Lsi08G013990 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G013990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger and BTB domain-containing protein 47
Location	chr08: 22269600 .. 22269944 (+)
RNA-Seq Expression	Lsi08G013990
Synteny	Lsi08G013990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGAAGAAAACCCAGAAAACTAAGGAGATTGCTGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATTGGCCAATCGATACAGCCCAGGAAAAGGGGCCGACCTCGTAAGGTTCTCGATGAACCACAGAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCACTGCCGGAAGCTGCAGAGAATCCACCGGAAAAGAAAGCTAAAATCACCGTGGATGAACCGCCGCCGGGTTCCATGGAAGAAGCTTCAAAACAAGAACCCAAATCAGGGGATGGTTCGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAA

mRNA sequence

ATGGGTAAGAAGAAAACCCAGAAAACTAAGGAGATTGCTGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATTGGCCAATCGATACAGCCCAGGAAAAGGGGCCGACCTCGTAAGGTTCTCGATGAACCACAGAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCACTGCCGGAAGCTGCAGAGAATCCACCGGAAAAGAAAGCTAAAATCACCGTGGATGAACCGCCGCCGGGTTCCATGGAAGAAGCTTCAAAACAAGAACCCAAATCAGGGGATGGTTCGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAA

Coding sequence (CDS)

ATGGGTAAGAAGAAAACCCAGAAAACTAAGGAGATTGCTGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATTGGCCAATCGATACAGCCCAGGAAAAGGGGCCGACCTCGTAAGGTTCTCGATGAACCACAGAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCACTGCCGGAAGCTGCAGAGAATCCACCGGAAAAGAAAGCTAAAATCACCGTGGATGAACCGCCGCCGGGTTCCATGGAAGAAGCTTCAAAACAAGAACCCAAATCAGGGGATGGTTCGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAA

Protein sequence

MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEPQNEQENKKLPPPPLPEAAENPPEKKAKITVDEPPPGSMEEASKQEPKSGDGSRSRGRRKNKPRKSS

Homology

[Close]

BLAST of Lsi08G013990 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42
Identity = 105/117 (89.74%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEPQNEQENKKLPPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDE QNEQENKKLPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  P--LPEAAENPPEKKAKITVDEPPPGSMEEASKQ-EPKSGDGSRSRGRRKNKPRKSS 115
           P  LPE  ENPPEKK K TVDEPPPGS++E SKQ EPK+GDGSRSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

[Close]

BLAST of Lsi08G013990 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34
Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDG-IGQSIQPRKRGRPRKVLDEPQNEQENKKLPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDG IGQ IQPRKRGRPRKVL+E QNEQE+KK PP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK-PP 60

Query: 61  PPLPEAAENPPEKKAKITVDEPPPGSMEEASK-QEPKSGDGSRSRGRRKNKPRKSS 115
           PPL E AENPPEKK K TVDE   GSM E SK +EPK+GDGSRSRGRRKNKPRKSS
Sbjct: 61  PPLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of Lsi08G013990 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 88/122 (72.13%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADD----GIGQSIQPRKRGRPRKVLDEPQNEQENKK 60
           MGKKKTQKTK+I+VAIAETSTSKL DD    G GQS QPRKRGRPRKVLDEP    ++KK
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEP---PDDKK 92

Query: 61  LPPPPLPEAAENPPEKKAKITVDEPPPGSMEEASKQ----EPKSGDGSRSRGRRKNKPRK 115
           L PPP  + A+ P +KK K T DEPP  SME ASKQ    EPKSGDGSRSRGRRKNKPRK
Sbjct: 93  LLPPPAADVADKPLQKKGKTTGDEPPI-SMEGASKQQESEEPKSGDGSRSRGRRKNKPRK 150

[Close]

BLAST of Lsi08G013990 vs. ExPASy TrEMBL
Match: A0A151TC30 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_019184 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-05
Identity = 58/124 (46.77%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEPQNEQENKKLPPP 60
           MGKKK QKTKE+ VAIAE S SK  D    Q   PRKRGRPRKV+   + E E KK+ P 
Sbjct: 1   MGKKKRQKTKELWVAIAEAS-SKGGDTEQPQPQPPRKRGRPRKVV-VVETESEAKKVEPQ 60

Query: 61  PLPEAAENPPEKKAKITVDEPPPGSMEEASKQEPK----------SGDGSRSRGRRKNKP 115
           P+ E     PE     T  E   G  +E    E K           G+ SRSR RRK+KP
Sbjct: 61  PIEEP---QPEASTTATKKEEEHGKHQEELTSESKEGVFQEIQLPKGEPSRSRARRKSKP 119

[Close]

BLAST of Lsi08G013990 vs. ExPASy TrEMBL
Match: A0A251R9L0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQS----IQPRKRGRPRKVLDEPQNEQENKK 60
           MGKKK QKTKE++VAIAE  ++   D+G  QS      PRKRGRPRK++++ ++ +E   
Sbjct: 1   MGKKKPQKTKELSVAIAEAPST--GDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEEQST 60

Query: 61  LPPPPLPEAAENPPE--KKAKITVDE--------PPPGSMEE---------ASKQEPKSG 115
                   AAE+  E  KKAK T DE          P   EE         A K+E ++ 
Sbjct: 61  PQTEEAAAAAEDVEEQSKKAKATEDEDQQEEEQQEQPKIKEEPSSASVRGGAKKEEGQAR 120

[Close]

BLAST of Lsi08G013990 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 105/117 (89.74%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEPQNEQENKKLPPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDE QNEQENKKLPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  P--LPEAAENPPEKKAKITVDEPPPGSMEEASKQ-EPKSGDGSRSRGRRKNKPRKSS 115
           P  LPE  ENPPEKK K TVDEPPPGS++E SKQ EPK+GDGSRSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

[Close]

BLAST of Lsi08G013990 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 177.6 bits (449), Expect = 6.3e-41
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEPQNEQENKKLPPP 60
           MGKKK QKTKEIAVAIAETS SKLADDGIGQSIQPRKRGRPRKVLDEPQN+QENKKL  P
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADDGIGQSIQPRKRGRPRKVLDEPQNKQENKKL-LP 60

Query: 61  PLPEAAENPPEKKAKITVDEPPPGSMEEASKQ-EPKSGDGSRSRGRRKNKPRKSS 115
           PLPE AENPPEKKAK TVD+PPPGSMEE SKQ EPK+GDGSRSRGRRKNKPRKSS
Sbjct: 61  PLPEVAENPPEKKAKTTVDQPPPGSMEEGSKQGEPKTGDGSRSRGRRKNKPRKSS 114

[Close]

BLAST of Lsi08G013990 vs. NCBI nr
Match: KGN62596.1 (hypothetical protein Csa_022088 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 7.4e-34
Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDG-IGQSIQPRKRGRPRKVLDEPQNEQENKKLPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDG IGQ IQPRKRGRPRKVL+E QNEQE+KK PP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK-PP 60

Query: 61  PPLPEAAENPPEKKAKITVDEPPPGSMEEASK-QEPKSGDGSRSRGRRKNKPRKSS 115
           PPL E AENPPEKK K TVDE   GSM E SK +EPK+GDGSRSRGRRKNKPRKSS
Sbjct: 61  PPLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of Lsi08G013990 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 6.7e-27
Identity = 89/122 (72.95%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADD----GIGQSIQPRKRGRPRKVLDEPQNEQENKK 60
           MGKKKTQKTK+I+VAIAETSTSKL DD    G GQS+QPRKRGRPRKVLDEP    ++KK
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEP---PDDKK 60

Query: 61  LPPPPLPEAAENPPEKKAKITVDEPPPGSMEEASKQ----EPKSGDGSRSRGRRKNKPRK 115
           LPPPP  + A+ P +KK K T DE PP SME ASKQ    EPKSGDGSRSRGRRKNKPRK
Sbjct: 61  LPPPP-ADVADKPLQKKGKSTGDE-PPDSMEGASKQHESEEPKSGDGSRSRGRRKNKPRK 117

[Close]

BLAST of Lsi08G013990 vs. NCBI nr
Match: XP_023002541.1 (uncharacterized protein LOC111496353 [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-26
Identity = 88/122 (72.13%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADD----GIGQSIQPRKRGRPRKVLDEPQNEQENKK 60
           MGKKKTQKTK+I+VAIAETSTSKL DD    G GQS QPRKRGRPRKVLDEP    ++KK
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEP---PDDKK 92

Query: 61  LPPPPLPEAAENPPEKKAKITVDEPPPGSMEEASKQ----EPKSGDGSRSRGRRKNKPRK 115
           L PPP  + A+ P +KK K T DEPP  SME ASKQ    EPKSGDGSRSRGRRKNKPRK
Sbjct: 93  LLPPPAADVADKPLQKKGKTTGDEPPI-SMEGASKQQESEEPKSGDGSRSRGRRKNKPRK 150

The following BLAST results are available for this feature:

BLAST of Lsi08G013990 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G013990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIE6	6.1e-42	89.74	Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LRH2	3.6e-34	84.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1	[more]
A0A6J1KLK8	1.6e-26	72.13	uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353...	[more]
A0A151TC30	3.5e-05	46.77	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_019184 PE=4 SV=1	[more]
A0A251R9L0	1.0e-04	43.07	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1	[more]

BLAST of Lsi08G013990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065239.1	1.3e-41	89.74	zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa]	[more]
XP_038884964.1	6.3e-41	90.43	uncharacterized protein LOC120075548 [Benincasa hispida]	[more]
KGN62596.1	7.4e-34	84.48	hypothetical protein Csa_022088 [Cucumis sativus]	[more]
KAG7020516.1	6.7e-27	72.95	hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023002541.1	3.3e-26	72.13	uncharacterized protein LOC111496353 [Cucurbita maxima]	[more]

BLAST of Lsi08G013990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	PANTHER	PTHR37615	NUCLEOPORIN NUP159-LIKE	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G013990.1	Lsi08G013990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane