Lsi09G002090 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G002090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	late embryogenesis abundant protein At1g64065
Location	chr09: 2168603 .. 2169217 (-)
RNA-Seq Expression	Lsi09G002090
Synteny	Lsi09G002090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCGACGAAATTCCCGGCTACCGGCCGGCGAAACTCCGATCAAGGCGCAAAGCATCAGAAAAATGCCTAAACACCTTCTGCATTTGCCTCTTCGCCGCTGCCGCCGTCGCCTGCATCACCGCCCTGACTCTCGGCCTCATCGTCCTTCGAGTAAAAATCCCGACAGTAAAATTAACCTCCGTCGTGTTAAAAAATCTCCACTACGGCTTCTCGCCGACCCCTTTCATGGAGGCCACATTAATCGGGGAAATAACAATAGAAAATCCGAATTTCGGGGAGTTCAAGTACGAGGAAATAAGGAACGTGACATTGATTTACTACGGCGTGGCGGTGGGAATCGGCGAGGTGAAAAAAGTGGGTGTAAATGCGAAGAGTACTGAAAAAACGAAGTTTAGAGTGAAAGTGAAACCGAATTCGAGCTTTGTTAATGTGGATTACTTCAGCGATGATTTGGCGAGGTTGAAGACGATGAATATGAGTTGCATCACCGAGTTTGAGGGAAGGGTTCGTTTGTTGAAATTGTTTAAAGAGAAGAAAATTTCTGTGTTGAAATGTACTATGAGCTTGAATTTGACCTCCCATGGCGTCCAAAATCTTGCTTGTCTATAG

mRNA sequence

ATGGCGGCCGACGAAATTCCCGGCTACCGGCCGGCGAAACTCCGATCAAGGCGCAAAGCATCAGAAAAATGCCTAAACACCTTCTGCATTTGCCTCTTCGCCGCTGCCGCCGTCGCCTGCATCACCGCCCTGACTCTCGGCCTCATCGTCCTTCGAGTAAAAATCCCGACAGTAAAATTAACCTCCGTCGTGTTAAAAAATCTCCACTACGGCTTCTCGCCGACCCCTTTCATGGAGGCCACATTAATCGGGGAAATAACAATAGAAAATCCGAATTTCGGGGAGTTCAAGTACGAGGAAATAAGGAACGTGACATTGATTTACTACGGCGTGGCGGTGGGAATCGGCGAGGTGAAAAAAGTGGGTGTAAATGCGAAGAGTACTGAAAAAACGAAGTTTAGAGTGAAAGTGAAACCGAATTCGAGCTTTGTTAATGTGGATTACTTCAGCGATGATTTGGCGAGGTTGAAGACGATGAATATGAGTTGCATCACCGAGTTTGAGGGAAGGGTTCGTTTGTTGAAATTGTTTAAAGAGAAGAAAATTTCTGTGTTGAAATGTACTATGAGCTTGAATTTGACCTCCCATGGCGTCCAAAATCTTGCTTGTCTATAG

Coding sequence (CDS)

ATGGCGGCCGACGAAATTCCCGGCTACCGGCCGGCGAAACTCCGATCAAGGCGCAAAGCATCAGAAAAATGCCTAAACACCTTCTGCATTTGCCTCTTCGCCGCTGCCGCCGTCGCCTGCATCACCGCCCTGACTCTCGGCCTCATCGTCCTTCGAGTAAAAATCCCGACAGTAAAATTAACCTCCGTCGTGTTAAAAAATCTCCACTACGGCTTCTCGCCGACCCCTTTCATGGAGGCCACATTAATCGGGGAAATAACAATAGAAAATCCGAATTTCGGGGAGTTCAAGTACGAGGAAATAAGGAACGTGACATTGATTTACTACGGCGTGGCGGTGGGAATCGGCGAGGTGAAAAAAGTGGGTGTAAATGCGAAGAGTACTGAAAAAACGAAGTTTAGAGTGAAAGTGAAACCGAATTCGAGCTTTGTTAATGTGGATTACTTCAGCGATGATTTGGCGAGGTTGAAGACGATGAATATGAGTTGCATCACCGAGTTTGAGGGAAGGGTTCGTTTGTTGAAATTGTTTAAAGAGAAGAAAATTTCTGTGTTGAAATGTACTATGAGCTTGAATTTGACCTCCCATGGCGTCCAAAATCTTGCTTGTCTATAG

Protein sequence

MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKLTSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKKVGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEKKISVLKCTMSLNLTSHGVQNLACL

Homology

[Close]

BLAST of Lsi09G002090 vs. ExPASy Swiss-Prot
Match: Q6DST1 (Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN=At1g64065 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-12
Identity = 62/192 (32.29%), Postives = 97/192 (50.52%), Query Frame = 0


Query: 17  RRKASE---KCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKLTSVVLKNLHYGFS 76
           RRK  E   KCL  + + +       C   L L  I LR+  P ++  S+  ++L  G +
Sbjct: 29  RRKTEEPPGKCL-VYSLTIIVIIFALC---LILSSIFLRISKPEIETRSISTRDLRSGGN 88

Query: 77  PT-PFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKKVGVNAKSTEKTK 136
            T P+  ATL+ +I+I N NFG F++E+   + ++Y    V +GE K  G   ++ +  +
Sbjct: 89  STNPYFNATLVSDISIRNSNFGAFEFED-STLRVVYADHGV-VGETKIEGRRVEAHKTVR 148

Query: 137 FRVKVKPNSSFVNVDYFS-DDLARLKTMNMSCITEFEGRVRLLKLFKEKKISVLKCTMSL 196
               V    SF  +D    D   RL  + +  + E  GR+++L   K  K+SV+ CTM L
Sbjct: 149 ITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAEVRGRIKVLGR-KRWKVSVMSCTMRL 208

Query: 197 NLTSHGVQNLAC 204
           NLT   +QNL C
Sbjct: 209 NLTGRFIQNLLC 213

[Close]

BLAST of Lsi09G002090 vs. ExPASy TrEMBL
Match: A0A6J1EM85 (late embryogenesis abundant protein At1g64065 OS=Cucurbita moschata OX=3662 GN=LOC111435804 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 167/203 (82.27%), Postives = 180/203 (88.67%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAA E P  RPA LRSRRKASEKC+NTFCI LFA AAVACI AL LGL+V+RVK PTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFM+ATLI EIT+ENPNFGEFKYEE+ N TLIYYGVAVGIGEVK 
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           V VNAKS +K  F+VKVKPNSSFV+VDYFS DLA LKTMNMSCI EF+GRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKKANFKVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLAC 204
           K+S+LKCTMSLNL SHGVQNLAC
Sbjct: 181 KVSMLKCTMSLNLNSHGVQNLAC 203

[Close]

BLAST of Lsi09G002090 vs. ExPASy TrEMBL
Match: A0A6J1I1W2 (late embryogenesis abundant protein At1g64065 OS=Cucurbita maxima OX=3661 GN=LOC111469093 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.0e-85
Identity = 166/203 (81.77%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAA E P  RPA LRSRRKASEKC+NTFCI LFA AAVACI AL LGL+V+RVK PTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFM+ATLI EIT+ENPNFGEFKYEE+ N TLIYYGVAVGIGEVK 
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           V VNAKS +   F VKVKPNSSFV+VDYFS DLA LKTMNMSCI EF+GRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLAC 204
           K+S+LKCTMSLNL+SHGVQNLAC
Sbjct: 181 KVSMLKCTMSLNLSSHGVQNLAC 203

[Close]

BLAST of Lsi09G002090 vs. ExPASy TrEMBL
Match: A0A5A7TMT1 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002130 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.8e-84
Identity = 164/204 (80.39%), Postives = 179/204 (87.75%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAAD+IPG RP   RSRRK+S+KCLN FCICLFAAAA ACI ALT GL+VLRVK PTVKL
Sbjct: 1   MAADKIPGDRPTAHRSRRKSSKKCLNAFCICLFAAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFMEATL GEIT+ENPN+G F+YE +RNVTLIYYGV VGIGEVK+
Sbjct: 61  TSVAVKNLHYGFSPTPFMEATLTGEITMENPNYGAFEYEGVRNVTLIYYGVVVGIGEVKR 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           + VNAKS EK KF VKVKPN  FVNVDYFSDDLARLKTMNMS   EFEG++ LLKLFKEK
Sbjct: 121 LSVNAKSIEKRKFIVKVKPNWRFVNVDYFSDDLARLKTMNMSWNAEFEGKIYLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLACL 205
           KISV+KC+ SLNLTSHGVQNLACL
Sbjct: 181 KISVMKCSTSLNLTSHGVQNLACL 204

[Close]

BLAST of Lsi09G002090 vs. ExPASy TrEMBL
Match: A0A1S3AUE7 (late embryogenesis abundant protein At1g64065 OS=Cucumis melo OX=3656 GN=LOC103482795 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.8e-84
Identity = 164/204 (80.39%), Postives = 179/204 (87.75%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAAD+IPG RP   RSRRK+S+KCLN FCICLFAAAA ACI ALT GL+VLRVK PTVKL
Sbjct: 1   MAADKIPGDRPTAHRSRRKSSKKCLNAFCICLFAAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFMEATL GEIT+ENPN+G F+YE +RNVTLIYYGV VGIGEVK+
Sbjct: 61  TSVAVKNLHYGFSPTPFMEATLTGEITMENPNYGAFEYEGVRNVTLIYYGVVVGIGEVKR 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           + VNAKS EK KF VKVKPN  FVNVDYFSDDLARLKTMNMS   EFEG++ LLKLFKEK
Sbjct: 121 LSVNAKSIEKRKFIVKVKPNWRFVNVDYFSDDLARLKTMNMSWNAEFEGKIYLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLACL 205
           KISV+KC+ SLNLTSHGVQNLACL
Sbjct: 181 KISVMKCSTSLNLTSHGVQNLACL 204

[Close]

BLAST of Lsi09G002090 vs. ExPASy TrEMBL
Match: A0A0A0KK54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152150 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.9e-80
Identity = 158/204 (77.45%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAAD+IPG R A  RSRRK+ +KCLNTFCICLF AAA ACI ALT GL+VLRVK PTVKL
Sbjct: 1   MAADKIPGERTAAHRSRRKSIKKCLNTFCICLFGAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +K+L YGFSPTPFMEATL GE+T+ENPN+G F+YE + NVTLIYYGV VGIGEVK+
Sbjct: 61  TSVAVKHLQYGFSPTPFMEATLTGEMTMENPNYGAFEYEGVGNVTLIYYGVVVGIGEVKR 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           + VNAKS EK +F VKVKPN  FVNVDYFSDDL RLKTMNMS   EFEG++ LLKLFKEK
Sbjct: 121 LSVNAKSIEKREFNVKVKPNWRFVNVDYFSDDLGRLKTMNMSWNAEFEGKIDLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLACL 205
           KISVLKC+ SLNLTSHGVQNLACL
Sbjct: 181 KISVLKCSTSLNLTSHGVQNLACL 204

[Close]

BLAST of Lsi09G002090 vs. NCBI nr
Match: XP_022929131.1 (late embryogenesis abundant protein At1g64065 [Cucurbita moschata])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 167/203 (82.27%), Postives = 180/203 (88.67%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAA E P  RPA LRSRRKASEKC+NTFCI LFA AAVACI AL LGL+V+RVK PTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFM+ATLI EIT+ENPNFGEFKYEE+ N TLIYYGVAVGIGEVK 
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           V VNAKS +K  F+VKVKPNSSFV+VDYFS DLA LKTMNMSCI EF+GRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKKANFKVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLAC 204
           K+S+LKCTMSLNL SHGVQNLAC
Sbjct: 181 KVSMLKCTMSLNLNSHGVQNLAC 203

[Close]

BLAST of Lsi09G002090 vs. NCBI nr
Match: XP_023550526.1 (late embryogenesis abundant protein At1g64065 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.9 bits (829), Expect = 9.7e-85
Identity = 166/203 (81.77%), Postives = 180/203 (88.67%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAA + P  RPA LRSRRKASEKC+NTFCI LFA AAVACI AL LGL+V+RVK PTVKL
Sbjct: 1   MAAGQPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFM+ATLI EIT+ENPNFGEFKYEE+ N TLIYYGVAVGIGEVK 
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           V VNAKS +K  F VKVKPNSSFV+VDYFS DLA LKTMNMSCI EF+GRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKKANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLAC 204
           K+S+LKCTMSLNL+SHGVQNLAC
Sbjct: 181 KVSMLKCTMSLNLSSHGVQNLAC 203

[Close]

BLAST of Lsi09G002090 vs. NCBI nr
Match: XP_022970100.1 (late embryogenesis abundant protein At1g64065 [Cucurbita maxima] >KAG6579536.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016995.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84
Identity = 166/203 (81.77%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAA E P  RPA LRSRRKASEKC+NTFCI LFA AAVACI AL LGL+V+RVK PTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFM+ATLI EIT+ENPNFGEFKYEE+ N TLIYYGVAVGIGEVK 
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           V VNAKS +   F VKVKPNSSFV+VDYFS DLA LKTMNMSCI EF+GRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLAC 204
           K+S+LKCTMSLNL+SHGVQNLAC
Sbjct: 181 KVSMLKCTMSLNLSSHGVQNLAC 203

[Close]

BLAST of Lsi09G002090 vs. NCBI nr
Match: XP_008437351.1 (PREDICTED: late embryogenesis abundant protein At1g64065 [Cucumis melo] >KAA0042715.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83
Identity = 164/204 (80.39%), Postives = 179/204 (87.75%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAAD+IPG RP   RSRRK+S+KCLN FCICLFAAAA ACI ALT GL+VLRVK PTVKL
Sbjct: 1   MAADKIPGDRPTAHRSRRKSSKKCLNAFCICLFAAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +KNLHYGFSPTPFMEATL GEIT+ENPN+G F+YE +RNVTLIYYGV VGIGEVK+
Sbjct: 61  TSVAVKNLHYGFSPTPFMEATLTGEITMENPNYGAFEYEGVRNVTLIYYGVVVGIGEVKR 120

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           + VNAKS EK KF VKVKPN  FVNVDYFSDDLARLKTMNMS   EFEG++ LLKLFKEK
Sbjct: 121 LSVNAKSIEKRKFIVKVKPNWRFVNVDYFSDDLARLKTMNMSWNAEFEGKIYLLKLFKEK 180

Query: 181 KISVLKCTMSLNLTSHGVQNLACL 205
           KISV+KC+ SLNLTSHGVQNLACL
Sbjct: 181 KISVMKCSTSLNLTSHGVQNLACL 204

[Close]

BLAST of Lsi09G002090 vs. NCBI nr
Match: KAE8647845.1 (hypothetical protein Csa_000600 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-79
Identity = 158/204 (77.45%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 1   MAADEIPGYRPAKLRSRRKASEKCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKL 60
           MAAD+IPG R A  RSRRK+ +KCLNTFCICLF AAA ACI ALT GL+VLRVK PTVKL
Sbjct: 211 MAADKIPGERTAAHRSRRKSIKKCLNTFCICLFGAAATACIAALTFGLVVLRVKTPTVKL 270

Query: 61  TSVVLKNLHYGFSPTPFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKK 120
           TSV +K+L YGFSPTPFMEATL GE+T+ENPN+G F+YE + NVTLIYYGV VGIGEVK+
Sbjct: 271 TSVAVKHLQYGFSPTPFMEATLTGEMTMENPNYGAFEYEGVGNVTLIYYGVVVGIGEVKR 330

Query: 121 VGVNAKSTEKTKFRVKVKPNSSFVNVDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEK 180
           + VNAKS EK +F VKVKPN  FVNVDYFSDDL RLKTMNMS   EFEG++ LLKLFKEK
Sbjct: 331 LSVNAKSIEKREFNVKVKPNWRFVNVDYFSDDLGRLKTMNMSWNAEFEGKIDLLKLFKEK 390

Query: 181 KISVLKCTMSLNLTSHGVQNLACL 205
           KISVLKC+ SLNLTSHGVQNLACL
Sbjct: 391 KISVLKCSTSLNLTSHGVQNLACL 414

[Close]

BLAST of Lsi09G002090 vs. TAIR 10
Match: AT1G64065.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-13
Identity = 62/192 (32.29%), Postives = 97/192 (50.52%), Query Frame = 0


Query: 17  RRKASE---KCLNTFCICLFAAAAVACITALTLGLIVLRVKIPTVKLTSVVLKNLHYGFS 76
           RRK  E   KCL  + + +       C   L L  I LR+  P ++  S+  ++L  G +
Sbjct: 29  RRKTEEPPGKCL-VYSLTIIVIIFALC---LILSSIFLRISKPEIETRSISTRDLRSGGN 88

Query: 77  PT-PFMEATLIGEITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKKVGVNAKSTEKTK 136
            T P+  ATL+ +I+I N NFG F++E+   + ++Y    V +GE K  G   ++ +  +
Sbjct: 89  STNPYFNATLVSDISIRNSNFGAFEFED-STLRVVYADHGV-VGETKIEGRRVEAHKTVR 148

Query: 137 FRVKVKPNSSFVNVDYFS-DDLARLKTMNMSCITEFEGRVRLLKLFKEKKISVLKCTMSL 196
               V    SF  +D    D   RL  + +  + E  GR+++L   K  K+SV+ CTM L
Sbjct: 149 ITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAEVRGRIKVLGR-KRWKVSVMSCTMRL 208

Query: 197 NLTSHGVQNLAC 204
           NLT   +QNL C
Sbjct: 209 NLTGRFIQNLLC 213

[Close]

BLAST of Lsi09G002090 vs. TAIR 10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07
Identity = 46/182 (25.27%), Postives = 84/182 (46.15%), Query Frame = 0


Query: 30  ICLFAAAAVACITALTLGLIVLRVKIPTVKLTSVVLKNLHYGFSPTPFMEATLIG----- 89
           IC+ A + +     LTL   V RVK P +K+  V++  L    S T   +  L+G     
Sbjct: 40  ICVTATSLILTTIVLTLVFTVFRVKDPIIKMNGVMVNGLD---SVTGTNQVQLLGTNISM 99

Query: 90  --EITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKKVGVNAKSTEKTKFRVKVKPNSS 149
             +++++NPN   FKY    N T   Y     +GE   +   A+    ++  V V     
Sbjct: 100 IVDVSVKNPNTASFKYS---NTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLD 159

Query: 150 FVNVD-YFSDDLARLKTMNMSCITEFEGRVRLLKLFKEKKISVLKCTMSLNLTSHGVQNL 204
            +  D     +++R   +N+   T   G+V+++ + K+     + CTM++N+T   +Q++
Sbjct: 160 RILSDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDV 215

[Close]

BLAST of Lsi09G002090 vs. TAIR 10
Match: AT2G44000.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 46.2 bits (108), Expect = 3.6e-05
Identity = 49/178 (27.53%), Postives = 79/178 (44.38%), Query Frame = 0


Query: 30  ICLFAAAAVACITALTLGLIVLRVKIPTVKLTSVVLKNLHY----GFSPTPFMEATLIGE 89
           I + A   +     + +G   +  K  T  LTSV ++NL Y      S + +  ATL  E
Sbjct: 36  IFILAGLCMLLFIFIVIGFFFI-AKPLTASLTSVEVRNLRYNNNTSSSSSLYFNATLAME 95

Query: 90  ITIENPNFGEFKYEEIRNVTLIYYGVAVGIGEVKKVGVNAKSTEKTKFRVKVKPNSSFVN 149
           I IENPN G F++   R   ++Y G  VG   +    V +    +T+   +V    +  +
Sbjct: 96  IRIENPNLGFFEFPTSRG-EILYNGDVVGEMRINGQRVASFGDLRTEVSAEVAYRGNQKS 155

Query: 150 VDYFSDDLARLKTMNMSCITEFEGRVRLLKLFKEKKISVLKCTMSLNLTSHGVQNLAC 204
             +  +D+ R + + +    +  G V L  L   K+   LKC M LNL+   +  L C
Sbjct: 156 PVWLKNDIER-RLIILETRAKLRGEVHLKDL--NKRTVNLKCLMQLNLSDDVIHRLWC 208

The following BLAST results are available for this feature:

BLAST of Lsi09G002090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DST1	5.1e-12	32.29	Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi09G002090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM85	1.2e-85	82.27	late embryogenesis abundant protein At1g64065 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1I1W2	8.0e-85	81.77	late embryogenesis abundant protein At1g64065 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5A7TMT1	6.8e-84	80.39	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3AUE7	6.8e-84	80.39	late embryogenesis abundant protein At1g64065 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0KK54	5.9e-80	77.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152150 PE=4 SV=1	[more]

BLAST of Lsi09G002090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929131.1	2.5e-85	82.27	late embryogenesis abundant protein At1g64065 [Cucurbita moschata]	[more]
XP_023550526.1	9.7e-85	81.77	late embryogenesis abundant protein At1g64065 [Cucurbita pepo subsp. pepo]	[more]
XP_022970100.1	1.7e-84	81.77	late embryogenesis abundant protein At1g64065 [Cucurbita maxima] >KAG6579536.1 L...	[more]
XP_008437351.1	1.4e-83	80.39	PREDICTED: late embryogenesis abundant protein At1g64065 [Cucumis melo] >KAA0042...	[more]
KAE8647845.1	1.2e-79	77.45	hypothetical protein Csa_000600 [Cucumis sativus]	[more]

BLAST of Lsi09G002090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64065.1	3.6e-13	32.29	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	1.3e-07	25.27	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G44000.1	3.6e-05	27.53	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 86..182 e-value: 8.4E-6 score: 26.3
None	No IPR available	PANTHER	PTHR31852:SF157	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 21..203
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 21..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G002090.1	Lsi09G002090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane