Lsi08G015040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G015040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr08: 23158360 .. 23158635 (-)
RNA-Seq Expression	Lsi08G015040
Synteny	Lsi08G015040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTCTTCAAATCTCCTCCTGCAGGCGGCGGCGTGAAGCCGCGTGGTGTAATAATAATATTAATAGCGGTGGCTTTTGTGGCGTTGCTGCTACTTTCAACAGCTGAGACGAATAACATGAATGGAGAAGACAATAATATTAATATTGTCAAGTTAAACAAAGAAGCAAACCCATCTCACAAACTCCACCACCGTACGATGAGGCCATTCCATGTTTTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGACCCACTCCACAATCGTTAA

mRNA sequence

ATGCGGTTCTTCAAATCTCCTCCTGCAGGCGGCGGCGTGAAGCCGCGTGGTGTAATAATAATATTAATAGCGGTGGCTTTTGTGGCGTTGCTGCTACTTTCAACAGCTGAGACGAATAACATGAATGGAGAAGACAATAATATTAATATTGTCAAGTTAAACAAAGAAGCAAACCCATCTCACAAACTCCACCACCGTACGATGAGGCCATTCCATGTTTTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGACCCACTCCACAATCGTTAA

Coding sequence (CDS)

ATGCGGTTCTTCAAATCTCCTCCTGCAGGCGGCGGCGTGAAGCCGCGTGGTGTAATAATAATATTAATAGCGGTGGCTTTTGTGGCGTTGCTGCTACTTTCAACAGCTGAGACGAATAACATGAATGGAGAAGACAATAATATTAATATTGTCAAGTTAAACAAAGAAGCAAACCCATCTCACAAACTCCACCACCGTACGATGAGGCCATTCCATGTTTTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGACCCACTCCACAATCGTTAA

Protein sequence

MRFFKSPPAGGGVKPRGVIIILIAVAFVALLLLSTAETNNMNGEDNNINIVKLNKEANPSHKLHHRTMRPFHVLQSSKRKVPNASDPLHNR

Homology

[Close]

BLAST of Lsi08G015040 vs. ExPASy TrEMBL
Match: A0A5A7UYF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00650 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1  MRFF-KSPPAGGGVKPRGVII-ILIAVAFVALLLLSTAETNNMNGEDNNINIVKLNKEA- 60
          MRF  KSP AG GVKPRG+II IL AV F+ LLLL ++ +  +    +N+N+VKL KE  
Sbjct: 1  MRFLKKSPTAGAGVKPRGIIITILTAVTFLTLLLLISSSSPIL----HNVNVVKLKKEGA 60

Query: 61 ----NPSHKLHHRTMR-PFHVLQSSKRKVPNASDPLHNR 92
              + S KLHHR MR PF+VLQSSKRKVPNASDPLHNR
Sbjct: 61 RATPSSSQKLHHRRMRPPFYVLQSSKRKVPNASDPLHNR 95

[Close]

BLAST of Lsi08G015040 vs. ExPASy TrEMBL
Match: A0A0A0LL43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MRFF-KSPPAGGGVKPRGVII-ILIAVAFVALLLLSTAETNNMNGEDNNINIVKLNKE-- 60
          MRF  KSP AG GV PRG++I +L  V F+ LLLL ++         +N+N VKL KE  
Sbjct: 1  MRFLKKSPTAGAGVNPRGIVIALLTVVTFLTLLLLISSSP----PIPHNVNAVKLKKEGG 60

Query: 61 -ANP-SHKLHHRTM-RPFHVLQSSKRKVPNASDPLHNR 92
           A P S KLHHR M RP +VLQSSKRKVPNASDPLHNR
Sbjct: 61 RATPSSQKLHHRRMRRPSYVLQSSKRKVPNASDPLHNR 94

[Close]

BLAST of Lsi08G015040 vs. NCBI nr
Match: KAA0060932.1 (hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 8.6e-17
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1  MRFF-KSPPAGGGVKPRGVII-ILIAVAFVALLLLSTAETNNMNGEDNNINIVKLNKEA- 60
          MRF  KSP AG GVKPRG+II IL AV F+ LLLL ++ +  +    +N+N+VKL KE  
Sbjct: 1  MRFLKKSPTAGAGVKPRGIIITILTAVTFLTLLLLISSSSPIL----HNVNVVKLKKEGA 60

Query: 61 ----NPSHKLHHRTMR-PFHVLQSSKRKVPNASDPLHNR 92
              + S KLHHR MR PF+VLQSSKRKVPNASDPLHNR
Sbjct: 61 RATPSSSQKLHHRRMRPPFYVLQSSKRKVPNASDPLHNR 95

[Close]

BLAST of Lsi08G015040 vs. NCBI nr
Match: KGN62473.1 (hypothetical protein Csa_018580 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 8.9e-14
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MRFF-KSPPAGGGVKPRGVII-ILIAVAFVALLLLSTAETNNMNGEDNNINIVKLNKE-- 60
          MRF  KSP AG GV PRG++I +L  V F+ LLLL ++         +N+N VKL KE  
Sbjct: 1  MRFLKKSPTAGAGVNPRGIVIALLTVVTFLTLLLLISSSP----PIPHNVNAVKLKKEGG 60

Query: 61 -ANP-SHKLHHRTM-RPFHVLQSSKRKVPNASDPLHNR 92
           A P S KLHHR M RP +VLQSSKRKVPNASDPLHNR
Sbjct: 61 RATPSSQKLHHRRMRRPSYVLQSSKRKVPNASDPLHNR 94

The following BLAST results are available for this feature:

BLAST of Lsi08G015040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G015040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYF8	4.2e-17	61.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LL43	4.3e-14	59.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1	[more]

BLAST of Lsi08G015040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060932.1	8.6e-17	61.62	hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa]	[more]
KGN62473.1	8.9e-14	59.18	hypothetical protein Csa_018580 [Cucumis sativus]	[more]

BLAST of Lsi08G015040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G015040.1	Lsi08G015040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane