Lsi09G000040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G000040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATPase family AAA domain-containing protein 1-like
Location	chr09: 33490 .. 37326 (+)
RNA-Seq Expression	Lsi09G000040
Synteny	Lsi09G000040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGCGGTTCGTCCGAGACCAGGTTCGTACAGGAATTGCTTCTCTACGCAGCCAGCGCCGCCTTGAGCTGCTTGGTTCTCTTTGCTGGCCTACGCCACCTCGACCCCAACCGCGAGGCCTCCAAGAAGGCTCTCGAGCACAAGAAGGAGATTGCCAAACGCTTGGGCCGCCCTCTCATTCAGACCAACCCTTACGAGGTACCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTAATGAGAAACATTTAATCAGAGTTTCATTGATAGTATGAGATCGCGAGTCATAGTTTAACCTATGTTGTATATGGCATTGTGATTTGGCAACTTTATTCGTTATAGCTGCTTTTCAGTTCTGATGTGTCATATCTATTCTTATAGAGAATGCTCGTGTGATGGTCCTTGCTGCTACAAATCGCCCGTCTGAACTGGATGAAGCTATACTTCGACGTCTTCCACAAGCCTTTGAGATTGGAATACCTGACCGGAGGGAGAGAGCAGAGATATTAAAGGTGATTTTGAAGGGTGAGCGGGTTGAAAACAATATAGACTATGACCGTGTGGCAAGCTTGTGTGAGGGGTACACAGGTTCAGATATTCTTGAACTGTGCAAGAAAGCTGCTTATTTTCCAATCAGGGATCTCCTTGATGAAGAGAAGAAGGGGAAACAATCTTCTGTGAGTACATTTATCACTTTCTCTTCCCTTCCCATTTGTTTAGGCCTCGTTTGAACTATTTAGTTTTTTATGTTTAGTTTTTTAAAATAAAACTGATGCACGCTACTTTCACCTATTGATTTTTTTGTTATGTTGTATACCTTTTAGGAGTGTTCTTATAAACCAAGCTAAGTTCATATCATAAATGAAATTCTTATTAAATGTTTCTCATAAAAAGAGAGTAGTTATTAAAAACTTGTTTTTGTTTTTGGAATTTGACTACGATAAAAATCATGGTAAAAGAAGTTAGGAATAAACAAGCACAATTTTCAAAAACCAAAACCAAAAAACAAAATGGTTATCAAACGAGGTCTTAGTTACTTGTTTCTTCTGGATGGAGTTTAGATATTTAAGTTGATAACCAATTATTTACATACTAGTGGCTGCTTCCAAGATGAGATCTATATCCCTTTTTATGGGATTCATATCTATGCTACTGTGCTCCCTAGAGGACAATGAAGTTTGGATACTGATCATTTAGGTTTTCATCTTTCAAGGGCTTATGAGATAGATATATTATTTTATGACTTGTTCATCTACTGGCTACTAATGTCCAGTAGAGAGAATGGACGATGAAAAGGAAAGTGGCTTATGAGAGTAATCCTTTGAGGATCGGCAACATGCTAGGGTACTAGACAATTTGATTTTGAAAATGAATCTTTTTGATCAAAGCTCTTCATTGTTATTGTTGTTATTATTATTATTTTTCATTTACCTGGGGGGGTCTGGAGAATGGCTCGGTGACGAAGTTTTGATATTGACATTGACTTTGAGTATGAGTCCATTTGCTATTTATGATGGGACTTTGAATGGTACTGACCTTCGCACGACATGTCGGTTTTTAGGAGCCAAGACCACTGTCGCAGTCAGATTTGGAAAAGGTTCTTGCTACATCAACAAAGACAAAGGTTGCTGCAAGCGAATACACTGGATTGAGCTCTAACTCATCAGGGTGGACAGGGCACAGGGAAGCTGGTGATTATGAGGTTCAAGCAGCAATAAGTGAACTCTCCAAGCTAGTGGTCTCCCAAATCTTGAATATCCAATCCGATACCCGAGATTCGTGAAAGCCCTGACGTCATCAAGGATTCTCGTGACTCGTTTAGTATTAAATAGCATGGATTATCGGAGATTTATCCTTGGTTCGAAGGGTTTGTCTCAAATCTGAAATTTTGAAGTTATGAATGGTTTCTGGTAGTTGCATATTCGAACTTTACTGTATCAAACGTGAAATAGGGATCATATTTATAAAACCGAAACATGTTGGATTAACCCTGTTGATAATCTTTTGTATGGATCCAGGTCATCCTCGGACGATCTTTCTATTGTACCATTGTTGGTTTAGCTTTTTGTATGTTTTTGTCAAAGAAGTTGCAGATTTGAATGAAGCGGGAATTAAAGCTGGGTAGCGATATGATTGAGTGAGTTAAAAGCAGTAAATGATTAAAGAGTATAATATGAAATGGAAGTTTGGTGATTCTATGGTTTGTTGCCTGTTTGATTCTTGGCTTGCCTCTGTCGTCTTAGGTTGTGGATTCTTTTTTGTCCCCTTTGTCACATTTGAGGAACCTAGAATGTGTGAATTATTGCTAATCCTCATAACCATTAAGATTTGAATAAAATTCTCAACCACTCTTGAATTTA

mRNA sequence

ATGGGGAGCGGTTCGTCCGAGACCAGGTTCGTACAGGAATTGCTTCTCTACGCAGCCAGCGCCGCCTTGAGCTGCTTGGTTCTCTTTGCTGGCCTACGCCACCTCGACCCCAACCGCGAGGCCTCCAAGAAGGCTCTCGAGCACAAGAAGGAGATTGCCAAACGCTTGGGCCGCCCTCTCATTCAGACCAACCCTTACGAGAATGCTCGTGTGATGGTCCTTGCTGCTACAAATCGCCCGTCTGAACTGGATGAAGCTATACTTCGACGTCTTCCACAAGCCTTTGAGATTGGAATACCTGACCGGAGGGAGAGAGCAGAGATATTAAAGGAGCCAAGACCACTGTCGCAGTCAGATTTGGAAAAGGTTCTTGCTACATCAACAAAGACAAAGGTTGCTGCAAGCGAATACACTGGATTGAGCTCTAACTCATCAGGGTGGACAGGGCACAGGGAAGCTGGTGATTATGAGGTTCAAGCAGCAATAAGTGAACTCTCCAAGCTAGTGGTCTCCCAAATCTTGAATATCCAATCCGATACCCGAGATTCGTGAAAGCCCTGACGTCATCAAGGATTCTCGTGACTCGTTTAGTATTAAATAGCATGGATTATCGGAGATTTATCCTTGGTTCGAAGGGTTTGTCTCAAATCTGAAATTTTGAAGTTATGAATGGTTTCTGGTAGTTGCATATTCGAACTTTACTGTATCAAACGTGAAATAGGGATCATATTTATAAAACCGAAACATGTTGGATTAACCCTGTTGATAATCTTTTGTATGGATCCAGGTCATCCTCGGACGATCTTTCTATTGTACCATTGTTGGTTTAGCTTTTTGTATGTTTTTGTCAAAGAAGTTGCAGATTTGAATGAAGCGGGAATTAAAGCTGGGTAGCGATATGATTGAGTGAGTTAAAAGCAGTAAATGATTAAAGAGTATAATATGAAATGGAAGTTTGGTGATTCTATGGTTTGTTGCCTGTTTGATTCTTGGCTTGCCTCTGTCGTCTTAGGTTGTGGATTCTTTTTTGTCCCCTTTGTCACATTTGAGGAACCTAGAATGTGTGAATTATTGCTAATCCTCATAACCATTAAGATTTGAATAAAATTCTCAACCACTCTTGAATTTA

Coding sequence (CDS)

ATGGGGAGCGGTTCGTCCGAGACCAGGTTCGTACAGGAATTGCTTCTCTACGCAGCCAGCGCCGCCTTGAGCTGCTTGGTTCTCTTTGCTGGCCTACGCCACCTCGACCCCAACCGCGAGGCCTCCAAGAAGGCTCTCGAGCACAAGAAGGAGATTGCCAAACGCTTGGGCCGCCCTCTCATTCAGACCAACCCTTACGAGAATGCTCGTGTGATGGTCCTTGCTGCTACAAATCGCCCGTCTGAACTGGATGAAGCTATACTTCGACGTCTTCCACAAGCCTTTGAGATTGGAATACCTGACCGGAGGGAGAGAGCAGAGATATTAAAGGAGCCAAGACCACTGTCGCAGTCAGATTTGGAAAAGGTTCTTGCTACATCAACAAAGACAAAGGTTGCTGCAAGCGAATACACTGGATTGAGCTCTAACTCATCAGGGTGGACAGGGCACAGGGAAGCTGGTGATTATGAGGTTCAAGCAGCAATAAGTGAACTCTCCAAGCTAGTGGTCTCCCAAATCTTGAATATCCAATCCGATACCCGAGATTCGTGA

Protein sequence

MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYENARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKEPRPLSQSDLEKVLATSTKTKVAASEYTGLSSNSSGWTGHREAGDYEVQAAISELSKLVVSQILNIQSDTRDS

Homology

[Close]

BLAST of Lsi09G000040 vs. ExPASy Swiss-Prot
Match: Q7ZZ25 (Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-07
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 67  ENARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKEPRPLSQSDLEKVLAT 126
           EN++VMV+ ATNRP ++D AILRR+P AF +G+P+  +R EIL+             L  
Sbjct: 230 ENSQVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILR-------------LIL 289

Query: 127 STKTKVAASEYTGLSSNSSGWTGH------REAGDYEVQAAISELSKLVVSQILNIQSD 180
           S +    A     ++S S G++G       R+A  Y V+  + +     ++Q   +  +
Sbjct: 290 SGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRDYVRKQQMKQIAQQFQLDEE 335

[Close]

BLAST of Lsi09G000040 vs. ExPASy Swiss-Prot
Match: Q7QBW0 (Spastin OS=Anopheles gambiae OX=7165 GN=spas PE=3 SV=6)

HSP 1 Score: 52.0 bits (123), Expect = 8.4e-06
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 67  ENARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEIL-----KEPRPLSQSDL 121
           E  R++V+AATNRP ELDEA LRR P+   + +PDR  R  +L     K+  PLS +DL
Sbjct: 687 EADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADL 745

[Close]

BLAST of Lsi09G000040 vs. ExPASy Swiss-Prot
Match: Q503W7 (Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1b PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 68  NARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILK 111
           N +V+++ ATNRP +LD AILRR+P  F I  P+ R+R +ILK
Sbjct: 232 NCQVIIMGATNRPQDLDSAILRRMPTRFHINQPNVRQRKDILK 274

[Close]

BLAST of Lsi09G000040 vs. ExPASy Swiss-Prot
Match: Q9P7J5 (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 22/42 (52.38%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 69  ARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILK 111
           +RV+VL ATNRP+++DEAI RR+P+ F I +P+  +R +IL+
Sbjct: 227 SRVLVLGATNRPADIDEAIRRRMPKVFSIPLPNAEQRRKILE 268

[Close]

BLAST of Lsi09G000040 vs. ExPASy Swiss-Prot
Match: Q6NW58 (Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 70  RVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEIL-----KEPRPLSQSDLEKV 124
           RV+V+ ATNRP ELDEA+LRR  +   + +P    R ++L     K   PLSQ +L ++
Sbjct: 432 RVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQL 490

[Close]

BLAST of Lsi09G000040 vs. ExPASy TrEMBL
Match: A0A5A7TMF1 (ATPase family AAA domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00350 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64
Identity = 183/392 (46.68%), Postives = 183/392 (46.68%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPELFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    NARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. ExPASy TrEMBL
Match: A0A1S3AUG8 (ATPase family AAA domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103482976 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64
Identity = 183/392 (46.68%), Postives = 183/392 (46.68%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPELFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    NARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. ExPASy TrEMBL
Match: A0A0A0KJE8 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139280 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.5e-63
Identity = 180/392 (45.92%), Postives = 182/392 (46.43%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQEL+LYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELILYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPELFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    +ARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQSARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. ExPASy TrEMBL
Match: A0A6J1H2Q5 (ATPase family AAA domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111459556 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.6e-60
Identity = 179/393 (45.55%), Postives = 179/393 (45.55%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPDLFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    NARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. ExPASy TrEMBL
Match: A0A6J1K2B4 (ATPase family AAA domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111491069 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.6e-60
Identity = 178/393 (45.29%), Postives = 179/393 (45.55%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALIELVILPLKRPDLFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    NARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. NCBI nr
Match: KAG6579307.1 (ATPase family AAA domain-containing protein 1-B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.2 bits (674), Expect = 8.2e-67
Identity = 173/297 (58.25%), Postives = 178/297 (59.93%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           M S SSETRFVQEL+LYAASAALSCLVLF GLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MRSRSSETRFVQELVLYAASAALSCLVLFVGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYEN---------------------------------------------------- 120
           IQTNPYE+                                                    
Sbjct: 61  IQTNPYEDVIALAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDG 120

Query: 121 ------ARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILK------------ 180
                 ARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILK            
Sbjct: 121 FTTDQTARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKVILKGERVESNI 180

Query: 181 -------------------------------------------EPRPLSQSDLEKVLATS 183
                                                      EPRP+SQSDLEKVLATS
Sbjct: 181 DYECVARLCEGYTGSDILELCKKAAYFPVRDLLDEEKKGKQSSEPRPMSQSDLEKVLATS 240

[Close]

BLAST of Lsi09G000040 vs. NCBI nr
Match: XP_008437619.1 (PREDICTED: ATPase family AAA domain-containing protein 1-like [Cucumis melo] >KAA0042539.1 ATPase family AAA domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK05942.1 ATPase family AAA domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 5.0e-64
Identity = 183/392 (46.68%), Postives = 183/392 (46.68%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPELFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    NARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. NCBI nr
Match: XP_004145937.1 (ATPase family AAA domain-containing protein 1 [Cucumis sativus] >KGN49850.1 hypothetical protein Csa_000269 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 9.3e-63
Identity = 180/392 (45.92%), Postives = 182/392 (46.43%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQEL+LYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELILYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPELFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    +ARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQSARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. NCBI nr
Match: XP_038874328.1 (ATPase family AAA domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-62
Identity = 180/392 (45.92%), Postives = 182/392 (46.43%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 35  MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 94

Query: 61  IQTNPYE----------------------------------------------------- 120
           I TNPYE                                                     
Sbjct: 95  IHTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPELFSHGKLLGPQ 154

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 155 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 214

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    NARVMVLAATNRPSELDEA
Sbjct: 215 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 274

[Close]

BLAST of Lsi09G000040 vs. NCBI nr
Match: XP_022958288.1 (ATPase family AAA domain-containing protein 1 [Cucurbita moschata] >XP_023532430.1 ATPase family AAA domain-containing protein 1 [Cucurbita pepo subsp. pepo] >KAG6605803.1 ATPase family AAA domain-containing protein 1-A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035766.1 ATPase family AAA domain-containing protein 1-A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.3 bits (617), Expect = 3.3e-60
Identity = 179/393 (45.55%), Postives = 179/393 (45.55%), Query Frame = 0


Query: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60
           MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL
Sbjct: 1   MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPL 60

Query: 61  IQTNPYE----------------------------------------------------- 120
           IQTNPYE                                                     
Sbjct: 61  IQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLKRPDLFSHGKLLGPQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 180

Query: 181 -----------------------------------------NARVMVLAATNRPSELDEA 184
                                                    NARVMVLAATNRPSELDEA
Sbjct: 181 AIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 240

[Close]

BLAST of Lsi09G000040 vs. TAIR 10
Match: AT4G27680.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 149/389 (38.30%), Postives = 165/389 (42.42%), Query Frame = 0


Query: 4   GSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQT 63
           GSSET+ +QEL+LYAASAA SCLVLFAGLRHLDPNREASKKALEHKKEI+KRLGRPL+QT
Sbjct: 3   GSSETKILQELILYAASAAFSCLVLFAGLRHLDPNREASKKALEHKKEISKRLGRPLVQT 62

Query: 64  NPYE-------------------------------------------------------- 123
           NPYE                                                        
Sbjct: 63  NPYEDVIACDVINPDHIDVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGV 122

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 123 LLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKLQPAII 182

[Close]

BLAST of Lsi09G000040 vs. TAIR 10
Match: AT5G53540.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 8.5e-38
Identity = 132/390 (33.85%), Postives = 154/390 (39.49%), Query Frame = 0


Query: 3   SGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQ 62
           SG  ++ F+++L+LY ASAALS LVL+ GLR LDPNR+A+KK+LEHK+EIAKRLGRPLIQ
Sbjct: 5   SGRKDSNFIEQLILYVASAALSSLVLYVGLRQLDPNRDAAKKSLEHKREIAKRLGRPLIQ 64

Query: 63  TNPYE------------------------------------------------------- 122
           TN YE                                                       
Sbjct: 65  TNQYEDVIACDVINPLHIDVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKG 124

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 125 VLLYGPPGTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKLQPAI 184

Query: 183 ---------------------------------------NARVMVLAATNRPSELDEAIL 184
                                                  NARVMVLAATNRPSELDEAIL
Sbjct: 185 IFIDEVDSFLGQRRSTDNEAMSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAIL 244

[Close]

BLAST of Lsi09G000040 vs. TAIR 10
Match: AT1G62130.1 (AAA-type ATPase family protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-09
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 61  IQTNPYENARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKEPRPLSQSDL 120
           ++TN  E  RV+VLAATNRP +LDEA++RRLP    +G+PD R R++ILK    LS+ DL
Sbjct: 874 LRTN--EKERVLVLAATNRPFDLDEAVIRRLPHRLMVGLPDARSRSKILKV--ILSKEDL 929

[Close]

BLAST of Lsi09G000040 vs. TAIR 10
Match: AT4G24860.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 67   ENARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILK 111
            E  RV+VLAATNRP +LDEA++RRLP+   +G+PD   RA ILK
Sbjct: 957  ERERVLVLAATNRPFDLDEAVIRRLPRRLMVGLPDTSNRAFILK 1000

[Close]

BLAST of Lsi09G000040 vs. TAIR 10
Match: AT1G02890.1 (AAA-type ATPase family protein )

HSP 1 Score: 52.0 bits (123), Expect = 5.9e-07
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 67   ENARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEIL 110
            +  RV+VLAATNRP +LDEA++RRLP+   + +PD   R++IL
Sbjct: 1081 DKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKIL 1123

The following BLAST results are available for this feature:

BLAST of Lsi09G000040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7ZZ25	7.6e-07	31.09	Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=at...	[more]
Q7QBW0	8.4e-06	49.15	Spastin OS=Anopheles gambiae OX=7165 GN=spas PE=3 SV=6	[more]
Q503W7	1.4e-05	53.49	Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=at...	[more]
Q9P7J5	1.9e-05	52.38	Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces ...	[more]
Q6NW58	1.2e-04	42.37	Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2	[more]

BLAST of Lsi09G000040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TMF1	2.4e-64	46.68	ATPase family AAA domain-containing protein 1-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3AUG8	2.4e-64	46.68	ATPase family AAA domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KJE8	4.5e-63	45.92	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139280 PE=3 SV...	[more]
A0A6J1H2Q5	1.6e-60	45.55	ATPase family AAA domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K2B4	3.6e-60	45.29	ATPase family AAA domain-containing protein 1-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Lsi09G000040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579307.1	8.2e-67	58.25	ATPase family AAA domain-containing protein 1-B, partial [Cucurbita argyrosperma...	[more]
XP_008437619.1	5.0e-64	46.68	PREDICTED: ATPase family AAA domain-containing protein 1-like [Cucumis melo] >KA...	[more]
XP_004145937.1	9.3e-63	45.92	ATPase family AAA domain-containing protein 1 [Cucumis sativus] >KGN49850.1 hypo...	[more]
XP_038874328.1	1.2e-62	45.92	ATPase family AAA domain-containing protein 1-like [Benincasa hispida]	[more]
XP_022958288.1	3.3e-60	45.55	ATPase family AAA domain-containing protein 1 [Cucurbita moschata] >XP_023532430...	[more]

BLAST of Lsi09G000040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27680.1	2.6e-47	38.30	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G53540.1	8.5e-38	33.85	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G62130.1	2.8e-09	55.00	AAA-type ATPase family protein	[more]
AT4G24860.1	2.4e-08	61.36	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G02890.1	5.9e-07	53.49	AAA-type ATPase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..100 e-value: 1.3E-15 score: 59.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 67..129
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 17..98 e-value: 4.6E-5 score: 23.8
None	No IPR available	GENE3D	1.10.8.60		coord: 101..149 e-value: 1.3E-15 score: 59.4
None	No IPR available	PANTHER	PTHR45644:SF21	ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 67..110 coord: 1..68
None	No IPR available	PANTHER	PTHR45644	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	coord: 67..110 coord: 1..68
IPR003960	ATPase, AAA-type, conserved site	PROSITE	PS00674	AAA	coord: 71..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G000040.1	Lsi09G000040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity