Lsi08G015020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G015020
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 23151515 .. 23151754 (+)
RNA-Seq ExpressionLsi08G015020
SyntenyLsi08G015020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGTGGTTGTTTTGGAGTTTTTGCTGTGATGATACTGTTGGCAATGGTGTTTGTTCATGTCGATTGCAGACCCCTCAGATCGAGAGTGGAAACTCCGCTCACGACGGGAACTGCACGAGTTGAGAAAGTAACCGCAGGTAACACGACTGGCTTTGTTACCTTTGGTGGTCATCGGAAGGGAAGGTGGGCATTCAAGCATGCTTCCGGACCGAGCATGAGAGGACCAGGACACTAG

mRNA sequence

ATGAAGCGTGGTTGTTTTGGAGTTTTTGCTGTGATGATACTGTTGGCAATGGTGTTTGTTCATGTCGATTGCAGACCCCTCAGATCGAGAGTGGAAACTCCGCTCACGACGGGAACTGCACGAGTTGAGAAAGTAACCGCAGGTAACACGACTGGCTTTGTTACCTTTGGTGGTCATCGGAAGGGAAGGTGGGCATTCAAGCATGCTTCCGGACCGAGCATGAGAGGACCAGGACACTAG

Coding sequence (CDS)

ATGAAGCGTGGTTGTTTTGGAGTTTTTGCTGTGATGATACTGTTGGCAATGGTGTTTGTTCATGTCGATTGCAGACCCCTCAGATCGAGAGTGGAAACTCCGCTCACGACGGGAACTGCACGAGTTGAGAAAGTAACCGCAGGTAACACGACTGGCTTTGTTACCTTTGGTGGTCATCGGAAGGGAAGGTGGGCATTCAAGCATGCTTCCGGACCGAGCATGAGAGGACCAGGACACTAG

Protein sequence

MKRGCFGVFAVMILLAMVFVHVDCRPLRSRVETPLTTGTARVEKVTAGNTTGFVTFGGHRKGRWAFKHASGPSMRGPGH
Homology
[Close]
BLAST of Lsi08G015020 vs. ExPASy TrEMBL
Match: A0A5A7V0S4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00630 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0 

Query: 1   MKRGCFGVFAVMILLAMVFVHVDCRPLRSRVETPLTTGTARVEKVTAGNTTGFVTFGGHR 60
           MK   FGVFAVMILLAMVFVHVDCR LRSRVET  T GT RVEKVT G+T+G V+F GHR
Sbjct: 51  MKPSFFGVFAVMILLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTSGLVSFNGHR 110

Query: 61  KGRWAFKHASGPSMRGPGH 80
           KG WAFKHASGPSMRGPGH
Sbjct: 111 KGSWAFKHASGPSMRGPGH 129

[Close]
BLAST of Lsi08G015020 vs. ExPASy TrEMBL
Match: A0A0A0LKP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G355010 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 63/79 (79.75%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 1  MKRGCFGVFAVMILLAMVFVHVDCRPLRSRVETPLTTGTARVEKVTAGNTTGFVTFGGHR 60
          MK   FGVFAVM LLAMVFVHVDCR LRSRVET  T GT RVEKVT G+T G V+F GHR
Sbjct: 1  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 60

Query: 61 KGRWAFKHASGPSMRGPGH 80
          KG WAFKHASGPSMRGPGH
Sbjct: 61 KGSWAFKHASGPSMRGPGH 79

[Close]
BLAST of Lsi08G015020 vs. NCBI nr
Match: KAA0060930.1 (hypothetical protein E6C27_scaffold501G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 8.8e-26
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0 

Query: 1   MKRGCFGVFAVMILLAMVFVHVDCRPLRSRVETPLTTGTARVEKVTAGNTTGFVTFGGHR 60
           MK   FGVFAVMILLAMVFVHVDCR LRSRVET  T GT RVEKVT G+T+G V+F GHR
Sbjct: 51  MKPSFFGVFAVMILLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTSGLVSFNGHR 110

Query: 61  KGRWAFKHASGPSMRGPGH 80
           KG WAFKHASGPSMRGPGH
Sbjct: 111 KGSWAFKHASGPSMRGPGH 129

[Close]
BLAST of Lsi08G015020 vs. NCBI nr
Match: KAE8652069.1 (hypothetical protein Csa_018550 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 63/79 (79.75%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 1   MKRGCFGVFAVMILLAMVFVHVDCRPLRSRVETPLTTGTARVEKVTAGNTTGFVTFGGHR 60
           MK   FGVFAVM LLAMVFVHVDCR LRSRVET  T GT RVEKVT G+T G V+F GHR
Sbjct: 43  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 102

Query: 61  KGRWAFKHASGPSMRGPGH 80
           KG WAFKHASGPSMRGPGH
Sbjct: 103 KGSWAFKHASGPSMRGPGH 121

[Close]
BLAST of Lsi08G015020 vs. NCBI nr
Match: KAG6585686.1 (hypothetical protein SDJN03_18419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 57/79 (72.15%), Postives = 58/79 (73.42%), Query Frame = 0 

Query: 1  MKRGCFGVFAVMILLAMVFVHVDCRPLRSRVETPLTTGTARVEKVTAGNTTGFVTFGGHR 60
          MKR C GV AVMILLAMVFVHVDCR L S  +T    GT R E V  GNTT FV FGG R
Sbjct: 1  MKRCCVGVLAVMILLAMVFVHVDCRVLTSMGDTRAVMGTGR-EHVGKGNTTEFVRFGGGR 60

Query: 61 KGRWAFKHASGPSMRGPGH 80
          KGRWAFKH SGPS RGPGH
Sbjct: 61 KGRWAFKHTSGPSKRGPGH 78

The following BLAST results are available for this feature:
BLAST of Lsi08G015020 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G015020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V0S44.3e-2681.01Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LKP92.8e-2579.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G355010 PE=4 SV=1[more]
BLAST of Lsi08G015020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060930.18.8e-2681.01hypothetical protein E6C27_scaffold501G00630 [Cucumis melo var. makuwa][more]
KAE8652069.15.7e-2579.75hypothetical protein Csa_018550 [Cucumis sativus][more]
KAG6585686.12.1e-1972.15hypothetical protein SDJN03_18419, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi08G015020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G015020.1Lsi08G015020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane