Lsi08G013490 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G013490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr08: 21786552 .. 21786782 (+)
RNA-Seq Expression	Lsi08G013490
Synteny	Lsi08G013490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGAAGGGATGAATTAACGTGGACGACGTTGATTACTTGGTATGGGCAGAAGGATGATCTGAATGAGGCACGTGGCCTTGTAGACACAATGACTGAAAAGCTGAGTGTAGCATGGAATGCCATGATCTCTGGATATGTGCACCGTGGTATTTTCGAGGATGCCTCGAACACTCTTTATGGAAATGCGTTTGATTGGAGTCCACCACTACGAGTTCACCTACACTAG

mRNA sequence

ATGGCAGGAAGGGATGAATTAACGTGGACGACGTTGATTACTTGGTATGGGCAGAAGGATGATCTGAATGAGGCACGTGGCCTTGTAGACACAATGACTGAAAAGCTGAGTGTAGCATGGAATGCCATGATCTCTGGATATGTGCACCGTGGTATTTTCGAGGATGCCTCGAACACTCTTTATGGAAATGCGTTTGATTGGAGTCCACCACTACGAGTTCACCTACACTAG

Coding sequence (CDS)

ATGGCAGGAAGGGATGAATTAACGTGGACGACGTTGATTACTTGGTATGGGCAGAAGGATGATCTGAATGAGGCACGTGGCCTTGTAGACACAATGACTGAAAAGCTGAGTGTAGCATGGAATGCCATGATCTCTGGATATGTGCACCGTGGTATTTTCGAGGATGCCTCGAACACTCTTTATGGAAATGCGTTTGATTGGAGTCCACCACTACGAGTTCACCTACACTAG

Protein sequence

MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTLYGNAFDWSPPLRVHLH

Homology

[Close]

BLAST of Lsi08G013490 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 6.8e-10
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M+ R  +TWTT++T YGQ + +++AR + D M EK  V+W +M+ GYV  G  EDA
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253

[Close]

BLAST of Lsi08G013490 vs. ExPASy Swiss-Prot
Match: Q9M4P3 (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DYW10 PE=2 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-08
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASN 59
           M  +D  +W T+IT Y ++ ++ +AR L  +M EK  V+WNAMISGY+  G  E AS+
Sbjct: 150 MPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASH 207

[Close]

BLAST of Lsi08G013490 vs. ExPASy Swiss-Prot
Match: Q9M9R6 (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M   D ++WT +IT + +  DL  AR   D M EK  V+WNAM+SGY   G  EDA
Sbjct: 193 MPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDA 248

[Close]

BLAST of Lsi08G013490 vs. ExPASy Swiss-Prot
Match: Q9FXB9 (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-07
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  R+ +TWTT+IT Y Q + ++ AR L + M EK  V+W +M+ GY   G  EDA
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253

[Close]

BLAST of Lsi08G013490 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-07
Identity = 24/68 (35.29%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTL 60
           M  RD  +W T+++ Y Q   +++AR + D M EK  V+WNA++S YV     E+A   L
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC-ML 211

Query: 61  YGNAFDWS 69
           + +  +W+
Sbjct: 212 FKSRENWA 218

[Close]

BLAST of Lsi08G013490 vs. ExPASy TrEMBL
Match: A0A6J1KSZ4 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima OX=3661 GN=LOC111496149 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

[Close]

BLAST of Lsi08G013490 vs. ExPASy TrEMBL
Match: A0A6J1GGL5 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata OX=3662 GN=LOC111454019 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

[Close]

BLAST of Lsi08G013490 vs. ExPASy TrEMBL
Match: A0A6J1CRF6 (pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charantia OX=3673 GN=LOC111014069 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTT+IT Y + DDLN A GL+DTMTEKL VAWN+MISGYVH G+F++A
Sbjct: 218 MPERDELTWTTMITGYVRNDDLNGAHGLLDTMTEKLGVAWNSMISGYVHHGLFQEA 273

[Close]

BLAST of Lsi08G013490 vs. ExPASy TrEMBL
Match: A0A2I4ENP7 (pentatricopeptide repeat-containing protein At1g25360 OS=Juglans regia OX=51240 GN=LOC108991303 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.7e-14
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTT+IT Y + DDL  ARG++D MTEKL VAWNAMISGYVHRG  ++A
Sbjct: 218 MPERDELTWTTIITGYVRNDDLATARGILDGMTEKLEVAWNAMISGYVHRGFIQEA 273

[Close]

BLAST of Lsi08G013490 vs. ExPASy TrEMBL
Match: A0A7J7DLB9 (Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G01336 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDEL+WTT+IT Y + DDL+ AR L+D MTEKL VAWNAMISGY+H G+++DA
Sbjct: 219 MPVRDELSWTTVITGYVRNDDLDTARELLDGMTEKLGVAWNAMISGYIHHGLYQDA 274

[Close]

BLAST of Lsi08G013490 vs. NCBI nr
Match: KAG7020472.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

[Close]

BLAST of Lsi08G013490 vs. NCBI nr
Match: XP_023537093.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

[Close]

BLAST of Lsi08G013490 vs. NCBI nr
Match: KAG6585558.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

[Close]

BLAST of Lsi08G013490 vs. NCBI nr
Match: XP_023002238.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

[Close]

BLAST of Lsi08G013490 vs. NCBI nr
Match: XP_022951057.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

[Close]

BLAST of Lsi08G013490 vs. TAIR 10
Match: AT1G09410.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-11
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M+ R  +TWTT++T YGQ + +++AR + D M EK  V+W +M+ GYV  G  EDA
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253

[Close]

BLAST of Lsi08G013490 vs. TAIR 10
Match: AT4G16835.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASN 59
           M  +D  +W T+IT Y ++ ++ +AR L  +M EK  V+WNAMISGY+  G  E AS+
Sbjct: 150 MPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASH 207

[Close]

BLAST of Lsi08G013490 vs. TAIR 10
Match: AT1G14470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-09
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M   D ++WT +IT + +  DL  AR   D M EK  V+WNAM+SGY   G  EDA
Sbjct: 193 MPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDA 248

[Close]

BLAST of Lsi08G013490 vs. TAIR 10
Match: AT1G56690.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-08
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA 57
           M  R+ +TWTT+IT Y Q + ++ AR L + M EK  V+W +M+ GY   G  EDA
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253

[Close]

BLAST of Lsi08G013490 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-08
Identity = 24/68 (35.29%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 1   MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTL 60
           M  RD  +W T+++ Y Q   +++AR + D M EK  V+WNA++S YV     E+A   L
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC-ML 211

Query: 61  YGNAFDWS 69
           + +  +W+
Sbjct: 212 FKSRENWA 218

The following BLAST results are available for this feature:

BLAST of Lsi08G013490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XI1	6.8e-10	46.43	Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop...	[more]
Q9M4P3	2.8e-08	44.83	Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidop...	[more]
Q9M9R6	4.8e-08	46.43	Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX...	[more]
Q9FXB9	4.1e-07	44.64	Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop...	[more]
Q9SY02	7.0e-07	35.29	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lsi08G013490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSZ4	2.3e-16	78.57	pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima O...	[more]
A0A6J1GGL5	2.3e-16	78.57	pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata...	[more]
A0A6J1CRF6	2.5e-15	71.43	pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charanti...	[more]
A0A2I4ENP7	4.7e-14	69.64	pentatricopeptide repeat-containing protein At1g25360 OS=Juglans regia OX=51240 ...	[more]
A0A7J7DLB9	2.3e-13	66.07	Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 ...	[more]

BLAST of Lsi08G013490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020472.1	4.6e-16	78.57	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023537093.1	4.6e-16	78.57	pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp...	[more]
KAG6585558.1	4.6e-16	78.57	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023002238.1	4.6e-16	78.57	pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima]	[more]
XP_022951057.1	4.6e-16	78.57	pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata]	[more]

BLAST of Lsi08G013490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09410.1	4.8e-11	46.43	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G16835.1	2.0e-09	44.83	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G14470.1	3.4e-09	46.43	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G56690.1	2.9e-08	44.64	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G02750.1	5.0e-08	35.29	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..62 e-value: 4.9E-10 score: 41.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 38..57 e-value: 0.0023 score: 18.1 coord: 8..35 e-value: 1.3E-4 score: 21.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 8..34 e-value: 5.6E-4 score: 17.9 coord: 38..56 e-value: 0.0022 score: 16.1
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 1..59
None	No IPR available	PANTHER	PTHR47929:SF13	BNACNNG04730D PROTEIN	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G013490.1	Lsi08G013490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding