAATCATTCTTCATTCCTTGCTTTTGTATTGATGAAGCCAGACTACCTAATTGTCATGAAATTGCAATGTAA

Protein sequence

MSLTTNSPPQAVNLRGSQSSRRFSCTSLTKRTSCILQQKNYGNCKLRKTNNRLSTDVKLHFVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFIGKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIRNEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKVSQQRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLYINSSFPSRLKYVSNNEKTANGPRRGGSGGGLLNAAIGSASSLITTDSPSESFFIPCFCIDEARLPNCHEIAM
Homology
BLAST of Lsi09G002290 vs. ExPASy TrEMBL
Match: A0A0A0KMI4 (SnoaL-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152840 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 2.0e-107
Identity = 226/316 (71.52%), Postives = 243/316 (76.90%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSC-TSLTKRTSCILQQ-KNYGNCKLRKTNNRLSTDVK 60
           MSL T+  PQAVN  GSQS RRFS  T L KRTSCI QQ KNYGN   RKTNN L     
Sbjct: 1   MSLITS--PQAVNFGGSQSFRRFSSYTFLNKRTSCIFQQKKNYGNYNKRKTNNTL----- 60

Query: 61  LHFVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEP 120
              V SCL DDSFS   SSSNSP E+IERFYKCINEKNLKE+S YISEDCLIEDS FIE 
Sbjct: 61  ---VLSCLMDDSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEK 120

Query: 121 FIGKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFID 180
           F GKKAA+SF E+LT+SMGPDVK ++  +YE   S A AIW+LEW+NMEIPL+KGCTFID
Sbjct: 121 FKGKKAAMSFIEKLTESMGPDVKFRIRKVYERHPSMAGAIWHLEWRNMEIPLTKGCTFID 180

Query: 181 IRNEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKV 240
           IR+EERKTIQK QII EPQ KAGHLIL           IMK+VTLLLA   AI EWLIK 
Sbjct: 181 IRDEERKTIQKIQIINEPQFKAGHLIL----------DIMKLVTLLLAKNSAILEWLIKA 240

Query: 241 SQQRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLYINSSFPSRLKYVSNNEKTANG 300
           SQQRWV WMSKIC+ LF  LLDSF KSYLTFIHF AQLY  SSFPSR+KY+SN EKTANG
Sbjct: 241 SQQRWVKWMSKICVTLFNLLLDSFSKSYLTFIHFGAQLYSCSSFPSRVKYISNEEKTANG 296

Query: 301 PRRGGSGGGLLNAAIG 315
           PR GGSGGGLLNA IG
Sbjct: 301 PRMGGSGGGLLNATIG 296

BLAST of Lsi09G002290 vs. ExPASy TrEMBL
Match: A0A1S3ATV9 (uncharacterized protein LOC103482777 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482777 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 6.6e-87
Identity = 190/279 (68.10%), Postives = 210/279 (75.27%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSCT-SLTKRTSCILQQ-KNYGNCKLRKTNNRLSTDVK 60
           MSL T+  PQAVN  GS S RRFS T  L KRTSCI QQ KNYGN   RKTN RL     
Sbjct: 1   MSLITS--PQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRL----- 60

Query: 61  LHFVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEP 120
              VSSCL DDSFS   SSSNSP E+IE FYKCINEKNLK+++ YISEDCLIEDS FIE 
Sbjct: 61  ---VSSCLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEK 120

Query: 121 FIGKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFID 180
           F GKKAA+SF E+LT+SMGPDVK ++  +YE   S A AIW+LEW+NMEIPL+KGCTFID
Sbjct: 121 FKGKKAAMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHLEWRNMEIPLTKGCTFID 180

Query: 181 IRNEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKV 240
           IR+EERKTIQ  QII E Q+KAGHL L          AIMK+VTLLLA +PAI EWL KV
Sbjct: 181 IRDEERKTIQMVQIITESQLKAGHLFL----------AIMKLVTLLLAKHPAILEWLTKV 240

Query: 241 SQQRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLY 278
           SQQRWV  +SKICI LFK LLD+FLKSYLTFIH   QLY
Sbjct: 241 SQQRWVKRISKICIFLFKHLLDNFLKSYLTFIHLGTQLY 259

BLAST of Lsi09G002290 vs. ExPASy TrEMBL
Match: A0A6J1I4H1 (uncharacterized protein LOC111469081 OS=Cucurbita maxima OX=3661 GN=LOC111469081 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 9.8e-83
Identity = 171/278 (61.51%), Postives = 212/278 (76.26%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSCTSLTKRTSCILQQKNYGNCKLRKTNNRLSTDVKLH 60
           M+L T+ PPQA+ L GSQ  R F+ TS+ K+ S + QQK     KLRKT+  L TDVK  
Sbjct: 1   MALITSPPPQALTL-GSQPFRTFAYTSIPKKPSSLFQQK-----KLRKTSYTLVTDVKPR 60

Query: 61  FVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFI 120
           FV SCLKD S  SLDS SNSPSE++++FY+CINEK LKELS+YISEDCLIEDS F E FI
Sbjct: 61  FVLSCLKDGSVCSLDSCSNSPSEMVKKFYECINEKKLKELSSYISEDCLIEDSLFDEAFI 120

Query: 121 GKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIR 180
           GK+AAL FF+ELTQSMGPDVK +  ++YE G SRA A W+L WKN +IP +KGCTFIDI 
Sbjct: 121 GKEAALKFFKELTQSMGPDVKFRFRNVYESGTSRAGATWHLVWKNTKIPFTKGCTFIDIN 180

Query: 181 NEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKVSQ 240
           NEER TIQKAQII+EPQ+KAGHLIL           +MK+VT LLA YPAI +W++K+SQ
Sbjct: 181 NEER-TIQKAQIIMEPQVKAGHLIL----------GMMKLVTSLLAQYPAIHKWVMKLSQ 240

Query: 241 QRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLYI 279
           QRWV W++KIC++L+K  L S ++SYLTFIH  + +++
Sbjct: 241 QRWVRWLAKICVVLYKFFLHSLMRSYLTFIHCGSLMFV 261

BLAST of Lsi09G002290 vs. ExPASy TrEMBL
Match: A0A6J1ELY0 (uncharacterized protein LOC111435747 OS=Cucurbita moschata OX=3662 GN=LOC111435747 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 170/278 (61.15%), Postives = 211/278 (75.90%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSCTSLTKRTSCILQQKNYGNCKLRKTNNRLSTDVKLH 60
           M+L T+ PPQA+ L GSQ  R F+ TS+ KR S + QQK     KLRKT+  L+TDVK  
Sbjct: 1   MALITSPPPQALTL-GSQPFRTFAYTSIPKRPSYLFQQK-----KLRKTSYTLATDVKPR 60

Query: 61  FVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFI 120
           FVSSCLKD S  SLDS SNSPSE++++ Y+CINEK LKELS+Y+SEDCLIEDS F E FI
Sbjct: 61  FVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFI 120

Query: 121 GKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIR 180
           GK+AAL FF+ELTQSMGPDVK +  ++YE GASRA   W+L WKN +IP +KGCTFI I 
Sbjct: 121 GKEAALKFFKELTQSMGPDVKFRFRNVYESGASRAGVTWHLVWKNTKIPFTKGCTFIHIN 180

Query: 181 NEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKVSQ 240
           NE+R TIQKAQIIIEPQ+KAGHLIL           +MK+VT LLA YPAI +W++K+SQ
Sbjct: 181 NEQR-TIQKAQIIIEPQVKAGHLIL----------GMMKLVTSLLAQYPAIHKWVMKLSQ 240

Query: 241 QRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLYI 279
           QRWV W++KIC++L+   L S L+SYLTFIH  + +++
Sbjct: 241 QRWVRWVAKICVLLYNFFLHSLLRSYLTFIHCASLMFV 261

BLAST of Lsi09G002290 vs. ExPASy TrEMBL
Match: A0A6J1DVV2 (uncharacterized protein LOC111023569 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023569 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 4.7e-77
Identity = 165/278 (59.35%), Postives = 203/278 (73.02%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSCTSLTKRTSCILQQK-----NYGNCKLRKTNNRLST 60
           M+L  + PP ++   GSQS R    T+L K +SC+ QQK      YG+  +RKTN R ST
Sbjct: 1   MALIRSPPPISL---GSQSFRNLPYTALPKISSCVFQQKKTTVLKYGDW-MRKTNKRSST 60

Query: 61  DVKLHFVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSF 120
           DVKL FV SCL DDS S LDS+SN  SE+IE FY+CINEKNL+EL +YISEDC+IEDS F
Sbjct: 61  DVKLRFVPSCLPDDSDSCLDSNSNPSSEMIENFYRCINEKNLEELGSYISEDCVIEDSLF 120

Query: 121 IEPFIGKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCT 180
           IEPF G+K AL FFEELTQSMG  VK ++ ++YE G S A AIW L WK++EIP SKGCT
Sbjct: 121 IEPFQGRKEALEFFEELTQSMGRYVKFRILNVYESGTSGAGAIWRLAWKDIEIPFSKGCT 180

Query: 181 FIDIRNEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWL 240
           FI+IRNE+R+ IQKAQII+EPQ+KAGH IL          A++K+VT LL T+PAIPEWL
Sbjct: 181 FINIRNEKRRAIQKAQIIVEPQVKAGHFIL----------ALLKLVTSLLDTFPAIPEWL 240

Query: 241 IKVSQQRWVMWMSKICIILFKRLLDSFLKSYLTFIHFW 274
           +K+ Q  WV W+SKICI LF  L +SFL+S L F + +
Sbjct: 241 LKLFQLPWVKWLSKICIKLFTLLWESFLESLLAFKYLY 264

BLAST of Lsi09G002290 vs. NCBI nr
Match: XP_038906943.1 (uncharacterized protein LOC120092809 [Benincasa hispida])

HSP 1 Score: 433.7 bits (1114), Expect = 1.5e-117
Identity = 227/273 (83.15%), Postives = 239/273 (87.55%), Query Frame = 0

Query: 8   PPQAVNLRGSQSSRRFSCTSLTKRTSCILQQ-KNYGNCKLRKTNNRLSTDVKLHFVSSCL 67
           PPQAVNL GSQS RRFSCT LTKR+SCILQQ KNYGNCK +KTNNRLSTDVKLHFVSSCL
Sbjct: 9   PPQAVNLGGSQSLRRFSCTFLTKRSSCILQQKKNYGNCKKKKTNNRLSTDVKLHFVSSCL 68

Query: 68  KDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFIGKKAAL 127
           KDDSFS LDS SNSPSE+IERFYKCINEKNLKELS+YISEDC IEDS F+EPFIGKKAAL
Sbjct: 69  KDDSFSRLDSRSNSPSEMIERFYKCINEKNLKELSSYISEDCHIEDSLFVEPFIGKKAAL 128

Query: 128 SFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIRNEERKT 187
            FFEELT SMGPDVK ++H+IYE   S   AIW+LEWKNMEIP +KGCTFIDIRNEERKT
Sbjct: 129 RFFEELTHSMGPDVKFRIHNIYERRVSSVGAIWHLEWKNMEIPFTKGCTFIDIRNEERKT 188

Query: 188 IQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKVSQQRWVMW 247
           IQKAQIIIEPQIKAGHLIL          AIMK+VTLLLA YPAIPEWLIKVSQQRWV W
Sbjct: 189 IQKAQIIIEPQIKAGHLIL----------AIMKLVTLLLAKYPAIPEWLIKVSQQRWVKW 248

Query: 248 MSKICIILFKRLLDSFLKSYLTFIHFWAQLYIN 280
           MSKICIILFK LLDSFLKSYLTFIHF A+LY N
Sbjct: 249 MSKICIILFKLLLDSFLKSYLTFIHFGAELYSN 271

BLAST of Lsi09G002290 vs. NCBI nr
Match: XP_011654728.2 (uncharacterized protein LOC101214565 [Cucumis sativus] >KAE8647850.1 hypothetical protein Csa_000137 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 5.9e-90
Identity = 196/279 (70.25%), Postives = 211/279 (75.63%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSC-TSLTKRTSCILQQ-KNYGNCKLRKTNNRLSTDVK 60
           MSL T+  PQAVN  GSQS RRFS  T L KRTSCI QQ KNYGN   RKTNN L     
Sbjct: 1   MSLITS--PQAVNFGGSQSFRRFSSYTFLNKRTSCIFQQKKNYGNYNKRKTNNTL----- 60

Query: 61  LHFVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEP 120
              V SCL DDSFS   SSSNSP E+IERFYKCINEKNLKE+S YISEDCLIEDS FIE 
Sbjct: 61  ---VLSCLMDDSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEK 120

Query: 121 FIGKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFID 180
           F GKKAA+SF E+LT+SMGPDVK ++  +YE   S A AIW+LEW+NMEIPL+KGCTFID
Sbjct: 121 FKGKKAAMSFIEKLTESMGPDVKFRIRKVYERHPSMAGAIWHLEWRNMEIPLTKGCTFID 180

Query: 181 IRNEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKV 240
           IR+EERKTIQK QII EPQ KAGHLIL           IMK+VTLLLA   AI EWLIK 
Sbjct: 181 IRDEERKTIQKIQIINEPQFKAGHLIL----------DIMKLVTLLLAKNSAILEWLIKA 240

Query: 241 SQQRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLY 278
           SQQRWV WMSKIC+ LF  LLDSF KSYLTFIHF AQLY
Sbjct: 241 SQQRWVKWMSKICVTLFNLLLDSFSKSYLTFIHFGAQLY 259

BLAST of Lsi09G002290 vs. NCBI nr
Match: XP_008437322.1 (PREDICTED: uncharacterized protein LOC103482777 isoform X1 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 1.4e-86
Identity = 190/279 (68.10%), Postives = 210/279 (75.27%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSCT-SLTKRTSCILQQ-KNYGNCKLRKTNNRLSTDVK 60
           MSL T+  PQAVN  GS S RRFS T  L KRTSCI QQ KNYGN   RKTN RL     
Sbjct: 1   MSLITS--PQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNVRL----- 60

Query: 61  LHFVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEP 120
              VSSCL DDSFS   SSSNSP E+IE FYKCINEKNLK+++ YISEDCLIEDS FIE 
Sbjct: 61  ---VSSCLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEK 120

Query: 121 FIGKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFID 180
           F GKKAA+SF E+LT+SMGPDVK ++  +YE   S A AIW+LEW+NMEIPL+KGCTFID
Sbjct: 121 FKGKKAAMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHLEWRNMEIPLTKGCTFID 180

Query: 181 IRNEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKV 240
           IR+EERKTIQ  QII E Q+KAGHL L          AIMK+VTLLLA +PAI EWL KV
Sbjct: 181 IRDEERKTIQMVQIITESQLKAGHLFL----------AIMKLVTLLLAKHPAILEWLTKV 240

Query: 241 SQQRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLY 278
           SQQRWV  +SKICI LFK LLD+FLKSYLTFIH   QLY
Sbjct: 241 SQQRWVKRISKICIFLFKHLLDNFLKSYLTFIHLGTQLY 259

BLAST of Lsi09G002290 vs. NCBI nr
Match: XP_022970084.1 (uncharacterized protein LOC111469081 [Cucurbita maxima])

HSP 1 Score: 317.0 bits (811), Expect = 2.0e-82
Identity = 171/278 (61.51%), Postives = 212/278 (76.26%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSCTSLTKRTSCILQQKNYGNCKLRKTNNRLSTDVKLH 60
           M+L T+ PPQA+ L GSQ  R F+ TS+ K+ S + QQK     KLRKT+  L TDVK  
Sbjct: 1   MALITSPPPQALTL-GSQPFRTFAYTSIPKKPSSLFQQK-----KLRKTSYTLVTDVKPR 60

Query: 61  FVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFI 120
           FV SCLKD S  SLDS SNSPSE++++FY+CINEK LKELS+YISEDCLIEDS F E FI
Sbjct: 61  FVLSCLKDGSVCSLDSCSNSPSEMVKKFYECINEKKLKELSSYISEDCLIEDSLFDEAFI 120

Query: 121 GKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIR 180
           GK+AAL FF+ELTQSMGPDVK +  ++YE G SRA A W+L WKN +IP +KGCTFIDI 
Sbjct: 121 GKEAALKFFKELTQSMGPDVKFRFRNVYESGTSRAGATWHLVWKNTKIPFTKGCTFIDIN 180

Query: 181 NEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKVSQ 240
           NEER TIQKAQII+EPQ+KAGHLIL           +MK+VT LLA YPAI +W++K+SQ
Sbjct: 181 NEER-TIQKAQIIMEPQVKAGHLIL----------GMMKLVTSLLAQYPAIHKWVMKLSQ 240

Query: 241 QRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLYI 279
           QRWV W++KIC++L+K  L S ++SYLTFIH  + +++
Sbjct: 241 QRWVRWLAKICVVLYKFFLHSLMRSYLTFIHCGSLMFV 261

BLAST of Lsi09G002290 vs. NCBI nr
Match: XP_022929026.1 (uncharacterized protein LOC111435747 [Cucurbita moschata])

HSP 1 Score: 312.8 bits (800), Expect = 3.8e-81
Identity = 170/278 (61.15%), Postives = 211/278 (75.90%), Query Frame = 0

Query: 1   MSLTTNSPPQAVNLRGSQSSRRFSCTSLTKRTSCILQQKNYGNCKLRKTNNRLSTDVKLH 60
           M+L T+ PPQA+ L GSQ  R F+ TS+ KR S + QQK     KLRKT+  L+TDVK  
Sbjct: 1   MALITSPPPQALTL-GSQPFRTFAYTSIPKRPSYLFQQK-----KLRKTSYTLATDVKPR 60

Query: 61  FVSSCLKDDSFSSLDSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFI 120
           FVSSCLKD S  SLDS SNSPSE++++ Y+CINEK LKELS+Y+SEDCLIEDS F E FI
Sbjct: 61  FVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFI 120

Query: 121 GKKAALSFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIR 180
           GK+AAL FF+ELTQSMGPDVK +  ++YE GASRA   W+L WKN +IP +KGCTFI I 
Sbjct: 121 GKEAALKFFKELTQSMGPDVKFRFRNVYESGASRAGVTWHLVWKNTKIPFTKGCTFIHIN 180

Query: 181 NEERKTIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKVSQ 240
           NE+R TIQKAQIIIEPQ+KAGHLIL           +MK+VT LLA YPAI +W++K+SQ
Sbjct: 181 NEQR-TIQKAQIIIEPQVKAGHLIL----------GMMKLVTSLLAQYPAIHKWVMKLSQ 240

Query: 241 QRWVMWMSKICIILFKRLLDSFLKSYLTFIHFWAQLYI 279
           QRWV W++KIC++L+   L S L+SYLTFIH  + +++
Sbjct: 241 QRWVRWVAKICVLLYNFFLHSLLRSYLTFIHCASLMFV 261

BLAST of Lsi09G002290 vs. TAIR 10
Match: AT5G41470.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-24
Identity = 72/213 (33.80%), Postives = 116/213 (54.46%), Query Frame = 0

Query: 72  SSLDSSSNSPSEI-----IERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFIGKKAAL 131
           S LD  ++ P++I     + +FY  INEKN  +LS+ IS DC I+D SF +PF GK+ A+
Sbjct: 61  SCLDRPNSRPNQISGYDAVMKFYSSINEKNQDQLSSCISSDCFIDDFSFPKPFRGKQEAM 120

Query: 132 SFFEELTQSMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIRNE-ERK 191
            FFEEL +SMG +VK  V ++ E     A   W+LEWK  +IP ++GC+F +  +E  R 
Sbjct: 121 EFFEELVKSMGQNVKFCVENVCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEFIDEGGRL 180

Query: 192 TIQKAQIIIEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPEWLIKVSQQRWVM 251
            I+ A+I+IE  IK G + L          +++K +T L   +P   E  ++      + 
Sbjct: 181 VIRNARILIESPIKPGGITL----------SLLKNITFLFDEFPKGAELFLE-KPYAIIQ 240

Query: 252 WMSKICIILFKRLLDSFLKSYLTFIHFWAQLYI 279
              +I  +    L++  + SYL  +   A+ ++
Sbjct: 241 AAIRIYGLFLAPLINHVMASYLKLLSNMAEFFL 262

BLAST of Lsi09G002290 vs. TAIR 10
Match: AT1G71480.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-18
Identity = 50/160 (31.25%), Postives = 84/160 (52.50%), Query Frame = 0

Query: 75  DSSSNSPSEIIERFYKCINEKNLKELSNYISEDCLIEDSSFIEPFIGKKAALSFFEELTQ 134
           +++  S SE++  FY  +N  +L  +++ I++DC+ ED  F  PF+G+KA L FF +  +
Sbjct: 65  ETAPTSASEVVSSFYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDFFGKFIE 124

Query: 135 SMGPDVKIKVHHIYEIGASRAIAIWNLEWKNMEIPLSKGCTFIDIR-NEERKTIQKAQII 194
           S   D++  +  I    +S     W+LEWK    P SKGC+F  +   + ++ I   +  
Sbjct: 125 STSTDLQFVIDDISTEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDGKRQIVYGRDC 184

Query: 195 IEPQIKAGHLILVSIQAIISNNAIMKVVTLLLATYPAIPE 234
           +EP IK G  +L +I          K VT LL  +P + +
Sbjct: 185 VEPAIKPGETVLAAI----------KGVTWLLQKFPQLAD 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KMI42.0e-10771.52SnoaL-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152840 ... [more]
A0A1S3ATV96.6e-8768.10uncharacterized protein LOC103482777 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1I4H19.8e-8361.51uncharacterized protein LOC111469081 OS=Cucurbita maxima OX=3661 GN=LOC111469081... [more]
A0A6J1ELY01.8e-8161.15uncharacterized protein LOC111435747 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1DVV24.7e-7759.35uncharacterized protein LOC111023569 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
XP_038906943.11.5e-11783.15uncharacterized protein LOC120092809 [Benincasa hispida][more]
XP_011654728.25.9e-9070.25uncharacterized protein LOC101214565 [Cucumis sativus] >KAE8647850.1 hypothetica... [more]
XP_008437322.11.4e-8668.10PREDICTED: uncharacterized protein LOC103482777 isoform X1 [Cucumis melo][more]
XP_022970084.12.0e-8261.51uncharacterized protein LOC111469081 [Cucurbita maxima][more]
XP_022929026.13.8e-8161.15uncharacterized protein LOC111435747 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G41470.12.7e-2433.80Nuclear transport factor 2 (NTF2) family protein [more]
AT1G71480.11.3e-1831.25Nuclear transport factor 2 (NTF2) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.50coord: 71..186
e-value: 2.2E-11
score: 45.6
NoneNo IPR availablePANTHERPTHR33698NUCLEAR TRANSPORT FACTOR 2 (NTF2)-LIKE PROTEINcoord: 18..277
NoneNo IPR availablePANTHERPTHR33698:SF1NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEINcoord: 18..277
IPR037401SnoaL-like domainPFAMPF12680SnoaL_2coord: 85..181
e-value: 8.4E-7
score: 29.5
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 82..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G002290.1Lsi09G002290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane