Lsi08G016110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G016110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	chr08: 24066698 .. 24067359 (+)
RNA-Seq Expression	Lsi08G016110
Synteny	Lsi08G016110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACAACCTTTTTTCTTTCCCTTTCCTTATAAATTTCCACATCAAAACATGCCTCCGCCGCTGCATCTTTCTTCATCCTTCTTCAAATTCTTCTTCTAAAGAAGGGTCATTCTCTTCTCTATATTGCCATGGCCACCGCCAACAGATGGTTAAAGCCTGAGGTTTTTTTTTTTTTTTTTTTCCTTTCATTTTCTATTACTTTCTGTTTGGCTGCTGAGAAAAAACATGAAGAAGACAAGAAATTTACCATTCAAACTTTGATCTCCTTGAATACATATGCAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGTAAATATTTCAAGTTGTAGAAAAAATATGTTCAATATAATATGGAAATGTAAATATTTTGGTGAAGAGAAGAGAATGGGAGCATTCTGTTCAGAGATTAGGAAAAAAAAAGTTATGATTTGTTCTAAATGGAACATGACAGGGTTATCAAAGAGAAGAGAACTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGCCTTAGGAAGTTCCTTAGAACAAGACCCCCTCAGATTATGCCCTCCATCAACAAATTCTTCTCAGATCCAAACTAA

mRNA sequence

TTCACAACCTTTTTTCTTTCCCTTTCCTTATAAATTTCCACATCAAAACATGCCTCCGCCGCTGCATCTTTCTTCATCCTTCTTCAAATTCTTCTTCTAAAGAAGGGTCATTCTCTTCTCTATATTGCCATGGCCACCGCCAACAGATGGTTAAAGCCTGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAACTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGCCTTAGGAAGTTCCTTAGAACAAGACCCCCTCAGATTATGCCCTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Coding sequence (CDS)

ATGGCCACCGCCAACAGATGGTTAAAGCCTGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAACTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGCCTTAGGAAGTTCCTTAGAACAAGACCCCCTCAGATTATGCCCTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Protein sequence

MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEKYAEHGLRKFLRTRPPQIMPSINKFFSDPN

Homology

[Close]

BLAST of Lsi08G016110 vs. ExPASy TrEMBL
Match: A0A0A0LMX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.2e-42
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+R AGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. ExPASy TrEMBL
Match: A0A6J1HDB5 (uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC111462563 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.2e-42
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA VGVAVGICGMQLVRNITTNPEVRV KE+R AGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. ExPASy TrEMBL
Match: A0A1S4DVM4 (uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+R AGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. ExPASy TrEMBL
Match: A0A6J1BUB6 (uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004829 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MA  NRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKR AGVLDNFEEGEK
Sbjct: 1  MAATNRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTR PQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRSPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. ExPASy TrEMBL
Match: A0A6P4AFV5 (uncharacterized protein LOC107428374 OS=Ziziphus jujuba OX=326968 GN=LOC107428374 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MAT NRWL+PEVYPLFA+VGVAVGICGMQLVRNITTNPEVRV KE R AGVLDN +EGEK
Sbjct: 1  MATVNRWLRPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKENRAAGVLDNHKEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLR RPPQIMPSIN FFSDPN
Sbjct: 61 YAEHGLRKFLRNRPPQIMPSINNFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. NCBI nr
Match: XP_038885463.1 (uncharacterized protein LOC120075838 [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 8.9e-43
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MA+ANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDN+EEGEK
Sbjct: 1  MASANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNYEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. NCBI nr
Match: XP_004142944.1 (uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical protein Csa_018775 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+R AGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. NCBI nr
Match: XP_022961943.1 (uncharacterized protein LOC111462563 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA VGVAVGICGMQLVRNITTNPEVRV KE+R AGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. NCBI nr
Match: XP_016900034.1 (PREDICTED: uncharacterized protein LOC107990723 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+R AGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. NCBI nr
Match: XP_023545968.1 (uncharacterized protein LOC111805233 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA VGVAVGICGMQLVRNITTNPEVRV K++R AGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKQRRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Lsi08G016110 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 131.3 bits (329), Expect = 3.7e-31
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 4  ANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEKYAE 63
          A+RWL+PEVYPLFAA GVAVGIC   L+RNIT NPEVR  KE R AG+LDN  EGEKY E
Sbjct: 2  ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKE 61

Query: 64 HGLRKFLRTRPPQIMPSINKFFSDP 89
          + LRKF+R + P+IMP +NKFF+DP
Sbjct: 62 NFLRKFVRNKKPEIMPGLNKFFTDP 86

[Close]

BLAST of Lsi08G016110 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-23
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 6  RWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNFEEGEKYAEHG 65
          RW++PEVYPL  A+G    +   QL RN   NP+ R+ KE R  G+L+N +EGEKYA+H 
Sbjct: 3  RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query: 66 LRKFLRTRPPQIMPSINKFFS 87
           RK+LRTR PQ+MPS+N+FFS
Sbjct: 63 FRKYLRTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of Lsi08G016110 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G016110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMX7	6.2e-42	95.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1	[more]
A0A6J1HDB5	6.2e-42	95.51	uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC1114625...	[more]
A0A1S4DVM4	1.4e-41	95.51	uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=...	[more]
A0A6J1BUB6	2.4e-41	95.51	uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6P4AFV5	1.4e-38	88.76	uncharacterized protein LOC107428374 OS=Ziziphus jujuba OX=326968 GN=LOC10742837...	[more]

BLAST of Lsi08G016110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885463.1	8.9e-43	97.75	uncharacterized protein LOC120075838 [Benincasa hispida]	[more]
XP_004142944.1	1.3e-41	95.51	uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical ...	[more]
XP_022961943.1	1.3e-41	95.51	uncharacterized protein LOC111462563 [Cucurbita moschata]	[more]
XP_016900034.1	2.9e-41	95.51	PREDICTED: uncharacterized protein LOC107990723 [Cucumis melo]	[more]
XP_023545968.1	2.9e-41	94.38	uncharacterized protein LOC111805233 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi08G016110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	3.7e-31	69.41	B12D protein	[more]
AT3G29970.1	2.9e-23	55.56	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 9..76 e-value: 1.0E-24 score: 86.1
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G016110.1	Lsi08G016110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane