Lsi08G014930 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G014930
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMannose-P-dolichol utilization defect 1 protein
Locationchr08: 23099443 .. 23100543 (+)
RNA-Seq ExpressionLsi08G014930
SyntenyLsi08G014930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGAACAGATTTTGAGCTATGTAAAGGGGGGTTCATAATTCCATTCAAAATAGTACAGTAATTAATAAGCAATAGTACAGTAATTAATAAGCATCTGATACCTAATTAGGCTGTAATTTAAAATTTTGTAGTCGGTAGCTAAGAATCGCAACTTGTTCCAAGTCTAATTAGGTGCTAAGTCAATCTCTTGAACTTATACCAATCACCGTAGAAGAACCCTTCCTTTGAATTCAAATTATTTATTTTGTTCTCTTCCAGTTCAACGTTTCCGCCTGAATAATTCTTACTATTTCTTTTATTTGCATCCTACGTTGAGAGGATTTGATCACTGTTCAATCTTCGTCATGGGTGCTTTACTTCAAGTCATCATTGTAATGCAAAATTTATTCCTGCAGATAATGAAGATCTTGAAACATCAGAGTGTCAGAGGACTTAGTGTTATATCCTTTGAGCTAGAAGTCGTAGGTTACACCATTGCTCTGGCTTATTGTGTCCACAAAGGGCTTCCATTTTCAGCTTATGGGGAACTGGCATTTCTCTTGGTTCAAGGTATATTAAGAAATTCTAGAAAATTGCTGCCACCGAGACATTTTCTGAAGAAAAAAAAATCCCCTCATAAAATGCGTTACTGATAAAAATTGGAACATCAAATGGTCAAAATGGGAAAAAGTAGACTATATTTGATGATTAGATGCTATTATTCTTAAATTAATTTAAGGTTGGGAGTTGAGTGGGTTGCTGATGAGGACAATGAATTATAGAATACTACTTGTAATGTCAGTATATCGATGTCATCTTACGTCCTGTACATGGTTATATAACTATGGTACGTTGTTAGATAAAAATAAAAACATAGTTGTATTTTAGGTGGACACGTCACACCCTTGTGTACGAGCATACAGTAAACTTTTTCTTGGAATCTACACTTTCACAATTGATACGACCTTGACCTACTACACTATCTCAATCAAGACATGGCATAAGGCATTCAGATGATAGTTATTTTTCTTATTTTAAATTGCTTTTGATTAAGGTTGGTTGACAGTTTTCGTCCTGGCCATTGACCTATCGTTAACTCAGAAGTCAGGACCCTAG

mRNA sequence

ATGATTATAATGAAGATCTTGAAACATCAGAGTGTCAGAGGACTTAGTGTTATATCCTTTGAGCTAGAAGTCGTAGGTTACACCATTGCTCTGGCTTATTGTGTCCACAAAGGGCTTCCATTTTCAGCTTATGGGGAACTGGCATTTCTCTTGGTTCAAGGTATATTAAGAAATTCTAGAAAATTGCTGCCACCGAGACATTTTCTGAAGAAAAAAAAATCCCCTCATAAAATGCGTTGGTTGACAGTTTTCGTCCTGGCCATTGACCTATCGTTAACTCAGAAGTCAGGACCCTAG

Coding sequence (CDS)

ATGATTATAATGAAGATCTTGAAACATCAGAGTGTCAGAGGACTTAGTGTTATATCCTTTGAGCTAGAAGTCGTAGGTTACACCATTGCTCTGGCTTATTGTGTCCACAAAGGGCTTCCATTTTCAGCTTATGGGGAACTGGCATTTCTCTTGGTTCAAGGTATATTAAGAAATTCTAGAAAATTGCTGCCACCGAGACATTTTCTGAAGAAAAAAAAATCCCCTCATAAAATGCGTTGGTTGACAGTTTTCGTCCTGGCCATTGACCTATCGTTAACTCAGAAGTCAGGACCCTAG

Protein sequence

MIIMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGILRNSRKLLPPRHFLKKKKSPHKMRWLTVFVLAIDLSLTQKSGP
Homology
[Close]
BLAST of Lsi08G014930 vs. ExPASy Swiss-Prot
Match: Q8VY63 (Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At4g07390 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-18
Identity = 41/54 (75.93%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKI++H+SVRGLSV++FELEVVGYTI+LAYC+HKGLPFSA+GE+AFLL+Q ++
Sbjct: 50  IMKIVQHKSVRGLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALI 103

[Close]
BLAST of Lsi08G014930 vs. ExPASy Swiss-Prot
Match: Q9LTI3 (Mannose-P-dolichol utilization defect 1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g59470 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-15
Identity = 37/54 (68.52%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKI+ ++SV+GLSV++FELEV+GYTI+LAYC++K LPFSA+GELAFLL+Q ++
Sbjct: 50  IMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALI 103

[Close]
BLAST of Lsi08G014930 vs. ExPASy TrEMBL
Match: A0A5A7UYE6 (Cystinosin/ERS1p repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00550 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-25
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGILRNSRKL 62
           IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGILR +RKL
Sbjct: 83  IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGILRTTRKL 142

Query: 63  LPPRHF 69
           LP +HF
Sbjct: 143 LPRKHF 148

[Close]
BLAST of Lsi08G014930 vs. ExPASy TrEMBL
Match: E5GB83 (Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 50  IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 103

[Close]
BLAST of Lsi08G014930 vs. ExPASy TrEMBL
Match: A0A0A0LL56 (Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucumis sativus OX=3659 GN=Csa_2G356080 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 50  IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 103

[Close]
BLAST of Lsi08G014930 vs. ExPASy TrEMBL
Match: A0A1S3BBF5 (Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucumis melo OX=3656 GN=LOC103487866 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 50  IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 103

[Close]
BLAST of Lsi08G014930 vs. ExPASy TrEMBL
Match: A0A6J1KK36 (Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111495988 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.2e-19
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSV+SFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 50  IMKILKHQSVRGLSVLSFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 103

[Close]
BLAST of Lsi08G014930 vs. NCBI nr
Match: KAA0060922.1 (Cystinosin/ERS1p repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-25
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGILRNSRKL 62
           IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGILR +RKL
Sbjct: 83  IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGILRTTRKL 142

Query: 63  LPPRHF 69
           LP +HF
Sbjct: 143 LPRKHF 148

[Close]
BLAST of Lsi08G014930 vs. NCBI nr
Match: XP_004142876.1 (mannose-P-dolichol utilization defect 1 protein homolog 2 [Cucumis sativus] >XP_008444595.1 PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Cucumis melo] >ADN33725.1 mannose-P-dolichol utilization defect 1 protein [Cucumis melo subsp. melo] >KGN62483.1 hypothetical protein Csa_018783 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 7.6e-19
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 50  IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 103

[Close]
BLAST of Lsi08G014930 vs. NCBI nr
Match: XP_038886542.1 (mannose-P-dolichol utilization defect 1 protein homolog 2 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 7.6e-19
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 50  IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 103

[Close]
BLAST of Lsi08G014930 vs. NCBI nr
Match: KAG7020593.1 (Mannose-P-dolichol utilization defect 1 protein-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSV+SFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 124 IMKILKHQSVRGLSVLSFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 177

[Close]
BLAST of Lsi08G014930 vs. NCBI nr
Match: XP_023001966.1 (mannose-P-dolichol utilization defect 1 protein homolog 2 [Cucurbita maxima] >XP_023538232.1 mannose-P-dolichol utilization defect 1 protein homolog 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKILKHQSVRGLSV+SFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQ I+
Sbjct: 50  IMKILKHQSVRGLSVLSFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQAII 103

[Close]
BLAST of Lsi08G014930 vs. TAIR 10
Match: AT4G07390.1 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-19
Identity = 41/54 (75.93%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKI++H+SVRGLSV++FELEVVGYTI+LAYC+HKGLPFSA+GE+AFLL+Q ++
Sbjct: 50  IMKIVQHKSVRGLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALI 103

[Close]
BLAST of Lsi08G014930 vs. TAIR 10
Match: AT5G59470.1 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 37/54 (68.52%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKI+ ++SV+GLSV++FELEV+GYTI+LAYC++K LPFSA+GELAFLL+Q ++
Sbjct: 50  IMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALI 103

[Close]
BLAST of Lsi08G014930 vs. TAIR 10
Match: AT5G59470.2 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 37/54 (68.52%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 3   IMKILKHQSVRGLSVISFELEVVGYTIALAYCVHKGLPFSAYGELAFLLVQGIL 57
           IMKI+ ++SV+GLSV++FELEV+GYTI+LAYC++K LPFSA+GELAFLL+Q ++
Sbjct: 50  IMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALI 103

The following BLAST results are available for this feature:
BLAST of Lsi08G014930 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VY633.0e-1875.93Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thalian... [more]
Q9LTI32.4e-1568.52Mannose-P-dolichol utilization defect 1 protein homolog 1 OS=Arabidopsis thalian... [more]
BLAST of Lsi08G014930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UYE63.4e-2593.94Cystinosin/ERS1p repeat-containing protein OS=Cucumis melo var. makuwa OX=119469... [more]
E5GB833.7e-1996.30Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucumis melo subsp. m... [more]
A0A0A0LL563.7e-1996.30Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucumis sativus OX=36... [more]
A0A1S3BBF53.7e-1996.30Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucumis melo OX=3656 ... [more]
A0A6J1KK366.2e-1994.44Mannose-P-dolichol utilization defect 1 protein homolog OS=Cucurbita maxima OX=3... [more]
BLAST of Lsi08G014930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060922.17.1e-2593.94Cystinosin/ERS1p repeat-containing protein [Cucumis melo var. makuwa][more]
XP_004142876.17.6e-1996.30mannose-P-dolichol utilization defect 1 protein homolog 2 [Cucumis sativus] >XP_... [more]
XP_038886542.17.6e-1996.30mannose-P-dolichol utilization defect 1 protein homolog 2 [Benincasa hispida][more]
KAG7020593.11.3e-1894.44Mannose-P-dolichol utilization defect 1 protein-like 2, partial [Cucurbita argyr... [more]
XP_023001966.11.3e-1894.44mannose-P-dolichol utilization defect 1 protein homolog 2 [Cucurbita maxima] >XP... [more]
BLAST of Lsi08G014930 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G07390.12.1e-1975.93Mannose-P-dolichol utilization defect 1 protein [more]
AT5G59470.11.7e-1668.52Mannose-P-dolichol utilization defect 1 protein [more]
AT5G59470.21.7e-1668.52Mannose-P-dolichol utilization defect 1 protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.290coord: 1..57
e-value: 4.4E-5
score: 25.6
NoneNo IPR availablePANTHERPTHR12226:SF4MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1coord: 3..56
IPR006603PQ-loop repeatPFAMPF04193PQ-loopcoord: 3..42
e-value: 9.3E-7
score: 28.5
IPR016817Mannose-P-dolichol utilization defect 1 proteinPANTHERPTHR12226MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATEDcoord: 3..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G014930.1Lsi08G014930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane