Lsi09G000610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G000610
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionWD repeat-containing protein 91-like protein
Locationchr09: 483317 .. 484107 (-)
RNA-Seq ExpressionLsi09G000610
SyntenyLsi09G000610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGGAGACTTGAGGAGCTTTGAGGAACTGAAAGTTATTAACAAGGAGCAAGAAACAAAGGTGTGTTACCATGAAAGCAAAGTTCAGAATTTGGTAATTGGCTACCTCATTTTCGGACGATTGCTCTTCTCTGGATGCTGCCACTATGTTGTGTCGGACCCAATACCAACAGAATATAATCCGGAAGGAAGTAATGGAAGTTTGCCAACGAATTTTGGTTACGCAAAACCAAAATGATCGTGTGGATCTGAGTCTGAGAGGGGTTGGGCTGGGCTTATGTGTTTAGTACAATTTATAGAAGCTGGTTTTAACGAAGATGGGCCTGAGAGGGACGGGTTTGTAAAAGAGGGAGAGGGAGAGGGAGATTTTGTGGGACCCGGGATAAGAATTGGGAAATTTATGTCTGGCTGGAAAGAAGGCAACTGGTCACGGCGCTGAAGATTTTCCACCAAAATCGGACTGTTTGAGGGACGAAATCCGACGGCCACACCACGGATTTGTATTGTCCTTTCTGTTCTGGCAATGTCGGCAGGAAGGGTAAGATGTGCCGGAATGAAACCCATCGCGTTTTGCTCTACCTTTAACCTAGCAGCCATGAAGTTAATACCTCTTTCTGATTGGTTGGAAACGGTAATCAGTCCTCTACATTGATCTCCTATGATTCCAGAGTGTTGGTGAGGCTGGTTTTTGAGGAGAGCAGCAGTGTTGGGATCATAAACGTCTCTTTGATAATACTATTTATAATGTAGTCTTGTTCTGTTGAAGGGCCTCATGCGAAATTGTGA

mRNA sequence

ATGGCGGTTGGAGACTTGAGGAGCTTTGAGGAACTGAAAGTTATTAACAAGGAGCAAGAAACAAAGGTGTGTTACCATGAAAGCAAAGTTCAGAATTTGGTAATTGGCTACCTCATTTTCGGACGATTGCTCTTCTCTGGATGCTGCCACTATGTTGTGTCGGACCCAATACCAACAGAATATAATCCGGAAGGAAGAAGGGTAAGATGTGCCGGAATGAAACCCATCGCGTTTTGCTCTACCTTTAACCTAGCAGCCATGAAGTTAATACCTCTTTCTGATTGGTTGGAAACGTCTTGTTCTGTTGAAGGGCCTCATGCGAAATTGTGA

Coding sequence (CDS)

ATGGCGGTTGGAGACTTGAGGAGCTTTGAGGAACTGAAAGTTATTAACAAGGAGCAAGAAACAAAGGTGTGTTACCATGAAAGCAAAGTTCAGAATTTGGTAATTGGCTACCTCATTTTCGGACGATTGCTCTTCTCTGGATGCTGCCACTATGTTGTGTCGGACCCAATACCAACAGAATATAATCCGGAAGGAAGAAGGGTAAGATGTGCCGGAATGAAACCCATCGCGTTTTGCTCTACCTTTAACCTAGCAGCCATGAAGTTAATACCTCTTTCTGATTGGTTGGAAACGTCTTGTTCTGTTGAAGGGCCTCATGCGAAATTGTGA

Protein sequence

MAVGDLRSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSGCCHYVVSDPIPTEYNPEGRRVRCAGMKPIAFCSTFNLAAMKLIPLSDWLETSCSVEGPHAKL
Homology
BLAST of Lsi09G000610 vs. ExPASy TrEMBL
Match: A0A5A7TLI0 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00770 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1  MAVGDLRSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          MA GDLRSFEE+ VI KEQE KVCYHE+KVQNLVIGYL+FGRLL  G
Sbjct: 1  MASGDLRSFEEVTVIYKEQEEKVCYHENKVQNLVIGYLVFGRLLIFG 47

BLAST of Lsi09G000610 vs. ExPASy TrEMBL
Match: A0A0A0KND2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139800 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.5e-10
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  MAVGDLRSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          M   DLRSF+ELKVI KEQE +VC+H+SKVQNLVIGYLIFGRLL  G
Sbjct: 1  MEFRDLRSFQELKVIYKEQEERVCHHDSKVQNLVIGYLIFGRLLIFG 47

BLAST of Lsi09G000610 vs. ExPASy TrEMBL
Match: A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1  MAVGDL-RSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          MA+G+L R FEELK IN++QE++V Y+E+KVQN+V GYLIF RL F G
Sbjct: 1  MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFG 48

BLAST of Lsi09G000610 vs. ExPASy TrEMBL
Match: A0A5N5F164 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_032206 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-05
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 7  RSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          +SF+ELK+IN++QE +VCYHE++ +NL IGYL+   L F G
Sbjct: 8  KSFKELKIINRKQEKRVCYHETRARNLTIGYLLLQALFFLG 48

BLAST of Lsi09G000610 vs. ExPASy TrEMBL
Match: A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 1  MAVGDL-RSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          MAVG+L R F ELK IN++QE++V YHE+K Q +V GYLI  RL F G
Sbjct: 1  MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFG 48

BLAST of Lsi09G000610 vs. NCBI nr
Match: KAA0042577.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05981.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1  MAVGDLRSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          MA GDLRSFEE+ VI KEQE KVCYHE+KVQNLVIGYL+FGRLL  G
Sbjct: 1  MASGDLRSFEEVTVIYKEQEEKVCYHENKVQNLVIGYLVFGRLLIFG 47

BLAST of Lsi09G000610 vs. NCBI nr
Match: XP_011654634.1 (uncharacterized protein LOC105435426 isoform X1 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 1  MAVGDLRSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLL 45
          M   DLRSF+ELKVI KEQE +VC+H+SKVQNLVIGYLIFGRLL
Sbjct: 1  MEFRDLRSFQELKVIYKEQEERVCHHDSKVQNLVIGYLIFGRLL 44

BLAST of Lsi09G000610 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-06
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1  MAVGDL-RSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          MA+G+L R FEELK IN++QE++V Y+E+KVQN+V GYLIF RL F G
Sbjct: 1  MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFG 48

BLAST of Lsi09G000610 vs. NCBI nr
Match: KAG7016840.1 (hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-05
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 1  MAVGDL-RSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          MA G+L R  +EL  +N++QETKVCYH++KVQN+V GYLI+ RL F G
Sbjct: 36 MAHGELKRRIKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFFYG 83

BLAST of Lsi09G000610 vs. NCBI nr
Match: KAG6579338.1 (hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-05
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 1  MAVGDL-RSFEELKVINKEQETKVCYHESKVQNLVIGYLIFGRLLFSG 48
          MA G+L R F+EL  +N++QETKVCYH++KVQN+V GYLI+ RL   G
Sbjct: 1  MAHGELKRRFKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFIYG 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TLI01.1e-1180.85WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0KND23.5e-1076.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139800 PE=4 SV=1[more]
A0A6J1DSQ01.8e-0664.58uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5N5F1647.5e-0556.10Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A6J1DX741.7e-0460.42uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
KAA0042577.12.2e-1180.85WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
XP_011654634.12.1e-0979.55uncharacterized protein LOC105435426 isoform X1 [Cucumis sativus][more]
XP_022157182.13.7e-0664.58uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
KAG7016840.14.1e-0560.42hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6579338.14.1e-0560.42hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G000610.1Lsi09G000610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane