Lsi08G015010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G015010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein GID2-like
Location	chr08: 23145324 .. 23145731 (-)
RNA-Seq Expression	Lsi08G015010
Synteny	Lsi08G015010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAAATCAAGAAAATTAAATCAGATTCAGAGGAACAAGAAGCAAAATCACGTTTTGCAAATTTAGACGACAATCTGTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCCCACGATGAGCGCCTCTGGGAGCTACTCTGCACCAAACACTGGACCAACGTCGGCTGTGCTAATCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTACACTCTCTTTACCCATTTTCCCCTATGATTGGATGTAATCCATGGGGCAAAGACGAGGTTCATCTCTCACTTTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAATTCAAGAACAGACCCACATCTTGA

mRNA sequence

ATGAAGAAGAAAATCAAGAAAATTAAATCAGATTCAGAGGAACAAGAAGCAAAATCACGTTTTGCAAATTTAGACGACAATCTGTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCCCACGATGAGCGCCTCTGGGAGCTACTCTGCACCAAACACTGGACCAACGTCGGCTGTGCTAATCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTACACTCTCTTTACCCATTTTCCCCTATGATTGGATGTAATCCATGGGGCAAAGACGAGGTTCATCTCTCACTTTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAATTCAAGAACAGACCCACATCTTGA

Coding sequence (CDS)

ATGAAGAAGAAAATCAAGAAAATTAAATCAGATTCAGAGGAACAAGAAGCAAAATCACGTTTTGCAAATTTAGACGACAATCTGTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCCCACGATGAGCGCCTCTGGGAGCTACTCTGCACCAAACACTGGACCAACGTCGGCTGTGCTAATCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTACACTCTCTTTACCCATTTTCCCCTATGATTGGATGTAATCCATGGGGCAAAGACGAGGTTCATCTCTCACTTTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAATTCAAGAACAGACCCACATCTTGA

Protein sequence

MKKKIKKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

Homology

[Close]

BLAST of Lsi08G015010 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-41
Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 6   KKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLC 65
           KK+KS  EE+     F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+C
Sbjct: 20  KKMKSTEEEEIG---FSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELIC 79

Query: 66  TKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIR 125
           T+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   NP   +GKDE+ L+LSLLSIR
Sbjct: 80  TRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSLLSIR 139

Query: 126 YYEKMKFKNRP 134
           YYEKM F  RP
Sbjct: 140 YYEKMSFTKRP 146

[Close]

BLAST of Lsi08G015010 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 11  DSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWT 70
           D+ E E + R  +L ++L+FEV +  +ARTLA AA VS+ W + A DERLWE  C + W 
Sbjct: 64  DAGEGE-QPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWA 123

Query: 71  NVGCANQQLRSVVLALGGFRRLHSLY--PFSPMIGCNP-----------WGKDEVHLSLS 128
           N+G + +QLR+VVL+LGGFRRLH++Y  P        P            G+D+V LSLS
Sbjct: 124 NLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQLSLS 183

[Close]

BLAST of Lsi08G015010 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 27  NLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLAL 86
           ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSAL 92

Query: 87  GGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIRYYEKM 128
           GG+R L+ L    P++   P   W +D++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Lsi08G015010 vs. ExPASy TrEMBL
Match: A0A5A7V5E1 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00620 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.7e-63
Identity = 124/143 (86.71%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFK 60
           M  KIKK KSDS +QE         S FANLDDNLLFEVFKHVDARTLATAAGV+KQWFK
Sbjct: 1   MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFK 60

Query: 61  TAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN-PWGKDEV 120
           TAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLHSLYPF PMIGCN PWGKDEV
Sbjct: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120

Query: 121 HLSLSLLSIRYYEKMKFKNRPTS 136
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 HLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Lsi08G015010 vs. ExPASy TrEMBL
Match: A0A1S3BDV6 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.7e-63
Identity = 124/143 (86.71%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFK 60
           M  KIKK KSDS +QE         S FANLDDNLLFEVFKHVDARTLATAAGV+KQWFK
Sbjct: 1   MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFK 60

Query: 61  TAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN-PWGKDEV 120
           TAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLHSLYPF PMIGCN PWGKDEV
Sbjct: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120

Query: 121 HLSLSLLSIRYYEKMKFKNRPTS 136
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 HLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Lsi08G015010 vs. ExPASy TrEMBL
Match: A0A0A0LR75 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 122/142 (85.92%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MKKKIKKIKSDSEEQE------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKT 60
           M  +IKK KS S +QE        S FANLDDNLLFEVFKHVDARTLAT AGVSKQWFKT
Sbjct: 1   MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT 60

Query: 61  AHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN-PWGKDEVH 120
           AHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLHSLYPF PMIGCN PWGKDEVH
Sbjct: 61  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH 120

Query: 121 LSLSLLSIRYYEKMKFKNRPTS 136
           LSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLSLLSIRYYEKMKFKNRPTS 142

[Close]

BLAST of Lsi08G015010 vs. ExPASy TrEMBL
Match: A0A6J1HCI1 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.2e-58
Identity = 116/138 (84.06%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 5   IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERL 64
           +KKIKS SEEQ+    + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE L
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWL 60

Query: 65  WELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIG---CNPWGKDEVHLSLS 124
           WELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF P++G   C PWGKDE+HLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLS 120

Query: 125 LLSIRYYEKMKFKNRPTS 136
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lsi08G015010 vs. ExPASy TrEMBL
Match: A0A6J1K7I7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 113/138 (81.88%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 5   IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERL 64
           +KKIKS S+EQ+    + S FANLDDNLLFEVFKHVDARTLATA+GVSKQW+KTAHDE L
Sbjct: 1   MKKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWL 60

Query: 65  WELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIG---CNPWGKDEVHLSLS 124
           WELLCTKHW N+GCAN QLRSVVLALGGFRRLHSLYPF P+IG   C  WGK EVHLSLS
Sbjct: 61  WELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLS 120

Query: 125 LLSIRYYEKMKFKNRPTS 136
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lsi08G015010 vs. NCBI nr
Match: XP_008445558.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 124/143 (86.71%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFK 60
           M  KIKK KSDS +QE         S FANLDDNLLFEVFKHVDARTLATAAGV+KQWFK
Sbjct: 1   MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFK 60

Query: 61  TAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN-PWGKDEV 120
           TAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLHSLYPF PMIGCN PWGKDEV
Sbjct: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120

Query: 121 HLSLSLLSIRYYEKMKFKNRPTS 136
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 HLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Lsi08G015010 vs. NCBI nr
Match: XP_004143017.1 (F-box protein GID2 [Cucumis sativus] >KGN62476.1 hypothetical protein Csa_018769 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 122/142 (85.92%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MKKKIKKIKSDSEEQE------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKT 60
           M  +IKK KS S +QE        S FANLDDNLLFEVFKHVDARTLAT AGVSKQWFKT
Sbjct: 1   MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT 60

Query: 61  AHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN-PWGKDEVH 120
           AHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLHSLYPF PMIGCN PWGKDEVH
Sbjct: 61  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH 120

Query: 121 LSLSLLSIRYYEKMKFKNRPTS 136
           LSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLSLLSIRYYEKMKFKNRPTS 142

[Close]

BLAST of Lsi08G015010 vs. NCBI nr
Match: KAG6598351.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 7.9e-59
Identity = 117/138 (84.78%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 5   IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERL 64
           +KKIKS SEEQ+    + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE L
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60

Query: 65  WELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIG---CNPWGKDEVHLSLS 124
           WELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF P+IG   C PWGKDE+HLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120

Query: 125 LLSIRYYEKMKFKNRPTS 136
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lsi08G015010 vs. NCBI nr
Match: XP_023522812.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.9 bits (603), Expect = 1.0e-58
Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 0


Query: 5   IKKIKSDSEEQE-----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDER 64
           +KKIKS S+EQ+     + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE 
Sbjct: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60

Query: 65  LWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIG---CNPWGKDEVHLSL 124
           LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF P+IG   C PWGKDEVHLSL
Sbjct: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120

Query: 125 SLLSIRYYEKMKFKNRPTS 136
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 139

[Close]

BLAST of Lsi08G015010 vs. NCBI nr
Match: XP_022962352.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 234.2 bits (596), Expect = 6.7e-58
Identity = 116/138 (84.06%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 5   IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERL 64
           +KKIKS SEEQ+    + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE L
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWL 60

Query: 65  WELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIG---CNPWGKDEVHLSLS 124
           WELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF P++G   C PWGKDE+HLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLS 120

Query: 125 LLSIRYYEKMKFKNRPTS 136
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lsi08G015010 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-42
Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 6   KKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLC 65
           KK+KS  EE+     F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+C
Sbjct: 20  KKMKSTEEEEIG---FSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELIC 79

Query: 66  TKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIR 125
           T+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   NP   +GKDE+ L+LSLLSIR
Sbjct: 80  TRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSLLSIR 139

Query: 126 YYEKMKFKNRP 134
           YYEKM F  RP
Sbjct: 140 YYEKMSFTKRP 146

[Close]

BLAST of Lsi08G015010 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-11
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 27  NLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLAL 86
           ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSAL 92

Query: 87  GGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIRYYEKM 128
           GG+R L+ L    P++   P   W +D++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

The following BLAST results are available for this feature:

BLAST of Lsi08G015010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	2.6e-41	65.65	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.4e-21	44.62	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	1.9e-10	35.58	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Lsi08G015010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5E1	5.7e-63	86.71	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BDV6	5.7e-63	86.71	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1	[more]
A0A0A0LR75	1.4e-61	85.92	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 ...	[more]
A0A6J1HCI1	3.2e-58	84.06	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1	[more]
A0A6J1K7I7	2.3e-56	81.88	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1	[more]

BLAST of Lsi08G015010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445558.1	1.2e-62	86.71	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GI...	[more]
XP_004143017.1	2.9e-61	85.92	F-box protein GID2 [Cucumis sativus] >KGN62476.1 hypothetical protein Csa_018769...	[more]
KAG6598351.1	7.9e-59	84.78	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322....	[more]
XP_023522812.1	1.0e-58	84.17	F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box prote...	[more]
XP_022962352.1	6.7e-58	84.06	F-box protein GID2-like [Cucurbita moschata]	[more]

BLAST of Lsi08G015010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	1.9e-42	65.65	F-box family protein	[more]
AT5G48170.1	1.3e-11	35.58	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 24..64 e-value: 0.0031 score: 26.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 26..66 e-value: 2.4E-6 score: 27.3
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 18..64 score: 9.25902
None	No IPR available	GENE3D	1.20.1280.50		coord: 3..107 e-value: 1.1E-12 score: 49.7
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 102..130
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 2..95
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 2..95 coord: 102..130
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 7..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G015010.1	Lsi08G015010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding