Lsi09G002080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G002080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLEA_2 domain-containing protein
Locationchr09: 2162292 .. 2163456 (-)
RNA-Seq ExpressionLsi09G002080
SyntenyLsi09G002080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGATAATGGAGTCTTCGTTCCCAAATGATTAAATACTCAACACATCGCTTCTTTTGCGGTCATTTCACCATAGCCATGGCTGATAAAGAGCAGGTCAAACCATTGGCTTCCGCGGCTGCCGAACTCCGGAGCGACGACCATATCTTTCTTCCTCCTCCGGCCAAGCTCCACCTCCATAGAAACAAATATATCAAGTGCTGTGGCTGCTTTGCTGCTCTCCTCTTAATTCTCGCGGTCATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATATTAAAATCGACTCACTCTCATTTCTAAATGATACTTCGAGTTCAAGTAAGTTTGCAATGATTTTTGAAATAATGAAAACAAAGGATTTTTGTTTATTTTTCTTAAAAGTCATTCTAAACTCGCCCTTATTTCTTCTTTATCAGATAGTGGGATAATTGTTGTGGTGGCTAGTGTCTCGGTGCGAAACCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCTCGACCGAGATTTACTACCACGACAAGGTCATCGGAGAGGGCGAGATGCCGCCGGGGGAGGTAAAGGCAAAAGACACACTAAAGTTGAATATAACGGTAGAGATCGAACCGGAGAAAATCGACGATGCTTCGAGTTTGATAAAGGATTGGAATTTGGGAGCTTTGAATATTAGTAGCTACACGGAAATTCCAGGAAGAGTTAAACTACTTGGCTCCATCAAGAAAAACTTTGTGGTGAAAGTAAGCTGCTCATTGACTTTCAATACTAAAAGGCAGATGATTCAAGAACAAGAATGTGATCAACGAGTGAGAATCTCTGTTTAATGAAAGGTGAAGTTTAATTGAAATTGCTTAAAAAAAAGGTAAATTTAAGAGGATTATTCAAGTAGTGAAAAAAAATAATGACTGACGAGATATTAAAAGTTTTAATTTGAATATGTAGATAGTTACGTATGTTGTAATGGGTATATTAAACTTTTTTTTAGTAGAATGTTAGGATTTATTATTCATTTTTTGGATCATATTAGTTTCTTATTTTGAGTAAAATTTATGAAATTGTGTTGTAAGGTTATGAAATTATTTGTATATAATTTCCCAAGTAAACTGTTAATTTTTTTTTTCATATTACAAATAATAATTACAGAAGTTTTTAATTAAAA

mRNA sequence

CGATAATGGAGTCTTCGTTCCCAAATGATTAAATACTCAACACATCGCTTCTTTTGCGGTCATTTCACCATAGCCATGGCTGATAAAGAGCAGGTCAAACCATTGGCTTCCGCGGCTGCCGAACTCCGGAGCGACGACCATATCTTTCTTCCTCCTCCGGCCAAGCTCCACCTCCATAGAAACAAATATATCAAGTGCTGTGGCTGCTTTGCTGCTCTCCTCTTAATTCTCGCGGTCATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATATTAAAATCGACTCACTCTCATTTCTAAATGATACTTCGAGTTCAAATAGTGGGATAATTGTTGTGGTGGCTAGTGTCTCGGTGCGAAACCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCTCGACCGAGATTTACTACCACGACAAGGTCATCGGAGAGGGCGAGATGCCGCCGGGGGAGGTAAAGGCAAAAGACACACTAAAGTTGAATATAACGGTAGAGATCGAACCGGAGAAAATCGACGATGCTTCGAGTTTGATAAAGGATTGGAATTTGGGAGCTTTGAATATTAGTAGCTACACGGAAATTCCAGGAAGAGTTAAACTACTTGGCTCCATCAAGAAAAACTTTGTGGTGAAAGTAAGCTGCTCATTGACTTTCAATACTAAAAGGCAGATGATTCAAGAACAAGAATGTGATCAACGAGTGAGAATCTCTGTTTAATGAAAGGTGAAGTTTAATTGAAATTGCTTAAAAAAAAGGTAAATTTAAGAGGATTATTCAAGTAGTGAAAAAAAATAATGACTGACGAGATATTAAAAGTTTTAATTTGAATATGTAGATAGTTACGTATGTTGTAATGGGTATATTAAACTTTTTTTTAGTAGAATGTTAGGATTTATTATTCATTTTTTGGATCATATTAGTTTCTTATTTTGAGTAAAATTTATGAAATTGTGTTGTAAGGTTATGAAATTATTTGTATATAATTTCCCAAGTAAACTGTTAATTTTTTTTTTCATATTACAAATAATAATTACAGAAGTTTTTAATTAAAA

Coding sequence (CDS)

ATGATTAAATACTCAACACATCGCTTCTTTTGCGGTCATTTCACCATAGCCATGGCTGATAAAGAGCAGGTCAAACCATTGGCTTCCGCGGCTGCCGAACTCCGGAGCGACGACCATATCTTTCTTCCTCCTCCGGCCAAGCTCCACCTCCATAGAAACAAATATATCAAGTGCTGTGGCTGCTTTGCTGCTCTCCTCTTAATTCTCGCGGTCATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATATTAAAATCGACTCACTCTCATTTCTAAATGATACTTCGAGTTCAAATAGTGGGATAATTGTTGTGGTGGCTAGTGTCTCGGTGCGAAACCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCTCGACCGAGATTTACTACCACGACAAGGTCATCGGAGAGGGCGAGATGCCGCCGGGGGAGGTAAAGGCAAAAGACACACTAAAGTTGAATATAACGGTAGAGATCGAACCGGAGAAAATCGACGATGCTTCGAGTTTGATAAAGGATTGGAATTTGGGAGCTTTGAATATTAGTAGCTACACGGAAATTCCAGGAAGAGTTAAACTACTTGGCTCCATCAAGAAAAACTTTGTGGTGAAAGTAAGCTGCTCATTGACTTTCAATACTAAAAGGCAGATGATTCAAGAACAAGAATGTGATCAACGAGTGAGAATCTCTGTTTAA

Protein sequence

MIKYSTHRFFCGHFTIAMADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIVLGFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYHDKVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKLLGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV
Homology
BLAST of Lsi09G002080 vs. ExPASy Swiss-Prot
Match: Q6DST1 (Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN=At1g64065 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 53/179 (29.61%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 57  KCCGCFAALLLILAVIGIVLGFTVLHIKTPDIKIDSLSFLNDTSSSNSG----IIVVVAS 116
           KC      +++I+  + ++L    L I  P+I+  S+S  +  S  NS        +V+ 
Sbjct: 38  KCLVYSLTIIVIIFALCLILSSIFLRISKPEIETRSISTRDLRSGGNSTNPYFNATLVSD 97

Query: 117 VSVRNPNVASFKYSKASTEIYYHDK-VIGEGEMPPGEVKAKDTLKL-NITVEIEPEKIDD 176
           +S+RN N  +F++  ++  + Y D  V+GE ++    V+A  T+++  + VEI   ++ D
Sbjct: 98  ISIRNSNFGAFEFEDSTLRVVYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLD 157

Query: 177 ASSLIKDWNLGALNISSYTEIPGRVKLLGSIKKNFVVKV-SCSLTFNTKRQMIQEQECD 229
              L KD  LG L + S  E+ GR+K+LG  +K + V V SC++  N   + IQ   C+
Sbjct: 158 TKDLDKDLRLGFLELRSVAEVRGRIKVLG--RKRWKVSVMSCTMRLNLTGRFIQNLLCE 214

BLAST of Lsi09G002080 vs. ExPASy TrEMBL
Match: A0A5A7THA2 (Late embryogenesis abundant protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002120 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.6e-99
Identity = 189/218 (86.70%), Postives = 206/218 (94.50%), Query Frame = 0

Query: 18  MADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIVLG 77
           MADKEQVKPLASA AELRSDDHIFLPPP KL+L+RNKYIKCCGCF+ALLLILAVIGIVLG
Sbjct: 1   MADKEQVKPLASATAELRSDDHIFLPPPPKLNLYRNKYIKCCGCFSALLLILAVIGIVLG 60

Query: 78  FTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYHDK 137
           FTV HIKTPDIKIDSLSF NDT SSNSGII VVASVSVRNPNVASFKYSKAST+IYYH+K
Sbjct: 61  FTVFHIKTPDIKIDSLSFPNDTLSSNSGII-VVASVSVRNPNVASFKYSKASTKIYYHNK 120

Query: 138 VIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKL 197
           VIGEGE PPGEVKAKDTLK+N+TV+IEP KIDDASSLIKDWN GAL+ISSYTEIPGRVKL
Sbjct: 121 VIGEGETPPGEVKAKDTLKMNVTVKIEPWKIDDASSLIKDWNSGALSISSYTEIPGRVKL 180

Query: 198 LGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV 236
           LG+IKKN++VK+SCSLT+N+K + IQ Q+CDQRVRISV
Sbjct: 181 LGAIKKNYLVKISCSLTYNSKSKTIQRQDCDQRVRISV 217

BLAST of Lsi09G002080 vs. ExPASy TrEMBL
Match: A0A1S3ATT7 (uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.6e-99
Identity = 189/218 (86.70%), Postives = 206/218 (94.50%), Query Frame = 0

Query: 18  MADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIVLG 77
           MADKEQVKPLASA AELRSDDHIFLPPP KL+L+RNKYIKCCGCF+ALLLILAVIGIVLG
Sbjct: 1   MADKEQVKPLASATAELRSDDHIFLPPPPKLNLYRNKYIKCCGCFSALLLILAVIGIVLG 60

Query: 78  FTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYHDK 137
           FTV HIKTPDIKIDSLSF NDT SSNSGII VVASVSVRNPNVASFKYSKAST+IYYH+K
Sbjct: 61  FTVFHIKTPDIKIDSLSFPNDTLSSNSGII-VVASVSVRNPNVASFKYSKASTKIYYHNK 120

Query: 138 VIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKL 197
           VIGEGE PPGEVKAKDTLK+N+TV+IEP KIDDASSLIKDWN GAL+ISSYTEIPGRVKL
Sbjct: 121 VIGEGETPPGEVKAKDTLKMNVTVKIEPWKIDDASSLIKDWNSGALSISSYTEIPGRVKL 180

Query: 198 LGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV 236
           LG+IKKN++VK+SCSLT+N+K + IQ Q+CDQRVRISV
Sbjct: 181 LGAIKKNYLVKISCSLTYNSKSKTIQRQDCDQRVRISV 217

BLAST of Lsi09G002080 vs. ExPASy TrEMBL
Match: A0A0A0KMH1 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.9e-98
Identity = 190/219 (86.76%), Postives = 205/219 (93.61%), Query Frame = 0

Query: 18  MADKEQVKPLASAAAELRSDDHIFLPPP-AKLHLHRNKYIKCCGCFAALLLILAVIGIVL 77
           MADKEQVKPLASA+AELRSDDHIFLPPP  KLHLHRNKYI CCGCFAALLLILAVIGIVL
Sbjct: 1   MADKEQVKPLASASAELRSDDHIFLPPPDPKLHLHRNKYIMCCGCFAALLLILAVIGIVL 60

Query: 78  GFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYHD 137
           GFTV HIKTPDIKIDSLSF NDT SSNSGII VVASVSVRNPNVASFKYSKAS EIYYHD
Sbjct: 61  GFTVFHIKTPDIKIDSLSFPNDTLSSNSGII-VVASVSVRNPNVASFKYSKASIEIYYHD 120

Query: 138 KVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVK 197
           KVIGEGE PPGEVKAKDTL++N+TVEIEP K+DDASSLIKDWN G+L+ISSYTEIPGRVK
Sbjct: 121 KVIGEGETPPGEVKAKDTLRMNVTVEIEPWKMDDASSLIKDWNSGSLSISSYTEIPGRVK 180

Query: 198 LLGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV 236
           +LGSIKKN++VK+SCSLT+N+K + IQ Q+CDQRVRISV
Sbjct: 181 ILGSIKKNYLVKISCSLTYNSKSKTIQGQDCDQRVRISV 218

BLAST of Lsi09G002080 vs. ExPASy TrEMBL
Match: A0A6J1H2C0 (uncharacterized protein LOC111459739 OS=Cucurbita moschata OX=3662 GN=LOC111459739 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.1e-77
Identity = 153/219 (69.86%), Postives = 180/219 (82.19%), Query Frame = 0

Query: 16  IAMADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIV 75
           IAMA+K+QVKPLAS A  LRSDD  FLPPPAKL LHRNKYI C GCFAALLLILAVIGIV
Sbjct: 212 IAMAEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIV 271

Query: 76  LGFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYH 135
           LGFTVLHIKTPD+KID LSF N T  SN G+I+VV SV VRNPNVASFKY KA+T IYYH
Sbjct: 272 LGFTVLHIKTPDLKIDKLSFSNAT--SNGGVIIVV-SVFVRNPNVASFKYLKATTVIYYH 331

Query: 136 DKVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRV 195
           DK+IGEGE P GE KAKDT+ +N+T+EI+ E++D+  SL++D   G LNISSYTEIPGRV
Sbjct: 332 DKMIGEGETPGGEAKAKDTMTMNVTMEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRV 391

Query: 196 KLLGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRIS 235
           K++G I+K F VK+ CS T+N K Q I+ ++CDQ V++S
Sbjct: 392 KIIGFIRKRFEVKMECSFTYNAKTQTIEREDCDQHVKMS 427

BLAST of Lsi09G002080 vs. ExPASy TrEMBL
Match: A0A6J1K4Z4 (uncharacterized protein LOC111491239 OS=Cucurbita maxima OX=3661 GN=LOC111491239 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 6.6e-75
Identity = 149/217 (68.66%), Postives = 176/217 (81.11%), Query Frame = 0

Query: 18  MADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIVLG 77
           M +K+QVKPLAS A  LRSDD  FLPPPAKL LHRNKYI C GCFAALLLILAVIGIVLG
Sbjct: 1   MPEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60

Query: 78  FTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYHDK 137
           FTVLHIKTPD+KID LSF N TS   +G I++VASV VRNPNVASFKYSKA+  IYYH  
Sbjct: 61  FTVLHIKTPDLKIDKLSFSNTTS---NGGIIIVASVFVRNPNVASFKYSKATMMIYYHGA 120

Query: 138 VIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKL 197
           +IGEGE P GE KAKDT+ +N+TVEI+ E++D+  SL++D   G LNISSY EIPGRVK+
Sbjct: 121 MIGEGETPGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYMEIPGRVKI 180

Query: 198 LGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRIS 235
           +G IKK F VK+ CS T+N K Q I++++CD+RV+IS
Sbjct: 181 IGFIKKMFEVKLECSFTYNAKTQTIEKEDCDERVKIS 214

BLAST of Lsi09G002080 vs. NCBI nr
Match: KAE8647844.1 (hypothetical protein Csa_000176 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 5.7e-105
Identity = 202/235 (85.96%), Postives = 218/235 (92.77%), Query Frame = 0

Query: 2   IKYSTHRFFCGHFTIAMADKEQVKPLASAAAELRSDDHIFLPPP-AKLHLHRNKYIKCCG 61
           IKYST+ FF  HFTIAMADKEQVKPLASA+AELRSDDHIFLPPP  KLHLHRNKYI CCG
Sbjct: 9   IKYSTYPFFWCHFTIAMADKEQVKPLASASAELRSDDHIFLPPPDPKLHLHRNKYIMCCG 68

Query: 62  CFAALLLILAVIGIVLGFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNV 121
           CFAALLLILAVIGIVLGFTV HIKTPDIKIDSLSF NDT SSNSGII VVASVSVRNPNV
Sbjct: 69  CFAALLLILAVIGIVLGFTVFHIKTPDIKIDSLSFPNDTLSSNSGII-VVASVSVRNPNV 128

Query: 122 ASFKYSKASTEIYYHDKVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNL 181
           ASFKYSKAS EIYYHDKVIGEGE PPGEVKAKDTL++N+TVEIEP K+DDASSLIKDWN 
Sbjct: 129 ASFKYSKASIEIYYHDKVIGEGETPPGEVKAKDTLRMNVTVEIEPWKMDDASSLIKDWNS 188

Query: 182 GALNISSYTEIPGRVKLLGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV 236
           G+L+ISSYTEIPGRVK+LGSIKKN++VK+SCSLT+N+K + IQ Q+CDQRVRISV
Sbjct: 189 GSLSISSYTEIPGRVKILGSIKKNYLVKISCSLTYNSKSKTIQGQDCDQRVRISV 242

BLAST of Lsi09G002080 vs. NCBI nr
Match: XP_031741228.1 (uncharacterized protein LOC101212153 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 5.7e-105
Identity = 202/235 (85.96%), Postives = 218/235 (92.77%), Query Frame = 0

Query: 2   IKYSTHRFFCGHFTIAMADKEQVKPLASAAAELRSDDHIFLPPP-AKLHLHRNKYIKCCG 61
           IKYST+ FF  HFTIAMADKEQVKPLASA+AELRSDDHIFLPPP  KLHLHRNKYI CCG
Sbjct: 218 IKYSTYPFFWCHFTIAMADKEQVKPLASASAELRSDDHIFLPPPDPKLHLHRNKYIMCCG 277

Query: 62  CFAALLLILAVIGIVLGFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNV 121
           CFAALLLILAVIGIVLGFTV HIKTPDIKIDSLSF NDT SSNSGII VVASVSVRNPNV
Sbjct: 278 CFAALLLILAVIGIVLGFTVFHIKTPDIKIDSLSFPNDTLSSNSGII-VVASVSVRNPNV 337

Query: 122 ASFKYSKASTEIYYHDKVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNL 181
           ASFKYSKAS EIYYHDKVIGEGE PPGEVKAKDTL++N+TVEIEP K+DDASSLIKDWN 
Sbjct: 338 ASFKYSKASIEIYYHDKVIGEGETPPGEVKAKDTLRMNVTVEIEPWKMDDASSLIKDWNS 397

Query: 182 GALNISSYTEIPGRVKLLGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV 236
           G+L+ISSYTEIPGRVK+LGSIKKN++VK+SCSLT+N+K + IQ Q+CDQRVRISV
Sbjct: 398 GSLSISSYTEIPGRVKILGSIKKNYLVKISCSLTYNSKSKTIQGQDCDQRVRISV 451

BLAST of Lsi09G002080 vs. NCBI nr
Match: XP_038875804.1 (uncharacterized protein LOC120068170 [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.6e-99
Identity = 190/218 (87.16%), Postives = 205/218 (94.04%), Query Frame = 0

Query: 18  MADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIVLG 77
           MADKEQVKPLASA  E RSDD IFLPPPAKLHLH+NKYIK CGCFAALL+ILAVIGIVLG
Sbjct: 1   MADKEQVKPLASATVEPRSDDDIFLPPPAKLHLHKNKYIKFCGCFAALLIILAVIGIVLG 60

Query: 78  FTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYHDK 137
           FTVLHI+TP+IKIDSLSFLN TSSSNS II VVASVSVRNPNVASFKYSKASTEIYYH  
Sbjct: 61  FTVLHIRTPNIKIDSLSFLNSTSSSNSRIIFVVASVSVRNPNVASFKYSKASTEIYYHGT 120

Query: 138 VIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKL 197
           VIGEGE PPGEVKAKDTLK+N+TVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVK+
Sbjct: 121 VIGEGETPPGEVKAKDTLKMNMTVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKI 180

Query: 198 LGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV 236
           LGSIKK+F+VK++CSLTFN++ +MIQ Q+CDQRVRISV
Sbjct: 181 LGSIKKHFLVKITCSLTFNSRSEMIQGQDCDQRVRISV 218

BLAST of Lsi09G002080 vs. NCBI nr
Match: XP_008437350.1 (PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo] >KAA0042714.1 late embryogenesis abundant protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 370.2 bits (949), Expect = 1.4e-98
Identity = 189/218 (86.70%), Postives = 206/218 (94.50%), Query Frame = 0

Query: 18  MADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIVLG 77
           MADKEQVKPLASA AELRSDDHIFLPPP KL+L+RNKYIKCCGCF+ALLLILAVIGIVLG
Sbjct: 1   MADKEQVKPLASATAELRSDDHIFLPPPPKLNLYRNKYIKCCGCFSALLLILAVIGIVLG 60

Query: 78  FTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYHDK 137
           FTV HIKTPDIKIDSLSF NDT SSNSGII VVASVSVRNPNVASFKYSKAST+IYYH+K
Sbjct: 61  FTVFHIKTPDIKIDSLSFPNDTLSSNSGII-VVASVSVRNPNVASFKYSKASTKIYYHNK 120

Query: 138 VIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKL 197
           VIGEGE PPGEVKAKDTLK+N+TV+IEP KIDDASSLIKDWN GAL+ISSYTEIPGRVKL
Sbjct: 121 VIGEGETPPGEVKAKDTLKMNVTVKIEPWKIDDASSLIKDWNSGALSISSYTEIPGRVKL 180

Query: 198 LGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRISV 236
           LG+IKKN++VK+SCSLT+N+K + IQ Q+CDQRVRISV
Sbjct: 181 LGAIKKNYLVKISCSLTYNSKSKTIQRQDCDQRVRISV 217

BLAST of Lsi09G002080 vs. NCBI nr
Match: XP_022958536.1 (uncharacterized protein LOC111459739 [Cucurbita moschata])

HSP 1 Score: 297.7 bits (761), Expect = 8.6e-77
Identity = 153/219 (69.86%), Postives = 180/219 (82.19%), Query Frame = 0

Query: 16  IAMADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIV 75
           IAMA+K+QVKPLAS A  LRSDD  FLPPPAKL LHRNKYI C GCFAALLLILAVIGIV
Sbjct: 212 IAMAEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIV 271

Query: 76  LGFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKASTEIYYH 135
           LGFTVLHIKTPD+KID LSF N T  SN G+I+VV SV VRNPNVASFKY KA+T IYYH
Sbjct: 272 LGFTVLHIKTPDLKIDKLSFSNAT--SNGGVIIVV-SVFVRNPNVASFKYLKATTVIYYH 331

Query: 136 DKVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWNLGALNISSYTEIPGRV 195
           DK+IGEGE P GE KAKDT+ +N+T+EI+ E++D+  SL++D   G LNISSYTEIPGRV
Sbjct: 332 DKMIGEGETPGGEAKAKDTMTMNVTMEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRV 391

Query: 196 KLLGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRVRIS 235
           K++G I+K F VK+ CS T+N K Q I+ ++CDQ V++S
Sbjct: 392 KIIGFIRKRFEVKMECSFTYNAKTQTIEREDCDQHVKMS 427

BLAST of Lsi09G002080 vs. TAIR 10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 128.3 bits (321), Expect = 8.4e-30
Identity = 82/223 (36.77%), Postives = 126/223 (56.50%), Query Frame = 0

Query: 18  MADKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKYIKCCGCFAALLLILAVIGIVLG 77
           MAD E V+PLA A     SD+          H  RN+ IKC  C  A  LIL  I + L 
Sbjct: 1   MADSEHVRPLAPATILPVSDES--ASNIKNTHRSRNR-IKCSICVTATSLILTTIVLTLV 60

Query: 78  FTVLHIKTPDIK--------IDSLSFLNDTSSSNSGIIVVVASVSVRNPNVASFKYSKAS 137
           FTV  +K P IK        +DS++  N      + I ++V  VSV+NPN ASFKYS  +
Sbjct: 61  FTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIV-DVSVKNPNTASFKYSNTT 120

Query: 138 TEIYYHDKVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASSLIKDWN-LGALNISSY 197
           T+IYY   ++GE    PG+ +   T ++N+TV+I  ++I     L ++ +  G +N+ SY
Sbjct: 121 TDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSY 180

Query: 198 TEIPGRVKLLGSIKKNFVVKVSCSLTFNTKRQMIQEQECDQRV 232
           T + G+VK++G +KK+  VK++C++  N   Q IQ+ +C +++
Sbjct: 181 TRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKI 219

BLAST of Lsi09G002080 vs. TAIR 10
Match: AT4G23610.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-18
Identity = 67/223 (30.04%), Postives = 108/223 (48.43%), Query Frame = 0

Query: 20  DKEQVKPLASAAAELRSDDHIFLPPPAKLHLHRNKY-------IKCCGCFAALLLILAVI 79
           +++Q KPLA      RSD         + H  R KY       I CCG  A+L +++AV 
Sbjct: 9   NEDQAKPLAPLFLTTRSDQP---DEEDQYHHDRTKYVHSQTKLILCCGFIASLTMLIAVT 68

Query: 80  GIVLGFTVLHIKTPDIKIDSLS------FLNDTSSSNSGIIVVVASVSVRNPNVASFKYS 139
            IVL  TV H+ +P++ +DS+S      F+N   ++N    V V  +S+ NPN A F   
Sbjct: 69  FIVLSLTVFHLHSPNLTVDSISFNQRFDFVNGKVNTNQNTTVSV-EISLHNPNPALFIVK 128

Query: 140 KASTEIYYHD-KVIGEGEMPPGEVKAKDTLKLNITVEIEPEK-IDDASSLIKDWNLGALN 199
             +   Y+ +  V+GE       + AK T+K+N+T EI   K +     L++D N   ++
Sbjct: 129 NVNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGRGVD 188

Query: 200 ISSYTEIPGRVKLLGSIKKNFVVKVSCSLTFNTKRQMIQEQEC 228
           + S  E+ GRVK +   +K   ++  C +   T   +    +C
Sbjct: 189 LKSSVEVRGRVKKMKIFRKTVHLQTDCFMKMTTNNFLTPTFQC 227

BLAST of Lsi09G002080 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-17
Identity = 52/191 (27.23%), Postives = 98/191 (51.31%), Query Frame = 0

Query: 50  LHRNKYIKCCGCFAALL-LILAVIGIVLGFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIV 109
           L R +  K C CF  LL L++A++ ++L FT+   K P   IDS++     +S N  ++ 
Sbjct: 45  LRRKRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLK 104

Query: 110 VV------ASVSVRNPNVASFKYSKASTEIYYHDKVIGEGEMPPGEVKAKDTLKLNITVE 169
           V+        +S++NPN   F Y  +S  + Y  +VIGE  +P   + A+ T+ LNIT+ 
Sbjct: 105 VLLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLT 164

Query: 170 IEPEKIDDASSLIKDWNLGALNISSYTEIPGRVKLLGSIKKNFVVKVSCSLTFNTKRQMI 229
           +  +++   + L+ D   G + ++++ ++ G+V +L   K       SC L+ +   + +
Sbjct: 165 LMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNV 224

Query: 230 QEQECDQRVRI 234
             Q C    ++
Sbjct: 225 TSQHCKYSTKL 235

BLAST of Lsi09G002080 vs. TAIR 10
Match: AT1G64065.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-13
Identity = 53/179 (29.61%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 57  KCCGCFAALLLILAVIGIVLGFTVLHIKTPDIKIDSLSFLNDTSSSNSG----IIVVVAS 116
           KC      +++I+  + ++L    L I  P+I+  S+S  +  S  NS        +V+ 
Sbjct: 38  KCLVYSLTIIVIIFALCLILSSIFLRISKPEIETRSISTRDLRSGGNSTNPYFNATLVSD 97

Query: 117 VSVRNPNVASFKYSKASTEIYYHDK-VIGEGEMPPGEVKAKDTLKL-NITVEIEPEKIDD 176
           +S+RN N  +F++  ++  + Y D  V+GE ++    V+A  T+++  + VEI   ++ D
Sbjct: 98  ISIRNSNFGAFEFEDSTLRVVYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLD 157

Query: 177 ASSLIKDWNLGALNISSYTEIPGRVKLLGSIKKNFVVKV-SCSLTFNTKRQMIQEQECD 229
              L KD  LG L + S  E+ GR+K+LG  +K + V V SC++  N   + IQ   C+
Sbjct: 158 TKDLDKDLRLGFLELRSVAEVRGRIKVLG--RKRWKVSVMSCTMRLNLTGRFIQNLLCE 214

BLAST of Lsi09G002080 vs. TAIR 10
Match: AT1G64450.1 (Glycine-rich protein family )

HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04
Identity = 32/115 (27.83%), Postives = 54/115 (46.96%), Query Frame = 0

Query: 59  CGCFAALLLILAVIGIVLGFTVLHIKTPDIKIDSLSFLNDTSSSNSGIIVVVASVSVRNP 118
           C      LLIL V+ +V+ FTV   K P I ++++   +   S+N+        V+VRNP
Sbjct: 19  CAVATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSFAVSNNTANFSFSQYVAVRNP 78

Query: 119 NVASFKYSKASTEIYYHDKVIGEGEMPPGEVKAKDTLKLNITVEIEPEKIDDASS 174
           N A F +  +S ++ Y    +G   +P G++ +     +  T  +    I   SS
Sbjct: 79  NRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAATFTVHSFPISPPSS 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6DST11.0e-1129.61Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
A0A5A7THA26.6e-9986.70Late embryogenesis abundant protein-like protein OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3ATT76.6e-9986.70uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=... [more]
A0A0A0KMH11.9e-9886.76LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 ... [more]
A0A6J1H2C04.1e-7769.86uncharacterized protein LOC111459739 OS=Cucurbita moschata OX=3662 GN=LOC1114597... [more]
A0A6J1K4Z46.6e-7568.66uncharacterized protein LOC111491239 OS=Cucurbita maxima OX=3661 GN=LOC111491239... [more]
Match NameE-valueIdentityDescription
KAE8647844.15.7e-10585.96hypothetical protein Csa_000176 [Cucumis sativus][more]
XP_031741228.15.7e-10585.96uncharacterized protein LOC101212153 [Cucumis sativus][more]
XP_038875804.11.6e-9987.16uncharacterized protein LOC120068170 [Benincasa hispida][more]
XP_008437350.11.4e-9886.70PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo] >KAA0042714.1 lat... [more]
XP_022958536.18.6e-7769.86uncharacterized protein LOC111459739 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G46150.18.4e-3036.77Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT4G23610.13.3e-1830.04Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT3G54200.11.6e-1727.23Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT1G64065.17.1e-1329.61Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT1G64450.12.7e-0427.83Glycine-rich protein family [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA_2 subgroupPFAMPF03168LEA_2coord: 113..212
e-value: 2.2E-14
score: 53.9
NoneNo IPR availableGENE3D2.60.40.1820coord: 71..219
e-value: 1.6E-12
score: 49.5
NoneNo IPR availablePANTHERPTHR31852LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILYcoord: 39..232
NoneNo IPR availablePANTHERPTHR31852:SF151LATE EMBRYOGENESIS ABUNDANT PROTEINcoord: 39..232
NoneNo IPR availableSUPERFAMILY117070LEA14-likecoord: 67..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G002080.1Lsi09G002080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane