Lsi08G015310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G015310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Small VCP/p97-interacting protein
Location	chr08: 23352416 .. 23353739 (-)
RNA-Seq Expression	Lsi08G015310
Synteny	Lsi08G015310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAAACTTATATATTTATACATTCTTATAAAAAGTTTTCAAATTTGCTATATTTAAAAAAGAAAAAAATCCAAAATTAAACCATCTTGGATTAACCAAGATGAGATAAGGACAATTCTGTAAACGGAAAAGCGGGTAATGAGATGGCGGTGTCAGATAACGTTGGGTGTTGTACACTCAATCCTAACCGTCCAATATAATTTTCGAATTACAAGAAAGTCAAAATTGATAGTGAAAATACCAATTGGGAGATCTTGGGAAAAACCTGCAACTGCAAGCAAAGCGATGGGGCAATGCGTAAGTTGTCTTGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGTTATTTCCTTTTCCCTCAACTTTAACTTTCTTTCTCAGTTTCTCTTCAGCTTCCTCGTCCTTTTTCAATTACAGCACCTTTTCACTTTAATTAGGGCTTTCCTTCATTGTTATGTTTTTTCAGTCAGTCTCGTTATTTTCTTTTTCCTTTTCTTTTTCTATGAACGTGAATTGTTCAGGTTTGGGATGTGACAGTTCCACAGGGGAATGGTTTTGACAAATAATCGTATCATAGCTTGTTTTATTAGGGTTTCGTTTTACTTTCCTGTTTGGAAATACTAGTTTGTTTACAGCTTCCTTATGAAACTATTTATTAAAATCTTGTTAAATTTCCAGAAACTATAAAAAGTACATTTCATAAACATATTAAAGCTGTTGAGATTTTTTTTTAAGAAATATGTAAAAAAGAATTTTAGATACTGCTAGAATCAAGCTTATTTTTTTAAAATAAAAAGTTGTCAAAATAGTTCAGGTTTGGAACCTCATGATTTAACTTCTTTTTTCTAGAAAATTCTTAGTGACCTAAAGAAAAAACAGGAAGCAAGCTAGAAAAAGAAGCTATGAGTGCTCTAATTTGAGATGACTGGATTGCACTTACCAATCTTTACCTGAAAAATGCCCTTTGGTATAAGTTAATTCACACCAAGGATGTAACGTCTATAGTTGGCTGCTCTTGATAATGTATTGAGCTATCTGTTTTAAATTGAAACGGTAATTTCAAATTAGGAACTATGATGGGAATATCCATGTGTTTTATACTGAAAGGGATATAAATATTTGCAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTGAAGGTCATTGAAATACCAGTTGTTTTTCTTGTTTCTTAA

mRNA sequence

TTGAAAACTTATATATTTATACATTCTTATAAAAAGTTTTCAAATTTGCTATATTTAAAAAAGAAAAAAATCCAAAATTAAACCATCTTGGATTAACCAAGATGAGATAAGGACAATTCTGTAAACGGAAAAGCGGGTAATGAGATGGCGGTGTCAGATAACGTTGGGTGTTGTACACTCAATCCTAACCGTCCAATATAATTTTCGAATTACAAGAAAGTCAAAATTGATAGTGAAAATACCAATTGGGAGATCTTGGGAAAAACCTGCAACTGCAAGCAAAGCGATGGGGCAATGCGTAAGTTGTCTTGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTGAAGGTCATTGAAATACCAGTTGTTTTTCTTGTTTCTTAA

Coding sequence (CDS)

ATGAGATGGCGGTGTCAGATAACGTTGGGTGTTGTACACTCAATCCTAACCGTCCAATATAATTTTCGAATTACAAGAAAGTCAAAATTGATAGTGAAAATACCAATTGGGAGATCTTGGGAAAAACCTGCAACTGCAAGCAAAGCGATGGGGCAATGCGTAAGTTGTCTTGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTGAAGGTCATTGAAATACCAGTTGTTTTTCTTGTTTCTTAA

Protein sequence

MRWRCQITLGVVHSILTVQYNFRITRKSKLIVKIPIGRSWEKPATASKAMGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSANTNKGEPVLKVIEIPVVFLVS

Homology

[Close]

BLAST of Lsi08G015310 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQCVSCLDEG+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. ExPASy TrEMBL
Match: A0A6J1HEN1 (uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC111462843 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-24
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1   MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSAN NKGEPVLK
Sbjct: 61  QSANANKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. ExPASy TrEMBL
Match: A0A6J1GGM5 (uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC111454028 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-24
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1   MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSAN NKGEPVLK
Sbjct: 61  QSANANKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 7.6e-30
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 31  IVKIPIGRSWEKPATASKAMGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEE 90
           +VKIPI     KPATASKAMGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEE
Sbjct: 1   MVKIPIRDFEGKPATASKAMGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEE 60

Query: 91  FEKSAAGRAARAQLAANAKQSANTNKGEPVLK 123
           FEKSAAGRAARAQ+AANAKQSAN NKGEPVLK
Sbjct: 61  FEKSAAGRAARAQMAANAKQSANANKGEPVLK 92

[Close]

BLAST of Lsi08G015310 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-26
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 6.6e-26
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQCVSCLDEG+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. NCBI nr
Match: KAG7029301.1 (hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. NCBI nr
Match: XP_022962383.1 (uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 uncharacterized protein LOC111492013 [Cucurbita maxima] >XP_023547040.1 uncharacterized protein LOC111805961 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 50  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 109
           MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 110 QSANTNKGEPVLK 123
           QSANTNKGEPVLK
Sbjct: 61  QSANTNKGEPVLK 73

[Close]

BLAST of Lsi08G015310 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-20
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 53  CVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSA 112
           C SC D  +K+QRKEEER AS EARAKAAEAAQRR+E+F+KSAAGRAA+AQL   AKQSA
Sbjct: 3   CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 113 NTNKGEPVLK 123
           NTNKGEPVLK
Sbjct: 63  NTNKGEPVLK 72

The following BLAST results are available for this feature:

BLAST of Lsi08G015310 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G015310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAJ0	3.2e-26	98.63	uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=...	[more]
A0A6J1K846	1.4e-24	93.15	uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013...	[more]
A0A6J1HEN1	1.4e-24	93.15	uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1KLT2	3.0e-24	93.15	uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424...	[more]
A0A6J1GGM5	3.0e-24	93.15	uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]

BLAST of Lsi08G015310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020610.1	7.6e-30	88.04	hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038886006.1	3.0e-26	100.00	uncharacterized protein LOC120076314 [Benincasa hispida]	[more]
XP_008444542.1	6.6e-26	98.63	PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo]	[more]
KAG7029301.1	2.8e-24	93.15	hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022962383.1	2.8e-24	93.15	uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 unchar...	[more]

BLAST of Lsi08G015310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63905.1	4.4e-20	78.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..84
None	No IPR available	PANTHER	PTHR36813:SF1	TRANSMEMBRANE PROTEIN	coord: 50..123
None	No IPR available	PANTHER	PTHR36813	TRANSMEMBRANE PROTEIN	coord: 50..123
IPR031632	Small VCP/p97-interacting protein	PFAM	PF15811	SVIP	coord: 50..122 e-value: 1.4E-11 score: 44.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G015310.1	Lsi08G015310.1	mRNA