Lsi09G000400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G000400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor TRY
Location	chr09: 362888 .. 364358 (+)
RNA-Seq Expression	Lsi09G000400
Synteny	Lsi09G000400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGATGTGTCATATCTGAATATGTGTGTGTGTGTGTGCAGTGCAGTTGGGGAGAAGGTTAGCTGAACTGAACACAGGCAATAGACCATTTCCCCAGGTTCCCAACTACCAGTTGAATATAATATTTTGGGTGAGATTACAAGACTCTGCACTGCCTAAAACAATCAGAGTGGAGAAAGAAGGTGACATATCAGAGAGTTTTAGGCACCCATTTCAAGTTTAGTTGGTGCTCTCTCACAGCTGTATTAAACTATTACCCATGTTTATCTGTCTGCTTATCTGTTTTTAGTTGGTGGGTGCTGAGCTTATATCCACACTTTTGATTATGGCAAAAAACTAGGATTTTTTTTCTTTTTCTTTTTTGACATCTCTTAGTCCTAAAGGAATGAAACTACTACATGACCTTCCCCCTAGAACAGCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTATCTCTAAGATTTCAATATTTTAATCTTGTCTTTTATCCCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAACCAACAAACTTACTTCCCAAAGTTTGGTGGGAAGAAGAAAATACAGGCATGCACATAAACTTAAATTTCCCCGTGGATGTTTCAAACCTCTCTATCCCAGTTTTTCCTAAAATTCTTTCATCCCCAATTCTTTAGCTTCCTGTTTTTGTGCCGTCTCTAATCTTTGAGGAAACATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGGTTTCTTTCATTCTTGATTAACTCGATTTTTCTACTTTCCATGTCTAATTACCCATCTTGAAGTTGGTCTCTTCTTCATAATTTTGATGATATTTTAAATCCTACTTCCATTTTGTGAATTTGTGGCTTATTATCTAACAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTAAGTTGTGTTCAAACTACAAAGCAACCCAGATTTATAGGATTCTCCCACCTATCTCAACAAGAATGGAGATAGATTCTGTTCTCTCTCCATCATTGCTTTCCATTTCCAATTACCTCAAGCATCTAAGTTTCTAAGAAAATGGCTTTTCATTTCAGGTGGGATCTAATAGCAGGCAGAATTCCGGGGCGGAAACCAGAAGAGATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACAGATAGATACAGGCAGTGAGGATTCAGTCAATTAAGTCTTCAAAGACTTTCTGATGGGTTCTCTACTTCCTCTTTTGTGGTTTCCCTGAAGATAACCATCTCCCTAATAGCTTTAGTGTATTGCAAGTACCCTATCTAAGAACACATGGTATGGAACTGAGCTATTTTTTTCAATCAAATAACACAGTAAAATTTATGATTCCAAATC

mRNA sequence

ATAAGATGTGTCATATCTGAATATGTGTGTGTGTGTGTGCAGTGCAGTTGGGGAGAAGGTTAGCTGAACTGAACACAGGCAATAGACCATTTCCCCAGGTTCCCAACTACCAGTTGAATATAATATTTTGGGTGAGATTACAAGACTCTGCACTGCCTAAAACAATCAGAGTGGAGAAAGAAGGTGACATATCAGAGAGTTTTAGGCACCCATTTCAAGTTTAGTTGGTGCTCTCTCACAGCTGTATTAAACTATTACCCATGTTTATCTGTCTGCTTATCTGTTTTTAGTTGGTGGGTGCTGAGCTTATATCCACACTTTTGATTATGGCAAAAAACTAGGATTTTTTTTCTTTTTCTTTTTTGACATCTCTTAGTCCTAAAGGAATGAAACTACTACATGACCTTCCCCCTAGAACAGCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTATCTCTAAGATTTCAATATTTTAATCTTGTCTTTTATCCCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAACCAACAAACTTACTTCCCAAAGTTTGGTGGGAAGAAGAAAATACAGGCATGCACATAAACTTAAATTTCCCCGTGGATGTTTCAAACCTCTCTATCCCAGTTTTTCCTAAAATTCTTTCATCCCCAATTCTTTAGCTTCCTGTTTTTGTGCCGTCTCTAATCTTTGAGGAAACATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTAATAGCAGGCAGAATTCCGGGGCGGAAACCAGAAGAGATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACAGATAGATACAGGCAGTGAGGATTCAGTCAATTAAGTCTTCAAAGACTTTCTGATGGGTTCTCTACTTCCTCTTTTGTGGTTTCCCTGAAGATAACCATCTCCCTAATAGCTTTAGTGTATTGCAAGTACCCTATCTAAGAACACATGGTATGGAACTGAGCTATTTTTTTCAATCAAATAACACAGTAAAATTTATGATTCCAAATC

Coding sequence (CDS)

ATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTAATAGCAGGCAGAATTCCGGGGCGGAAACCAGAAGAGATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA

Protein sequence

MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

Homology

[Close]

BLAST of Lsi09G000400 vs. ExPASy Swiss-Prot
Match: Q8GV05 (Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-26
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ KI   +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of Lsi09G000400 vs. ExPASy Swiss-Prot
Match: O22059 (Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.4e-21
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 72

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 73 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of Lsi09G000400 vs. ExPASy Swiss-Prot
Match: B3H4X8 (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-20
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +KQ+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of Lsi09G000400 vs. ExPASy Swiss-Prot
Match: Q9M157 (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.8e-20
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MDNHRHQKQAK---ITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIP 60
          MDNHR  KQ K   I    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIP
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIP 60

Query: 61 GRKPEEIERYWIM 71
          GR   EIER+W+M
Sbjct: 61 GRTAGEIERFWVM 73

[Close]

BLAST of Lsi09G000400 vs. ExPASy Swiss-Prot
Match: Q84RD1 (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  KQAKIT--PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIE 67
          +Q K T    +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIE
Sbjct: 16 RQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIE 75

Query: 68 RYWIMTHLEGFGKRRR 82
          RYWIM + + F  +RR
Sbjct: 76 RYWIMRNSDYFSHKRR 91

[Close]

BLAST of Lsi09G000400 vs. ExPASy TrEMBL
Match: A0A5D3C2B2 (Transcription factor TRY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00630 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.4e-40
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKQAKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. ExPASy TrEMBL
Match: A0A1S4DSB1 (transcription factor TRY OS=Cucumis melo OX=3656 GN=LOC103482948 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.4e-40
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKQAKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. ExPASy TrEMBL
Match: I6NF75 (R3 MYB transcription factor OS=Cucumis sativus OX=3659 GN=TRY PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKI+PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. ExPASy TrEMBL
Match: A0A6J1IC17 (transcription factor TRY-like OS=Cucurbita maxima OX=3661 GN=LOC111471570 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.6e-38
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          M+NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MNNHRQQKHAKLPPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. ExPASy TrEMBL
Match: A0A6J1KAI4 (transcription factor TRY-like OS=Cucurbita maxima OX=3661 GN=LOC111491604 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHR+Q+QAK TPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGF  RRRG
Sbjct: 61 PEEIERYWIMTHLEGFAVRRRG 82

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: XP_016898876.1 (PREDICTED: transcription factor TRY [Cucumis melo] >KAA0042563.1 transcription factor TRY [Cucumis melo var. makuwa] >TYK05967.1 transcription factor TRY [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKQAKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: XP_038875738.1 (transcription factor TRY [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKQAKIT LESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKITLLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: XP_031742154.1 (transcription factor TRY [Cucumis sativus] >AET79925.1 R3 MYB transcription factor [Cucumis sativus] >KGN49883.1 hypothetical protein Csa_000375 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKI+PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: XP_022973073.1 (transcription factor TRY-like [Cucurbita maxima] >XP_023549596.1 transcription factor TRY-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          M+NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MNNHRQQKHAKLPPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: XP_022996343.1 (transcription factor TRY-like [Cucurbita maxima] >KAG6605768.1 Transcription factor TRY, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHR+Q+QAK TPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGF  RRRG
Sbjct: 61 PEEIERYWIMTHLEGFAVRRRG 82

[Close]

BLAST of Lsi09G000400 vs. TAIR 10
Match: AT5G53200.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 3.9e-27
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ KI   +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of Lsi09G000400 vs. TAIR 10
Match: AT2G46410.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 3.8e-22
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 72

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 73 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of Lsi09G000400 vs. TAIR 10
Match: AT2G30424.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-21
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +KQ+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of Lsi09G000400 vs. TAIR 10
Match: AT4G01060.3 (CAPRICE-like MYB3 )

HSP 1 Score: 97.4 bits (241), Expect = 5.5e-21
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MDNHRHQKQAK---ITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIP 60
          MDNHR  KQ K   I    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIP
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIP 60

Query: 61 GRKPEEIERYWIM 71
          GR   EIER+W+M
Sbjct: 61 GRTAGEIERFWVM 73

[Close]

BLAST of Lsi09G000400 vs. TAIR 10
Match: AT2G30420.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 7.2e-21
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  KQAKIT--PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIE 67
          +Q K T    +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIE
Sbjct: 16 RQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIE 75

Query: 68 RYWIMTHLEGFGKRRR 82
          RYWIM + + F  +RR
Sbjct: 76 RYWIMRNSDYFSHKRR 91

The following BLAST results are available for this feature:

BLAST of Lsi09G000400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GV05	5.6e-26	67.50	Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1	[more]
O22059	5.4e-21	61.04	Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1	[more]
B3H4X8	2.7e-20	57.14	MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 ...	[more]
Q9M157	7.8e-20	61.64	MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 ...	[more]
Q84RD1	1.0e-19	60.53	MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 ...	[more]

BLAST of Lsi09G000400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2B2	5.4e-40	97.56	Transcription factor TRY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4DSB1	5.4e-40	97.56	transcription factor TRY OS=Cucumis melo OX=3656 GN=LOC103482948 PE=4 SV=1	[more]
I6NF75	1.2e-39	97.56	R3 MYB transcription factor OS=Cucumis sativus OX=3659 GN=TRY PE=2 SV=1	[more]
A0A6J1IC17	8.6e-38	93.90	transcription factor TRY-like OS=Cucurbita maxima OX=3661 GN=LOC111471570 PE=4 S...	[more]
A0A6J1KAI4	1.9e-37	93.90	transcription factor TRY-like OS=Cucurbita maxima OX=3661 GN=LOC111491604 PE=4 S...	[more]

BLAST of Lsi09G000400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016898876.1	1.1e-39	97.56	PREDICTED: transcription factor TRY [Cucumis melo] >KAA0042563.1 transcription f...	[more]
XP_038875738.1	2.5e-39	98.78	transcription factor TRY [Benincasa hispida]	[more]
XP_031742154.1	2.5e-39	97.56	transcription factor TRY [Cucumis sativus] >AET79925.1 R3 MYB transcription fact...	[more]
XP_022973073.1	1.8e-37	93.90	transcription factor TRY-like [Cucurbita maxima] >XP_023549596.1 transcription f...	[more]
XP_022996343.1	3.9e-37	93.90	transcription factor TRY-like [Cucurbita maxima] >KAG6605768.1 Transcription fac...	[more]

BLAST of Lsi09G000400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53200.1	3.9e-27	67.50	Homeodomain-like superfamily protein	[more]
AT2G46410.1	3.8e-22	61.04	Homeodomain-like superfamily protein	[more]
AT2G30424.1	1.9e-21	57.14	Homeodomain-like superfamily protein	[more]
AT4G01060.3	5.5e-21	61.64	CAPRICE-like MYB3	[more]
AT2G30420.1	7.2e-21	60.53	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 26..74 e-value: 8.4E-6 score: 35.3
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 29..68 e-value: 3.27819E-6 score: 38.3254
None	No IPR available	GENE3D	1.10.10.60		coord: 30..74 e-value: 1.8E-9 score: 39.3
None	No IPR available	PANTHER	PTHR47998:SF12	MYB-LIKE TRANSCRIPTION FACTOR ETC3	coord: 1..79
None	No IPR available	PANTHER	PTHR47998	TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1	coord: 1..79
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 31..69 e-value: 3.0E-7 score: 30.5
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 31..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G000400.1	Lsi09G000400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding