Lsi08G016840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G016840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Location	chr08: 24581280 .. 24584734 (+)
RNA-Seq Expression	Lsi08G016840
Synteny	Lsi08G016840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATCTTCTCTTCTTTACTTCCAAATTTTGACTTGAAAGTTGAATCAGATAGCCAAGGGAACATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGTTATTTTACTTATTTATTTTTCCTTTTTTGCTATTCGCTCTTTTTCGATTTGGAGGTATGTTGGAACTATACGAGTCAGTAATGTAATGTCGTCTTCTTCGGCTCCAAGATTTGGCATTTCTCAATTTCAATGGCCACAACTTTTTATTTTTTTTAAAACTAGTTTCTTGGATTTAATCCATGCTATTTTCTGCTTCTATTTCCCTAGAGAGGTGATAAATTTTCTTTTCTAAAATATAAGTATTGACCCCAGTTCTTTAAAGTACACTTACTGGGTTGGCTCATCTATTTTTACCCATCCACGATCAAGATATGGGATTTTATGCATTTCTCTACTTACTGAAGATAATCATCATGACGGCTCAGTGTTTTTATGCTAAATGTCGCTGCTTCTTTAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCTAGTTTTAGGCTTTTAGCTCATTCCATATTGTCAAAATTAGCTCACCTGAAATTTCTAACATATACACTTCGATAAGATATTAAGATCTTTGAGGTTTATTGTAGTTAGACGATTCTTCAAGTTATTGCAATCTGATATTCGTGTTTTGTAATTGATACATGTTTTGTTAAACCACCTATCAGAACCATATTCTAACTTTTTATTGATTCCATAATCCACTGAGGTAATCATGTTCCGTTATGCCCCCATTTGTTCGGACGTAACCGGTTGTTATGGTAAATAGCGATTTCCCGTTTTTCATGCTTCCAAAAAGACATAAGTATGAACTTGTCGTGTGATAAATTGATCGAGAGGCCTTCCAATTGTTTGTTAATCTATAGTTTCTGTCTCTATGTTAAATTACTGTTACCATTAGAAACATAACTGCTTGGTTAGAGTTAATTCAAAAAAGGAAAAAAAAAGTAACATTTGATAAATTTATAGAAATGCCATGCAATTGTGTTTTAACCTTTGTTTTCTGTTTCTATGTTAAATTACTGCTACTAGAAGACTAATTGTTTGGTTAGACTTAATTTAAGATCTTGGATTGTTTGTGCTATTTTCCCGTGGGTTTGAATTTTTGTTTGTTAATGAGGTTTGATACATTTACTGTTGATTTTGAAATCTTGATCAGATGCCTGTGCAAGAATTTTTAATTCAATATCTTCTGATTCAGTATCATTTTTAAGTTATCACTAATTCCGGACAACATACTAATGACAAGCAGTGATTTAACTCTATGAATTGTTAAAGTTTCTGGTGTAATATTAATTTCTAGAATTGAATCAAATGAATCTCTACCTCTAAATGAGGGGAGATGACCTTTATTTATAGGAAAAATGTGAGTACAAGTTTGTTAAAGAAAGCTAACAAATCAAAATAACAAACAAACTATTTAACAACTAACTCACTTAACAACTAACAATTGACTGTTTGACTAACAAACTAAAACTTACAAACTGTAGTTTTGTTATTACACCATATTCCACCCCCTTAAGATTAGACTCATCCTCAAGGAAATTATGATGCCAATTGGAAATCATCAGGGGCAAAGTAAGGCTTTAAGTTAGCAACATTAAATACCGGATTGATAGGTAAATCACTTGGTAATTCAATGCGGTATGCATTGGAACCATACTTCTCCAACACTTTGAAGGGTCCCAATTGTCTATCTTTCAATTTGTTGTAAGTGCCGGTAGGAAATCTAGCTTTTTGTAGATGAATCATGACTAAGTCTCCTTCTTCAAAATCAACTACCCTTCGAGATTTGTCTTTAGTTTCTTTGTGAGATAAAGTGGTCTTCTCTAAATGATCGTGGACTTCTCGATGAAGCTCTTCAATTCATTCAACCATGTTCTCCGCTTCGATGCTAACATCCACAAATGAAGGAAGATTAGCAAGGTCAAAAGTGAGACGAGGAGCTCAAATGTATACTACTTCAAAAGGACATCTTCCGGTAGATCTATTCTTCATGTTATTAAAAGCAAATCGGCTTGTGCTAGGGACAAATTCCATTGTTTTGGCCTTGAACCACTTAAGCATCGAATGAGATTCCCCAACGTTCTATTAGTCACCTCTGTTTAACCGTTAGTTTGAGGATGTGAAGTAGTGCTGAATTTCAAAGTAGTATCAAATTTCTTCCACATAGTGCGCCAGAAATGGCTAAAGAACTTCACATTTCGATCTGAAACAATTGTCTTAGGAACTTTATGAAGTCGAACAACTTCTCTAAAGAAGAGATTGGCTATATAAATTGCATCGTTTGTCTTCTTACAAGCCAAGAAGTGAGCCATCTTGCTGAATCGATCTACGACTACCATTACAGCATCATAACCTCTTTGTGTCTTTGGTAATCCAAGGACAAAATCAATAGACAAATCCTCCCAAATAGATGTAGGTATAGGCAGCGGCGAATATAGGCCAACATTAGTGCTTGTGCCTTTGGCAAATGGAACATCTTTTAACAAAGTTATTTGTATCTCTTTGAAGTTGCGGCCAATAAAACTGAGTTGATACTATTTCAAATGTTTTATTTTGGCCAAAATGTCCAGCCGAGCCTCCTGAATGGGCGTTTTTTATAAGTGCCTCTCGAAGAGAAGTATGTGGAATACACAGTTGTTCTCCTTTGAATAAGAAACCATCCACAATATGGAAGTCCTTCAACCTGAACATAGGTGGGCAACGTGTGCAAGACCAAGTGGCGGAGGAAACACCCGTCCTTTCTTCAAGAAGTACAACGGTATGCTTGCTGTCCGTTGAAGACTCTTTGGGAGATATTCATGAAAAGTTGGATAGTGTGCAAGAATCGATGAAAACACTAGCGAGAAAGATGGAATTACTGACATCTCCTCAACATAGCGAAAATGTCCCGACATTCATTCAAGAATGAGGGAGTTGGGAGGAGAGGCAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA

mRNA sequence

CGATCTTCTCTTCTTTACTTCCAAATTTTGACTTGAAAGTTGAATCAGATAGCCAAGGGAACATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA

Coding sequence (CDS)

ATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA

Protein sequence

MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGMVLVDQGMCNISKKKSKKGLKEITYLGDNSKKSKDHDKIFKKDIKNSKTGILQANTTKKMSSMIQEEGKKNDMK

Homology

[Close]

BLAST of Lsi08G016840 vs. ExPASy TrEMBL
Match: A0A6J1K524 (uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491756 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAAC +WKTLRISSSSAR LL RSS SPSASH VSKPT+SA LP AKPSASSR SV KLT
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSE M
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEAM 104

[Close]

BLAST of Lsi08G016840 vs. ExPASy TrEMBL
Match: A0A6J1HCT7 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462447 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.7e-36
Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKL 60
           MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           TNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG 104

[Close]

BLAST of Lsi08G016840 vs. ExPASy TrEMBL
Match: A0A0A0L605 (Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.6e-36
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LT
Sbjct: 1   MAACCSWKTIPISSSSARGLLHRSSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCLS+ M
Sbjct: 61  NFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSKAM 104

[Close]

BLAST of Lsi08G016840 vs. ExPASy TrEMBL
Match: A0A6J1E309 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111025568 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 7.8e-36
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACC+WKTLR+SSSS R L+ RSS S SASHFVS+PT   GLP AKP+AS R SVQKLT
Sbjct: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           N RLPVELSSVQSLMPLH+VTASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEG 103

[Close]

BLAST of Lsi08G016840 vs. ExPASy TrEMBL
Match: A0A5D3D8K9 (Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00010 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSARALLHR S SPSASHFVS PT+S GL  A+P+ASSR SVQ+LT
Sbjct: 1   MAACCSWKTIPISSSSARALLHRPSSSPSASHFVSIPTMSGGLHSARPAASSRFSVQRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NF LPVEL+S+QSLMPL +VTASALFTSLLS HNNS  CLS+ M
Sbjct: 61  NFSLPVELASMQSLMPLRSVTASALFTSLLSFHNNSRRCLSKAM 104

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: XP_038885251.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 4.8e-40
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKTLRISSSSAR LLHRSS SPSASHFVSKPT+SAGLP AKP ASSR  VQKLT
Sbjct: 1   MAACCSWKTLRISSSSARTLLHRSSSSPSASHFVSKPTMSAGLPSAKPPASSRFYVQKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           NFRLPVELSSVQSLMPLH+VTASALFTSLLSLHNNSWG LSEG
Sbjct: 61  NFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGYLSEG 103

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: XP_022996536.1 (uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953.1 uncharacterized protein LOC111805899 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-37
Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAAC +WKTLRISSSSAR LL RSS SPSASH VSKPT+SA LP AKPSASSR SV KLT
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSE M
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEAM 104

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: XP_022961783.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6598206.1 hypothetical protein SDJN03_07984, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 5.5e-36
Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKL 60
           MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           TNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG 104

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: KAG7029191.1 (hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 5.5e-36
Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKL 60
           MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KL
Sbjct: 44  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           TNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSEG
Sbjct: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG 147

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: XP_004145570.1 (uncharacterized protein LOC101210124 [Cucumis sativus] >KGN55566.1 hypothetical protein Csa_012846 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 9.4e-36
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LT
Sbjct: 1   MAACCSWKTIPISSSSARGLLHRSSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCLS+ M
Sbjct: 61  NFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSKAM 104

[Close]

BLAST of Lsi08G016840 vs. TAIR 10
Match: AT1G70350.1 (unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-15
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASS-RLSVQKL 60
           MAA    + L+ SSSS + L  RSS + SA    SK   SAG+ F   S+SS R S+++L
Sbjct: 1   MAANGVRRALQASSSSGKILFGRSSAATSA----SKIGKSAGIAFGNGSSSSTRPSLRRL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           T  R+PVELS+  SL+PLH+VTASAL TSLLSL N +W CLSEG
Sbjct: 61  TFSRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEG 100

[Close]

BLAST of Lsi08G016840 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-05
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 15  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQ 74
           +S+  +   SS   S +  +SK  +  + LP    S+S   +  ++  +FRLPVELS   
Sbjct: 2   ASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVELSCCL 61

Query: 75  SLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           S++PLH+  ASA   S LS+ + SWG + +G+
Sbjct: 62  SMLPLHSAIASARLISSLSVESKSWGLVPQGI 93

[Close]

BLAST of Lsi08G016840 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 15  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQ 74
           +S+  +   SS   S +  +SK  +  + LP    S+S   +  ++  +FRLPVELS   
Sbjct: 2   ASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVELSCCL 61

Query: 75  SLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           S++PLH+  ASA   S LS+ + SWG + +G
Sbjct: 62  SMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]

BLAST of Lsi08G016840 vs. TAIR 10
Match: AT4G17310.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 7.8e-04
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 14  SSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNF---RLPVELSS 73
           +S+ R L +R+S S   S   S    + G   A  SA  RL  Q   +F   R P EL  
Sbjct: 2   ASACRKLFNRASVSSLKSTLRS----TTGSTSAASSAGFRLPSQPTRHFSFSRCPSELGC 61

Query: 74  VQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           VQSL+PLH+  A+A  TS LS  + S   LS+G
Sbjct: 62  VQSLLPLHSTVAAARLTSCLSTTSRSSRALSQG 90

The following BLAST results are available for this feature:

BLAST of Lsi08G016840 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G016840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K524	1.4e-37	86.54	uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HCT7	2.7e-36	86.54	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita mos...	[more]
A0A0A0L605	4.6e-36	80.77	Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190...	[more]
A0A6J1E309	7.8e-36	82.52	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha...	[more]
A0A5D3D8K9	2.3e-32	77.88	Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. maku...	[more]

BLAST of Lsi08G016840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885251.1	4.8e-40	91.26	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida]	[more]
XP_022996536.1	2.9e-37	86.54	uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953...	[more]
XP_022961783.1	5.5e-36	86.54	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita mosch...	[more]
KAG7029191.1	5.5e-36	86.54	hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004145570.1	9.4e-36	80.77	uncharacterized protein LOC101210124 [Cucumis sativus] >KGN55566.1 hypothetical ...	[more]

BLAST of Lsi08G016840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70350.1	4.4e-15	54.81	unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bac...	[more]
AT1G55205.1	9.2e-05	34.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55205.2	1.2e-04	35.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G17310.1	7.8e-04	39.78	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..177
None	No IPR available	PANTHER	PTHR33156:SF2	OS01G0738000 PROTEIN	coord: 1..105
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G016840.1	Lsi08G016840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0030488	tRNA methylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008173	RNA methyltransferase activity