Lsi09G001260 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTCCATGTTCAGTTTATTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAATTTCGTTAGGGCTTCTTCCTCTGTACCTTCCTTCACTCCCAACAATGGCGGCTCTGCCTCTTCCGCCGTGAAGCCACTGCCGATCAAGAAAGAAGAAACGAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGA ATGAATTCCATGTTCAGTTTATTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAATTTCGTTAGGGCTTCTTCCTCTGTACCTTCCTTCACTCCCAACAATGGCGGCTCTGCCTCTTCCGCCGTGAAGCCACTGCCGATCAAGAAAGAAGAAACGAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGA ATGAATTCCATGTTCAGTTTATTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAATTTCGTTAGGGCTTCTTCCTCTGTACCTTCCTTCACTCCCAACAATGGCGGCTCTGCCTCTTCCGCCGTGAAGCCACTGCCGATCAAGAAAGAAGAAACGAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGA MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPNNGGSASSAVKPLPIKKEETNSKNSSMKPRFALELDGLNCFETLVPN Homology
BLAST of Lsi09G001260 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25 Identity = 66/80 (82.50%), Postives = 69/80 (86.25%), Query Frame = 0
BLAST of Lsi09G001260 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23 Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = 0
BLAST of Lsi09G001260 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23 Identity = 68/86 (79.07%), Postives = 71/86 (82.56%), Query Frame = 0
BLAST of Lsi09G001260 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09 Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 0
BLAST of Lsi09G001260 vs. ExPASy TrEMBL
Match: A0A5C7H1W0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_023293 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06 Identity = 42/84 (50.00%), Postives = 49/84 (58.33%), Query Frame = 0
BLAST of Lsi09G001260 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus]) HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25 Identity = 66/80 (82.50%), Postives = 69/80 (86.25%), Query Frame = 0
BLAST of Lsi09G001260 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23 Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0
BLAST of Lsi09G001260 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23 Identity = 68/86 (79.07%), Postives = 71/86 (82.56%), Query Frame = 0
BLAST of Lsi09G001260 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa]) HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23 Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = 0
BLAST of Lsi09G001260 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23 Identity = 68/86 (79.07%), Postives = 71/86 (82.56%), Query Frame = 0
BLAST of Lsi09G001260 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 61.2 bits (147), Expect = 4.2e-10 Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0
BLAST of Lsi09G001260 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.6 bits (122), Expect = 3.3e-07 Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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