Lsi08G014440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G014440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor MYB44-like
Location	chr08: 22613943 .. 22614632 (-)
RNA-Seq Expression	Lsi08G014440
Synteny	Lsi08G014440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGAACCTCCTCTTCTTCCTCCTCCTCCGACTCTACGTCATCGGATTCTTCTTTCTCTGGCAAAGGATCGCGGCGCCCGGAGAAGATTAAAGAGCCGTGGAGTGCGGAGGAGGATCGGATTTTAACCCAGCTTGTGGCCCGTTATGGAGCGAGAAATTGGTCGTTGATTAGCCGTTACATTAAGGGCCGGTCTGGGAAATCGTGTCGGCTCAGATGGTGTAACCAGTTGAGTCCGAATGTTGAGCACCGGCCGTTTTCTCCGACGGAGGATGAGACGATTTTGGCTGCTCATGCCAGGTTTGGGAACCGGTGGGCCACCATTGCCCGGTTGCTTCCCGGTCGGACCGACAATGCCGTTAAGAATCACTGGAACTCGACGCTAAAACGACGGGCGAGGGAACAACAGCAACAATTAGTAATGGACGGAATTACCCCCGAAAGTCAGGGTAATAATGCTGTGAACATTGCTAGTGATTTGAAGCTTTCCGTACCTCTGGAGGACGATCCGTTGACCGCGTTGACTCTGGCGCCGCCGGGAATCGGCGGCGGTAGAACCACGGCGGCGGAGGAACGGCGGGTTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGATAGCGAGGGAGGTGAGGGAATACATGACGACGACGTTTATGGAAAATCCGGAGTTTCACTAA

mRNA sequence

ATGATGAGAACCTCCTCTTCTTCCTCCTCCTCCGACTCTACGTCATCGGATTCTTCTTTCTCTGGCAAAGGATCGCGGCGCCCGGAGAAGATTAAAGAGCCGTGGAGTGCGGAGGAGGATCGGATTTTAACCCAGCTTGTGGCCCGTTATGGAGCGAGAAATTGGTCGTTGATTAGCCGTTACATTAAGGGCCGGTCTGGGAAATCGTGTCGGCTCAGATGGTGTAACCAGTTGAGTCCGAATGTTGAGCACCGGCCGTTTTCTCCGACGGAGGATGAGACGATTTTGGCTGCTCATGCCAGGTTTGGGAACCGGTGGGCCACCATTGCCCGGTTGCTTCCCGGTCGGACCGACAATGCCGTTAAGAATCACTGGAACTCGACGCTAAAACGACGGGCGAGGGAACAACAGCAACAATTAGTAATGGACGGAATTACCCCCGAAAGTCAGGGTAATAATGCTGTGAACATTGCTAGTGATTTGAAGCTTTCCGTACCTCTGGAGGACGATCCGTTGACCGCGTTGACTCTGGCGCCGCCGGGAATCGGCGGCGGTAGAACCACGGCGGCGGAGGAACGGCGGGTTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGATAGCGAGGGAGGTGAGGGAATACATGACGACGACGTTTATGGAAAATCCGGAGTTTCACTAA

Coding sequence (CDS)

ATGATGAGAACCTCCTCTTCTTCCTCCTCCTCCGACTCTACGTCATCGGATTCTTCTTTCTCTGGCAAAGGATCGCGGCGCCCGGAGAAGATTAAAGAGCCGTGGAGTGCGGAGGAGGATCGGATTTTAACCCAGCTTGTGGCCCGTTATGGAGCGAGAAATTGGTCGTTGATTAGCCGTTACATTAAGGGCCGGTCTGGGAAATCGTGTCGGCTCAGATGGTGTAACCAGTTGAGTCCGAATGTTGAGCACCGGCCGTTTTCTCCGACGGAGGATGAGACGATTTTGGCTGCTCATGCCAGGTTTGGGAACCGGTGGGCCACCATTGCCCGGTTGCTTCCCGGTCGGACCGACAATGCCGTTAAGAATCACTGGAACTCGACGCTAAAACGACGGGCGAGGGAACAACAGCAACAATTAGTAATGGACGGAATTACCCCCGAAAGTCAGGGTAATAATGCTGTGAACATTGCTAGTGATTTGAAGCTTTCCGTACCTCTGGAGGACGATCCGTTGACCGCGTTGACTCTGGCGCCGCCGGGAATCGGCGGCGGTAGAACCACGGCGGCGGAGGAACGGCGGGTTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGATAGCGAGGGAGGTGAGGGAATACATGACGACGACGTTTATGGAAAATCCGGAGTTTCACTAA

Protein sequence

MMRTSSSSSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAREQQQQLVMDGITPESQGNNAVNIASDLKLSVPLEDDPLTALTLAPPGIGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH

Homology

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BLAST of Lsi08G014440 vs. ExPASy Swiss-Prot
Match: O23160 (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-42
Identity = 81/116 (69.83%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 29  EKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 88
           E+IK PWS EED +L +LV ++G RNWSLIS+ I GRSGKSCRLRWCNQLSP VEHR FS
Sbjct: 10  ERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFS 69

Query: 89  PTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAREQQQQLVMDG 145
             EDETI+ AHARFGN+WATI+RLL GRTDNA+KNHWNSTLKR+   + Q     G
Sbjct: 70  QEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGG 125

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BLAST of Lsi08G014440 vs. ExPASy Swiss-Prot
Match: Q9FDW1 (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-42
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 29  EKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 88
           ++IK PWS EED  L +LV +YG RNW++IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 89  PTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 133
             EDETI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Lsi08G014440 vs. ExPASy Swiss-Prot
Match: Q9SN12 (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-42
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 29  EKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 88
           +++K PWS EED  L ++V +YG RNWS IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 89  PTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 133
           P EDETI+ A A+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

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BLAST of Lsi08G014440 vs. ExPASy Swiss-Prot
Match: Q42575 (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-38
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 21  SGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSP 80
           SG+G R  +++K PWS EED +L++LV R GARNWS I+R I GRSGKSCRLRWCNQL+P
Sbjct: 46  SGRGRR--DRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNP 105

Query: 81  NVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 133
           N+    F+  ED+ I+AAHA  GN+WA IA+LLPGRTDNA+KNHWNS L+RR
Sbjct: 106 NLIRNSFTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

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BLAST of Lsi08G014440 vs. ExPASy Swiss-Prot
Match: O04192 (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-34
Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 11  SDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSC 70
           ++   SD++  GK      K+K PW  E+D  LT+LV   G RNW+LISR I GRSGKSC
Sbjct: 34  AELAKSDANGGGK-----SKVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSC 93

Query: 71  RLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLK 130
           RLRWCNQL P ++ +PFS  E+  I++A A  GN+W+ IA+LLPGRTDNA+KNHWNS L+
Sbjct: 94  RLRWCNQLDPILKRKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLR 153

Query: 131 RRAREQ 137
           R+  EQ
Sbjct: 154 RKPAEQ 154

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BLAST of Lsi08G014440 vs. ExPASy TrEMBL
Match: A0A1S3BAB9 (transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103487918 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.5e-111
Identity = 219/238 (92.02%), Postives = 221/238 (92.86%), Query Frame = 0


Query: 1   MMRTSSS-SSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLIS 60
           MMR+SSS SSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLV RYGARNWSLIS
Sbjct: 1   MMRSSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLIS 60

Query: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120
           RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN
Sbjct: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120

Query: 121 AVKNHWNSTLKRRARE-QQQQLVMDGITPESQG-----NNAVNIASDLKL--SVPLEDDP 180
           AVKNHWNSTLKRRARE QQQQLVMDGITPE  G     NNAVNIASDLKL  SVPLEDDP
Sbjct: 121 AVKNHWNSTLKRRAREQQQQQLVMDGITPECHGSNNNNNNAVNIASDLKLSVSVPLEDDP 180

Query: 181 LTALTLAPPGIGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230
           LTALTLAPPGIGG RTTA +ER VESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH
Sbjct: 181 LTALTLAPPGIGGVRTTAVDERLVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 238

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BLAST of Lsi08G014440 vs. ExPASy TrEMBL
Match: A0A0A0LKY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360620 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.5e-111
Identity = 220/241 (91.29%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MMRTSSS-SSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLIS 60
           MMR+SSS SSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLV RYGARNWSLIS
Sbjct: 1   MMRSSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLIS 60

Query: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120
           RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN
Sbjct: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120

Query: 121 AVKNHWNSTLKRRAREQQ--QQLVMDGITPESQG------NNAVNIASDLKL----SVPL 180
           AVKNHWNSTLKRRAREQQ  QQLVMDGITPE  G      NN VNIASDLKL    SVPL
Sbjct: 121 AVKNHWNSTLKRRAREQQHHQQLVMDGITPECHGISNNNNNNVVNIASDLKLSVSVSVPL 180

Query: 181 EDDPLTALTLAPPGIGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE 229
           EDDPLTALTLAPPGIGG RTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE
Sbjct: 181 EDDPLTALTLAPPGIGGVRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE 240

[Close]

BLAST of Lsi08G014440 vs. ExPASy TrEMBL
Match: A0A5A7SVX1 (Transcription factor MYB44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48285G00010 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.6e-111
Identity = 220/239 (92.05%), Postives = 222/239 (92.89%), Query Frame = 0


Query: 1   MMRTSSS-SSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLIS 60
           MMR+SSS SSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLV RYGARNWSLIS
Sbjct: 1   MMRSSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLIS 60

Query: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120
           RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN
Sbjct: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120

Query: 121 AVKNHWNSTLKRRARE-QQQQLVMDGITPESQG-----NNAVNIASDLKL--SVPLEDDP 180
           AVKNHWNSTLKRRARE QQQQLVMDGITPE  G     NNAVNIASDLKL  SVPLEDDP
Sbjct: 121 AVKNHWNSTLKRRAREQQQQQLVMDGITPECHGSNNNNNNAVNIASDLKLSVSVPLEDDP 180

Query: 181 LTALTLAPPGIGGGRTTA-AEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230
           LTALTLAPPGIGG RTTA  +ERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH
Sbjct: 181 LTALTLAPPGIGGVRTTAVVDERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 239

[Close]

BLAST of Lsi08G014440 vs. ExPASy TrEMBL
Match: A0A6J1CRX2 (transcription factor MYB1-like OS=Momordica charantia OX=3673 GN=LOC111014010 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.7e-107
Identity = 204/232 (87.93%), Postives = 214/232 (92.24%), Query Frame = 0


Query: 1   MMRTSSSSSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISR 60
           +MR+SSSSSSSDSTSSDSSFSGK SRRPEKIK PWSAEEDRILTQLV RYG RNWSLISR
Sbjct: 4   LMRSSSSSSSSDSTSSDSSFSGKASRRPEKIKGPWSAEEDRILTQLVGRYGPRNWSLISR 63

Query: 61  YIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNA 120
           YIKGRSGKSCRLRWCNQLSP+VEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNA
Sbjct: 64  YIKGRSGKSCRLRWCNQLSPSVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNA 123

Query: 121 VKNHWNSTLKRRAREQQQQLVMDGITPESQGNNAVNIASDLKLSVP-LEDDPLTALTLAP 180
           VKNHWNSTLKRRARE+QQQLVMDGI PE+ G N+VN+ SDLKLSVP LEDDPLTALTLAP
Sbjct: 124 VKNHWNSTLKRRARERQQQLVMDGIAPENHG-NSVNLPSDLKLSVPDLEDDPLTALTLAP 183

Query: 181 PGIGGG--RTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230
           PGIGG   R  A ++RR+ES P GFWDAMRDVIAREVREYMTTTFMENPE H
Sbjct: 184 PGIGGADPRAAAVDDRRIESLPVGFWDAMRDVIAREVREYMTTTFMENPELH 234

[Close]

BLAST of Lsi08G014440 vs. ExPASy TrEMBL
Match: A0A6J1GI94 (transcription factor MYB44-like OS=Cucurbita moschata OX=3662 GN=LOC111454401 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.8e-101
Identity = 195/228 (85.53%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 2   MRTSSSSSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISRY 61
           M TSSSSSSS STSSDSSFSG  SRRPEKIK PWSAEEDRIL QLV RYG RNWSLISRY
Sbjct: 1   MTTSSSSSSSSSTSSDSSFSGNPSRRPEKIKGPWSAEEDRILIQLVDRYGPRNWSLISRY 60

Query: 62  IKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAV 121
           IKGRSGKSCRLRWCNQLSPNVEHRPFS TEDETILAAHARFGNRWATIARLLPGRTDNAV
Sbjct: 61  IKGRSGKSCRLRWCNQLSPNVEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAV 120

Query: 122 KNHWNSTLKRRAREQQQQLVMDGITPESQGNNAVNIASDLKLSVPLEDDPLTALTLAPPG 181
           KNHWNSTLKRRAR QQ  L +DGITP++  N   +  SDLKLSVPLEDDPLTALTLAPPG
Sbjct: 121 KNHWNSTLKRRARHQQHHLAIDGITPDNHANAVTD--SDLKLSVPLEDDPLTALTLAPPG 180

Query: 182 IGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230
           I GG    AEERR+ESFPAGFWDAMRDV+AREVREYMTTTF+EN EFH
Sbjct: 181 ISGG--VVAEERRIESFPAGFWDAMRDVVAREVREYMTTTFLENQEFH 224

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BLAST of Lsi08G014440 vs. NCBI nr
Match: XP_038885826.1 (transcription factor MYB25-like [Benincasa hispida])

HSP 1 Score: 425.6 bits (1093), Expect = 2.7e-115
Identity = 217/230 (94.35%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 2   MRTSSSSSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISRY 61
           MRTSSSSSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLVARYG RNWSLISRY
Sbjct: 1   MRTSSSSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVARYGPRNWSLISRY 60

Query: 62  IKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAV 121
           IKGRSGKSCRLRWCNQLSPNVEHRPFSP EDETILAAHARFGNRWATIARLLPGRTDNAV
Sbjct: 61  IKGRSGKSCRLRWCNQLSPNVEHRPFSPMEDETILAAHARFGNRWATIARLLPGRTDNAV 120

Query: 122 KNHWNSTLKRRAREQQQQLVMDGITPESQG--NNAVNIASDLKLSVPLEDDPLTALTLAP 181
           KNHWNSTLKRRAREQQQQLVMD I PE+ G  NNAVNIASDLKLSVPLE+DPLTALTLAP
Sbjct: 121 KNHWNSTLKRRAREQQQQLVMDEIAPENHGNNNNAVNIASDLKLSVPLEEDPLTALTLAP 180

Query: 182 PGIGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230
           PGIGGGRTT AEERRVE+FPAGFWDAMRDVIAREVREYMTTTFMENPEFH
Sbjct: 181 PGIGGGRTTTAEERRVENFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230

[Close]

BLAST of Lsi08G014440 vs. NCBI nr
Match: XP_008444647.1 (PREDICTED: transcription factor MYB44-like [Cucumis melo])

HSP 1 Score: 412.1 bits (1058), Expect = 3.0e-111
Identity = 219/238 (92.02%), Postives = 221/238 (92.86%), Query Frame = 0


Query: 1   MMRTSSS-SSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLIS 60
           MMR+SSS SSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLV RYGARNWSLIS
Sbjct: 1   MMRSSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLIS 60

Query: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120
           RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN
Sbjct: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120

Query: 121 AVKNHWNSTLKRRARE-QQQQLVMDGITPESQG-----NNAVNIASDLKL--SVPLEDDP 180
           AVKNHWNSTLKRRARE QQQQLVMDGITPE  G     NNAVNIASDLKL  SVPLEDDP
Sbjct: 121 AVKNHWNSTLKRRAREQQQQQLVMDGITPECHGSNNNNNNAVNIASDLKLSVSVPLEDDP 180

Query: 181 LTALTLAPPGIGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230
           LTALTLAPPGIGG RTTA +ER VESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH
Sbjct: 181 LTALTLAPPGIGGVRTTAVDERLVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 238

[Close]

BLAST of Lsi08G014440 vs. NCBI nr
Match: XP_004152727.1 (transcription factor MYB44 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 5.2e-111
Identity = 220/241 (91.29%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MMRTSSS-SSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLIS 60
           MMR+SSS SSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLV RYGARNWSLIS
Sbjct: 1   MMRSSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLIS 60

Query: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120
           RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN
Sbjct: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120

Query: 121 AVKNHWNSTLKRRAREQQ--QQLVMDGITPESQG------NNAVNIASDLKL----SVPL 180
           AVKNHWNSTLKRRAREQQ  QQLVMDGITPE  G      NN VNIASDLKL    SVPL
Sbjct: 121 AVKNHWNSTLKRRAREQQHHQQLVMDGITPECHGISNNNNNNVVNIASDLKLSVSVSVPL 180

Query: 181 EDDPLTALTLAPPGIGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE 229
           EDDPLTALTLAPPGIGG RTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE
Sbjct: 181 EDDPLTALTLAPPGIGGVRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE 240

[Close]

BLAST of Lsi08G014440 vs. NCBI nr
Match: KAE8652097.1 (hypothetical protein Csa_022277 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 5.2e-111
Identity = 220/241 (91.29%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MMRTSSS-SSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLIS 60
           MMR+SSS SSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLV RYGARNWSLIS
Sbjct: 56  MMRSSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLIS 115

Query: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120
           RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN
Sbjct: 116 RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 175

Query: 121 AVKNHWNSTLKRRAREQQ--QQLVMDGITPESQG------NNAVNIASDLKL----SVPL 180
           AVKNHWNSTLKRRAREQQ  QQLVMDGITPE  G      NN VNIASDLKL    SVPL
Sbjct: 176 AVKNHWNSTLKRRAREQQHHQQLVMDGITPECHGISNNNNNNVVNIASDLKLSVSVSVPL 235

Query: 181 EDDPLTALTLAPPGIGGGRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE 229
           EDDPLTALTLAPPGIGG RTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE
Sbjct: 236 EDDPLTALTLAPPGIGGVRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPE 295

[Close]

BLAST of Lsi08G014440 vs. NCBI nr
Match: KAA0033571.1 (transcription factor MYB44-like [Cucumis melo var. makuwa])

HSP 1 Score: 410.2 bits (1053), Expect = 1.2e-110
Identity = 220/239 (92.05%), Postives = 222/239 (92.89%), Query Frame = 0


Query: 1   MMRTSSS-SSSSDSTSSDSSFSGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLIS 60
           MMR+SSS SSSSDSTSSDSSFSGKG RRPEKIK PWSAEEDRILTQLV RYGARNWSLIS
Sbjct: 1   MMRSSSSNSSSSDSTSSDSSFSGKGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLIS 60

Query: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120
           RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN
Sbjct: 61  RYIKGRSGKSCRLRWCNQLSPNVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDN 120

Query: 121 AVKNHWNSTLKRRARE-QQQQLVMDGITPESQG-----NNAVNIASDLKL--SVPLEDDP 180
           AVKNHWNSTLKRRARE QQQQLVMDGITPE  G     NNAVNIASDLKL  SVPLEDDP
Sbjct: 121 AVKNHWNSTLKRRAREQQQQQLVMDGITPECHGSNNNNNNAVNIASDLKLSVSVPLEDDP 180

Query: 181 LTALTLAPPGIGGGRTTA-AEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 230
           LTALTLAPPGIGG RTTA  +ERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH
Sbjct: 181 LTALTLAPPGIGGVRTTAVVDERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFH 239

[Close]

BLAST of Lsi08G014440 vs. TAIR 10
Match: AT4G37260.1 (myb domain protein 73 )

HSP 1 Score: 174.9 bits (442), Expect = 7.6e-44
Identity = 81/116 (69.83%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 29  EKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 88
           E+IK PWS EED +L +LV ++G RNWSLIS+ I GRSGKSCRLRWCNQLSP VEHR FS
Sbjct: 10  ERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFS 69

Query: 89  PTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAREQQQQLVMDG 145
             EDETI+ AHARFGN+WATI+RLL GRTDNA+KNHWNSTLKR+   + Q     G
Sbjct: 70  QEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGG 125

[Close]

BLAST of Lsi08G014440 vs. TAIR 10
Match: AT3G50060.1 (myb domain protein 77 )

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-43
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 29  EKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 88
           +++K PWS EED  L ++V +YG RNWS IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 89  PTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 133
           P EDETI+ A A+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Lsi08G014440 vs. TAIR 10
Match: AT5G67300.1 (myb domain protein r1 )

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-43
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 29  EKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 88
           ++IK PWS EED  L +LV +YG RNW++IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 89  PTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 133
             EDETI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Lsi08G014440 vs. TAIR 10
Match: AT2G23290.1 (myb domain protein 70 )

HSP 1 Score: 172.2 bits (435), Expect = 4.9e-43
Identity = 79/112 (70.54%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 21  SGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSP 80
           SG   +  ++IK PWS EED +L  LV ++G RNWSLIS+ I GRSGKSCRLRWCNQLSP
Sbjct: 2   SGSTRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 61

Query: 81  NVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 133
            VEHR F+  ED+TI+ AHARFGN+WATIARLL GRTDNA+KNHWNSTLKR+
Sbjct: 62  EVEHRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113

[Close]

BLAST of Lsi08G014440 vs. TAIR 10
Match: AT3G09230.1 (myb domain protein 1 )

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-39
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 21  SGKGSRRPEKIKEPWSAEEDRILTQLVARYGARNWSLISRYIKGRSGKSCRLRWCNQLSP 80
           SG+G R  +++K PWS EED +L++LV R GARNWS I+R I GRSGKSCRLRWCNQL+P
Sbjct: 46  SGRGRR--DRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNP 105

Query: 81  NVEHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 133
           N+    F+  ED+ I+AAHA  GN+WA IA+LLPGRTDNA+KNHWNS L+RR
Sbjct: 106 NLIRNSFTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

The following BLAST results are available for this feature:

BLAST of Lsi08G014440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23160	1.1e-42	69.83	Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1	[more]
Q9FDW1	2.4e-42	75.96	Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1	[more]
Q9SN12	2.4e-42	75.00	Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1	[more]
Q42575	2.7e-38	65.18	Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1	[more]
O04192	6.9e-34	55.56	Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1	[more]

BLAST of Lsi08G014440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAB9	1.5e-111	92.02	transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103487918 PE=4 SV=...	[more]
A0A0A0LKY3	2.5e-111	91.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360620 PE=4 SV=1	[more]
A0A5A7SVX1	5.6e-111	92.05	Transcription factor MYB44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A6J1CRX2	3.7e-107	87.93	transcription factor MYB1-like OS=Momordica charantia OX=3673 GN=LOC111014010 PE...	[more]
A0A6J1GI94	1.8e-101	85.53	transcription factor MYB44-like OS=Cucurbita moschata OX=3662 GN=LOC111454401 PE...	[more]

BLAST of Lsi08G014440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885826.1	2.7e-115	94.35	transcription factor MYB25-like [Benincasa hispida]	[more]
XP_008444647.1	3.0e-111	92.02	PREDICTED: transcription factor MYB44-like [Cucumis melo]	[more]
XP_004152727.1	5.2e-111	91.29	transcription factor MYB44 [Cucumis sativus]	[more]
KAE8652097.1	5.2e-111	91.29	hypothetical protein Csa_022277 [Cucumis sativus]	[more]
KAA0033571.1	1.2e-110	92.05	transcription factor MYB44-like [Cucumis melo var. makuwa]	[more]

BLAST of Lsi08G014440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37260.1	7.6e-44	69.83	myb domain protein 73	[more]
AT3G50060.1	1.7e-43	75.00	myb domain protein 77	[more]
AT5G67300.1	1.7e-43	75.96	myb domain protein r1	[more]
AT2G23290.1	4.9e-43	70.54	myb domain protein 70	[more]
AT3G09230.1	1.9e-39	65.18	myb domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 83..131 e-value: 1.9E-14 score: 64.0 coord: 31..80 e-value: 5.0E-16 score: 69.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 27..78 score: 11.76477
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 79..129 score: 9.34939
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 86..129 e-value: 4.23835E-11 score: 54.5038
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 34..76 e-value: 4.26492E-15 score: 64.9042
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 35..93 e-value: 1.5E-17 score: 63.6
None	No IPR available	GENE3D	1.10.10.60		coord: 85..152 e-value: 5.1E-21 score: 76.5
None	No IPR available	GENE3D	1.10.10.60		coord: 31..83 e-value: 3.1E-21 score: 77.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45614:SF53	TRANSCRIPTION FACTOR MYB44-LIKE	coord: 2..214
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 2..214
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 84..133 score: 22.51465
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 27..82 score: 26.714142
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 29..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G014440.1	Lsi08G014440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding