Lsi08G013040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G013040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA ligase 1-like isoform X2
Location	chr08: 21406421 .. 21408794 (+)
RNA-Seq Expression	Lsi08G013040
Synteny	Lsi08G013040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCAATTAGGTTTTCCAATTTGCTGCCTCATCGAGAAGTTCTTTCGTTCTCTGCTAGGGTTTTCATCGCAATCGCGTATCGTCTTCTTTTTTTCGCAAATCCCAACTTCTTCTCTCTTTTTTCTTTCAAATCTTTGCCGAATCCTTCCCATAATAGACACAGATGTCTCGTTGCTTTCCTTACCCACCTCCTGGTTACGTGAGGAAGGTGGCTAGCACCGAGGCGGCCTTGATCGAATCGATTAAGGTTTGTTTCAGCTATTTGGTTGGTTTTCATAATGTATGCTGGATTCAATTATGTTCTGATTCCAATTGATTGCGAGATCTCTTGGGATTGTAACTTTTTGGATGGGGTATATCTGTAATCAGGAACGGCTTTTCTTGTAATTTTTTCGACGACGGGGGAGACAATGGATGTGGGTTTTCTTGTTTCGTTTGGTTTCGAGAGTTGCAAGTTTTGTACCCTAATTATAGGAATATTGATTTTGGATTTTTTGGACTGTAGTTTCTAGGTTTAGTTTGGTTCTTCTGTGTAATATATCTCTTGAAGGAACGAGAGATCTTCGAGAGTTTTGAGTGTGTAGATAGTGGGTTAGGGTTCTGCTAGTTGCATGTTGTACTCTTCGTTCTTGGATCTTGTATGGATATGTACCGCCTTTGAAATCAAAACATCAGAACACTTTAATAAACGTTTTAAACTTTTAATTTTTCATAGATCATTTAATCATCGTGTAAACTTCATGGTTTTTTAAATGCTTTTAAAACCCAGTTCCTTTTCTTTCAAATGGATTGTTTTCTACAAGTTTTAAATGCAAGAGATTTAGGGTTTTCCGCAAGTTGATTATTATAAACGCTTTTAGATGAAATTTTTGTAGAACCACTTTTCCCTTGATATCTTTAGGCATATTAATACATGATATGAATGTATGAGTTTGCTAGTTTGCTAGTTACATCAGATGGAAATTCTCCTTTACAATAGGAAAGCTACCCTTTTTTAAGGGCTGCATTATATTAGTTAGGGAATGGTTGATCTGTTTGGTGCTTGTGTCGTCTGCTCTTTTTGAACTGGTTATTCTGGTGCGTTATAGCTCCAATCTGAAAGACGACAGAGCAAGAATGATAGAAAGAAAGAGAAAAGTAAGGACAAGAAAGAGAAGAGCAAGGACAAGAAAGAGAGAAGTAAGGACAAGAAACACAAAAGCAAAGAACGTAAAGAAAAATCCTCCCACAGCCATGACTTGAAAGATCGGAAACAAAAGGAATGCTTAAACGAAGCCAAGGACCTTCAAAAGGGTACCAAAGTTGAAGCAGAACAATTAGAAAGGAGTGCTCTCACTGAAGAGCATGGACAACCTCATAGCCCTGCCTACTTGTCTGACGGAACTCAGATCAGCCACAAGAGAAAAAGGGATGCTGCATTACAGCCTAATGAAGGTTGTAAGCCTGGTGGGTTTATATTTGTAGATAATAGGCTCTTTTATAAGTTATATTGGCCACTTGAACAAACGCTAATATATTATTGATCATAAACAGGCAAAATCATCCGGATCAAACTGGGTTCTTCACTAAGCCAGCAAGAGGATTCATCGGCTGGCAGCGAACAGACGTGTTCTACGTCTGGTCGTGATAATTCTGTTGATCAAAAGAGAGATGAGAACAGCCATGGATCTATTCAGCAAAATACTTTCTTCACCAATGCTGAAACAGCTGTTGCTGTCAAGGATCCCACTTCGTCCAAACCAATGATCAAAGACCCTCCTTTGCATCCTGTGAAGGACATTAGTTCTAAGGGTAATGCTGTGTCGTTACCCCGTCGCACCAGAAGTCCTGCTGAATCTGCTTATGAGGCCTTGTTTGAGAAGTGGGTAGCACCACCTCTTCAATTGGAGCAACAAACAGATGATGAAGAATGGCTCTTTGGAAGAACAAGAAAACAAGATGGACAAAGTACCATGACCAACAAAGCTTTCAGTTCTGTTCCGAGCTGTGGTAGAAGTTCAAGTTTGTGGCCGAGAGGACAACATCTTGCAGATGCTGATGTTTATTCATTACCTTATACGATCCCATTTTGATTTTGAATTCTTTCCTTTGCTGAGTAATATGTACAGTACGCCGGTAGGAATGATAGTCTTCCTTTGGCGTTATAATTGTTTTAGAATCAATATAATTGACATTCAATTTTGTTCTCTCTGGTGGGCACCGATGCAATCTGCTGGTGAAATTTCCCTTTCGTATAATTGATTATTGAACAAACGTACATACTGGAGAGATTCTGTAAATGTGTATGACGAAATATAGCCAGCTTTTTCCATGAAGATTTTGTCTCCCAGACAATTAATTATAACTAGTTTAAACTGTTTTCATTCATTACACT

mRNA sequence

AGGCAATTAGGTTTTCCAATTTGCTGCCTCATCGAGAAGTTCTTTCGTTCTCTGCTAGGGTTTTCATCGCAATCGCGTATCGTCTTCTTTTTTTCGCAAATCCCAACTTCTTCTCTCTTTTTTCTTTCAAATCTTTGCCGAATCCTTCCCATAATAGACACAGATGTCTCGTTGCTTTCCTTACCCACCTCCTGGTTACGTGAGGAAGGTGGCTAGCACCGAGGCGGCCTTGATCGAATCGATTAAGCTCCAATCTGAAAGACGACAGAGCAAGAATGATAGAAAGAAAGAGAAAAGTAAGGACAAGAAAGAGAAGAGCAAGGACAAGAAAGAGAGAAGTAAGGACAAGAAACACAAAAGCAAAGAACGTAAAGAAAAATCCTCCCACAGCCATGACTTGAAAGATCGGAAACAAAAGGAATGCTTAAACGAAGCCAAGGACCTTCAAAAGGGTACCAAAGTTGAAGCAGAACAATTAGAAAGGAGTGCTCTCACTGAAGAGCATGGACAACCTCATAGCCCTGCCTACTTGTCTGACGGAACTCAGATCAGCCACAAGAGAAAAAGGGATGCTGCATTACAGCCTAATGAAGGTTGCAAAATCATCCGGATCAAACTGGGTTCTTCACTAAGCCAGCAAGAGGATTCATCGGCTGGCAGCGAACAGACGTGTTCTACGTCTGGTCGTGATAATTCTGTTGATCAAAAGAGAGATGAGAACAGCCATGGATCTATTCAGCAAAATACTTTCTTCACCAATGCTGAAACAGCTGTTGCTGTCAAGGATCCCACTTCGTCCAAACCAATGATCAAAGACCCTCCTTTGCATCCTGTGAAGGACATTAGTTCTAAGGGTAATGCTGTGTCGTTACCCCGTCGCACCAGAAGTCCTGCTGAATCTGCTTATGAGGCCTTGTTTGAGAAGTGGGTAGCACCACCTCTTCAATTGGAGCAACAAACAGATGATGAAGAATGGCTCTTTGGAAGAACAAGAAAACAAGATGGACAAAGTACCATGACCAACAAAGCTTTCAGTTCTGTTCCGAGCTGTGGTAGAAGTTCAAGTTTGTGGCCGAGAGGACAACATCTTGCAGATGCTGATGTTTATTCATTACCTTATACGATCCCATTTTGATTTTGAATTCTTTCCTTTGCTGAGTAATATGTACAGTACGCCGGTAGGAATGATAGTCTTCCTTTGGCGTTATAATTGTTTTAGAATCAATATAATTGACATTCAATTTTGTTCTCTCTGGTGGGCACCGATGCAATCTGCTGGTGAAATTTCCCTTTCGTATAATTGATTATTGAACAAACGTACATACTGGAGAGATTCTGTAAATGTGTATGACGAAATATAGCCAGCTTTTTCCATGAAGATTTTGTCTCCCAGACAATTAATTATAACTAGTTTAAACTGTTTTCATTCATTACACT

Coding sequence (CDS)

ATGTCTCGTTGCTTTCCTTACCCACCTCCTGGTTACGTGAGGAAGGTGGCTAGCACCGAGGCGGCCTTGATCGAATCGATTAAGCTCCAATCTGAAAGACGACAGAGCAAGAATGATAGAAAGAAAGAGAAAAGTAAGGACAAGAAAGAGAAGAGCAAGGACAAGAAAGAGAGAAGTAAGGACAAGAAACACAAAAGCAAAGAACGTAAAGAAAAATCCTCCCACAGCCATGACTTGAAAGATCGGAAACAAAAGGAATGCTTAAACGAAGCCAAGGACCTTCAAAAGGGTACCAAAGTTGAAGCAGAACAATTAGAAAGGAGTGCTCTCACTGAAGAGCATGGACAACCTCATAGCCCTGCCTACTTGTCTGACGGAACTCAGATCAGCCACAAGAGAAAAAGGGATGCTGCATTACAGCCTAATGAAGGTTGCAAAATCATCCGGATCAAACTGGGTTCTTCACTAAGCCAGCAAGAGGATTCATCGGCTGGCAGCGAACAGACGTGTTCTACGTCTGGTCGTGATAATTCTGTTGATCAAAAGAGAGATGAGAACAGCCATGGATCTATTCAGCAAAATACTTTCTTCACCAATGCTGAAACAGCTGTTGCTGTCAAGGATCCCACTTCGTCCAAACCAATGATCAAAGACCCTCCTTTGCATCCTGTGAAGGACATTAGTTCTAAGGGTAATGCTGTGTCGTTACCCCGTCGCACCAGAAGTCCTGCTGAATCTGCTTATGAGGCCTTGTTTGAGAAGTGGGTAGCACCACCTCTTCAATTGGAGCAACAAACAGATGATGAAGAATGGCTCTTTGGAAGAACAAGAAAACAAGATGGACAAAGTACCATGACCAACAAAGCTTTCAGTTCTGTTCCGAGCTGTGGTAGAAGTTCAAGTTTGTGGCCGAGAGGACAACATCTTGCAGATGCTGATGTTTATTCATTACCTTATACGATCCCATTTTGA

Protein sequence

MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSKDKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQPHSPAYLSDGTQISHKRKRDAALQPNEGCKIIRIKLGSSLSQQEDSSAGSEQTCSTSGRDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISSKGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTMTNKAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF

Homology

[Close]

BLAST of Lsi08G013040 vs. ExPASy TrEMBL
Match: A0A5A7VB55 (DNA ligase 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001500 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 2.4e-115
Identity = 255/336 (75.89%), Postives = 271/336 (80.65%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVASTEAALIESIKLQSE RQSKNDRK EK + KKEKSKDKKERSK
Sbjct: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSE-RQSKNDRKNEKRRHKKEKSKDKKERSK 60

Query: 61  DKKHKSKER---KEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ- 120
           DKKHKSKER   KEKSSHS  L D+K  +CL E KDL  GTKVEAEQLERS LTEEHGQ 
Sbjct: 61  DKKHKSKERKEHKEKSSHSRSLNDQKHNKCLKEVKDLLDGTKVEAEQLERSGLTEEHGQP 120

Query: 121 --PHSPAYLSDGTQISHKRKRDAALQPNEGC---KIIRIKLGS--SLSQQEDSSAGSEQT 180
             P SPAYLSDGTQI HKRKR A  QP+EGC   KIIRIKL S  SLSQQEDS+AGSEQ 
Sbjct: 121 VWPQSPAYLSDGTQIDHKRKRQAETQPDEGCKPGKIIRIKLASAPSLSQQEDSAAGSEQM 180

Query: 181 CSTSGRDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISS 240
           CSTSGR NS DQK D +SHGS+       NAETAVAV  PT S P I+ PPLHP+ D +S
Sbjct: 181 CSTSGRYNSFDQKTDGDSHGSV------ANAETAVAV-HPTLSNPKIEHPPLHPIGDRNS 240

Query: 241 KGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTM--TN 300
           K   VS+P R RS AESAYEALFE+WVAPPL LEQQTDDEEWLFG TRKQDG+STM   N
Sbjct: 241 KSTVVSVPSRKRSSAESAYEALFEEWVAPPLLLEQQTDDEEWLFGTTRKQDGRSTMANNN 300

Query: 301 KAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
            AFS+V SCGRSS+LWPRGQ+L DADVYSLPYTIPF
Sbjct: 301 NAFSTVSSCGRSSNLWPRGQYLVDADVYSLPYTIPF 328

[Close]

BLAST of Lsi08G013040 vs. ExPASy TrEMBL
Match: A0A1S3BBZ0 (uncharacterized protein LOC103488397 OS=Cucumis melo OX=3656 GN=LOC103488397 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 2.4e-115
Identity = 255/336 (75.89%), Postives = 271/336 (80.65%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVASTEAALIESIKLQSE RQSKNDRK EK + KKEKSKDKKERSK
Sbjct: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSE-RQSKNDRKNEKRRHKKEKSKDKKERSK 60

Query: 61  DKKHKSKER---KEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ- 120
           DKKHKSKER   KEKSSHS  L D+K  +CL E KDL  GTKVEAEQLERS LTEEHGQ 
Sbjct: 61  DKKHKSKERKEHKEKSSHSRSLNDQKHNKCLKEVKDLLDGTKVEAEQLERSGLTEEHGQP 120

Query: 121 --PHSPAYLSDGTQISHKRKRDAALQPNEGC---KIIRIKLGS--SLSQQEDSSAGSEQT 180
             P SPAYLSDGTQI HKRKR A  QP+EGC   KIIRIKL S  SLSQQEDS+AGSEQ 
Sbjct: 121 VWPQSPAYLSDGTQIDHKRKRQAETQPDEGCKPGKIIRIKLASAPSLSQQEDSAAGSEQM 180

Query: 181 CSTSGRDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISS 240
           CSTSGR NS DQK D +SHGS+       NAETAVAV  PT S P I+ PPLHP+ D +S
Sbjct: 181 CSTSGRYNSFDQKTDGDSHGSV------ANAETAVAV-HPTLSNPKIEHPPLHPIGDRNS 240

Query: 241 KGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTM--TN 300
           K   VS+P R RS AESAYEALFE+WVAPPL LEQQTDDEEWLFG TRKQDG+STM   N
Sbjct: 241 KSTVVSVPSRKRSSAESAYEALFEEWVAPPLLLEQQTDDEEWLFGTTRKQDGRSTMANNN 300

Query: 301 KAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
            AFS+V SCGRSS+LWPRGQ+L DADVYSLPYTIPF
Sbjct: 301 NAFSTVSSCGRSSNLWPRGQYLVDADVYSLPYTIPF 328

[Close]

BLAST of Lsi08G013040 vs. ExPASy TrEMBL
Match: A0A6J1HBK0 (DNA ligase 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462522 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.6e-111
Identity = 248/329 (75.38%), Postives = 275/329 (83.59%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVA TEAALIESIKLQSERRQ K D KKEKSK KKEKSKD+K +SK
Sbjct: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSK 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ---P 120
           ++    KERKEKSS S  L D+KQK C+ EAKD  +GTKVEAEQLE+S LTEEHGQ   P
Sbjct: 61  ER----KERKEKSSRS--LNDQKQKACVKEAKDRLEGTKVEAEQLEKSGLTEEHGQPVWP 120

Query: 121 HSPAYLSDGTQISHKRKRDAALQPNEGC---KIIRIKLGSSLSQQEDSSAGSEQTCSTSG 180
           HSP YLSDGTQI+HKRKRD +LQP+EGC   K+IRIKL SSLSQQE+SSAGSEQTCS SG
Sbjct: 121 HSPGYLSDGTQINHKRKRD-SLQPDEGCKPGKVIRIKLASSLSQQENSSAGSEQTCSVSG 180

Query: 181 RDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISSKGNAV 240
           RD S    RDENS   ++++T F N+ETA+AVKD TSSKP IKDPP H VK+ISS GN +
Sbjct: 181 RDCS----RDENS-SVVRRSTCFANSETALAVKDCTSSKPKIKDPPPHAVKEISSLGNVM 240

Query: 241 SLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTMTNKAFSSVP 300
           SLP RTRSP ESAYEALFEKWV PPLQLEQQ DDEEWLF  T KQDG+S+ TN+AFSS+P
Sbjct: 241 SLP-RTRSPVESAYEALFEKWVPPPLQLEQQMDDEEWLF-PTEKQDGRSSKTNEAFSSIP 300

Query: 301 SCGRSSSLWPRGQHLADADVYSLPYTIPF 324
           SC RSSSLWPRGQ+LADADVYSLPYTIP+
Sbjct: 301 SC-RSSSLWPRGQYLADADVYSLPYTIPY 314

[Close]

BLAST of Lsi08G013040 vs. ExPASy TrEMBL
Match: A0A6J1HD43 (uncharacterized protein LOC111462522 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462522 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 1.0e-110
Identity = 247/326 (75.77%), Postives = 274/326 (84.05%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVA TEAALIESIKLQSERRQ K D KKEKSK KKEKSKD+K +SK
Sbjct: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSK 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ---P 120
           ++    KERKEKSS S  L D+KQK C+ EAKD  +GTKVEAEQLE+S LTEEHGQ   P
Sbjct: 61  ER----KERKEKSSRS--LNDQKQKACVKEAKDRLEGTKVEAEQLEKSGLTEEHGQPVWP 120

Query: 121 HSPAYLSDGTQISHKRKRDAALQPNEGCKIIRIKLGSSLSQQEDSSAGSEQTCSTSGRDN 180
           HSP YLSDGTQI+HKRKRD +LQP+EG K+IRIKL SSLSQQE+SSAGSEQTCS SGRD 
Sbjct: 121 HSPGYLSDGTQINHKRKRD-SLQPDEG-KVIRIKLASSLSQQENSSAGSEQTCSVSGRDC 180

Query: 181 SVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISSKGNAVSLP 240
           S    RDENS   ++++T F N+ETA+AVKD TSSKP IKDPP H VK+ISS GN +SLP
Sbjct: 181 S----RDENS-SVVRRSTCFANSETALAVKDCTSSKPKIKDPPPHAVKEISSLGNVMSLP 240

Query: 241 RRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTMTNKAFSSVPSCG 300
            RTRSP ESAYEALFEKWV PPLQLEQQ DDEEWLF  T KQDG+S+ TN+AFSS+PSC 
Sbjct: 241 -RTRSPVESAYEALFEKWVPPPLQLEQQMDDEEWLF-PTEKQDGRSSKTNEAFSSIPSC- 300

Query: 301 RSSSLWPRGQHLADADVYSLPYTIPF 324
           RSSSLWPRGQ+LADADVYSLPYTIP+
Sbjct: 301 RSSSLWPRGQYLADADVYSLPYTIPY 310

[Close]

BLAST of Lsi08G013040 vs. ExPASy TrEMBL
Match: A0A6J1KC15 (uncharacterized protein LOC111492505 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492505 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.5e-109
Identity = 246/347 (70.89%), Postives = 271/347 (78.10%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVA TEAALIESIKLQSERRQ K D KKEKSK KKEKSKD+K +S 
Sbjct: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSN 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ---P 120
           ++    KE KEKSS S DL D+K K C+ EAKD  +GTKVEAEQLE+S LTEEHGQ   P
Sbjct: 61  ER----KESKEKSSRSRDLNDQKHKVCVKEAKDRLEGTKVEAEQLEKSGLTEEHGQPVWP 120

Query: 121 HSPAYLSDGTQISHKRKRDAALQPNEGC---KIIRIKLGSSLSQQEDSSAGSEQTCSTSG 180
           HSP YLSDGTQI+HKRKRD +LQP+EGC   K+IRIKL SSLSQQE+SSAG E TCS SG
Sbjct: 121 HSPGYLSDGTQINHKRKRDDSLQPDEGCKPGKVIRIKLASSLSQQENSSAGCELTCSVSG 180

Query: 181 RDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKD-------- 240
           RD S DQK DENS   ++++T F N+ETA AVKD TSSKP IKDPP H VKD        
Sbjct: 181 RDISRDQKSDENS-SVVRRSTCFANSETARAVKDCTSSKPKIKDPPPHAVKDRTSSKPKI 240

Query: 241 ----------ISSKGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRT 300
                     ISS GN +SLP RTRSP ESAYEALFEKWV PPLQLEQQ DDEEWLF  T
Sbjct: 241 KDPSPHAVKEISSLGNVMSLP-RTRSPVESAYEALFEKWVPPPLQLEQQMDDEEWLF-PT 300

Query: 301 RKQDGQSTMTNKAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
            KQDG+ST TN+AFSS+PSC R+SSLWPRGQ+LA ADVYSLPYTIP+
Sbjct: 301 EKQDGRSTKTNEAFSSIPSC-RNSSLWPRGQYLAVADVYSLPYTIPY 339

[Close]

BLAST of Lsi08G013040 vs. NCBI nr
Match: XP_038885448.1 (DNA ligase 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 496.5 bits (1277), Expect = 1.7e-136
Identity = 286/329 (86.93%), Postives = 294/329 (89.36%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKND KKEKSK KKEKSKDKKERSK
Sbjct: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDSKKEKSKHKKEKSKDKKERSK 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ---P 120
           DKKHKSKERKEKSSHS DL D+KQKECL EAK+L KGTKVEAEQLERS LTEEHGQ   P
Sbjct: 61  DKKHKSKERKEKSSHSRDLNDQKQKECLKEAKELLKGTKVEAEQLERSGLTEEHGQPVWP 120

Query: 121 HSPAYLSDGTQISHKRKRDAALQPNEGC---KIIRIKLGSSLSQQEDSSAGSEQTCSTSG 180
            SP YLSDGTQI+HKRKRDA+LQ NEGC   KIIRIKL  SLSQQEDSSAGSEQTCSTSG
Sbjct: 121 QSPGYLSDGTQINHKRKRDASLQSNEGCKPGKIIRIKL--SLSQQEDSSAGSEQTCSTSG 180

Query: 181 RDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISSKGNAV 240
           RD SVDQKRDENS GSIQQNT FT A TAVAV DP+SSKP I+      VKDISSKGN V
Sbjct: 181 RDISVDQKRDENSRGSIQQNTGFTYAGTAVAVNDPSSSKPKIQS-----VKDISSKGNVV 240

Query: 241 SLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTMTNKAFSSVP 300
           SLP RTRSPAESAYEALFEKWVAPPLQLEQQTDDE+WLFGRTRKQDGQST  NKAFSSVP
Sbjct: 241 SLPPRTRSPAESAYEALFEKWVAPPLQLEQQTDDEDWLFGRTRKQDGQST-NNKAFSSVP 300

Query: 301 SCGRSSSLWPRGQHLADADVYSLPYTIPF 324
           SCGRSSSLWPRGQ+LADADVYSLPYTIPF
Sbjct: 301 SCGRSSSLWPRGQYLADADVYSLPYTIPF 321

[Close]

BLAST of Lsi08G013040 vs. NCBI nr
Match: XP_038885449.1 (nucleoporin GLE1 isoform X2 [Benincasa hispida])

HSP 1 Score: 493.8 bits (1270), Expect = 1.1e-135
Identity = 285/326 (87.42%), Postives = 293/326 (89.88%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKND KKEKSK KKEKSKDKKERSK
Sbjct: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDSKKEKSKHKKEKSKDKKERSK 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ---P 120
           DKKHKSKERKEKSSHS DL D+KQKECL EAK+L KGTKVEAEQLERS LTEEHGQ   P
Sbjct: 61  DKKHKSKERKEKSSHSRDLNDQKQKECLKEAKELLKGTKVEAEQLERSGLTEEHGQPVWP 120

Query: 121 HSPAYLSDGTQISHKRKRDAALQPNEGCKIIRIKLGSSLSQQEDSSAGSEQTCSTSGRDN 180
            SP YLSDGTQI+HKRKRDA+LQ NEG KIIRIKL  SLSQQEDSSAGSEQTCSTSGRD 
Sbjct: 121 QSPGYLSDGTQINHKRKRDASLQSNEG-KIIRIKL--SLSQQEDSSAGSEQTCSTSGRDI 180

Query: 181 SVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISSKGNAVSLP 240
           SVDQKRDENS GSIQQNT FT A TAVAV DP+SSKP I+      VKDISSKGN VSLP
Sbjct: 181 SVDQKRDENSRGSIQQNTGFTYAGTAVAVNDPSSSKPKIQS-----VKDISSKGNVVSLP 240

Query: 241 RRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTMTNKAFSSVPSCG 300
            RTRSPAESAYEALFEKWVAPPLQLEQQTDDE+WLFGRTRKQDGQST  NKAFSSVPSCG
Sbjct: 241 PRTRSPAESAYEALFEKWVAPPLQLEQQTDDEDWLFGRTRKQDGQST-NNKAFSSVPSCG 300

Query: 301 RSSSLWPRGQHLADADVYSLPYTIPF 324
           RSSSLWPRGQ+LADADVYSLPYTIPF
Sbjct: 301 RSSSLWPRGQYLADADVYSLPYTIPF 317

[Close]

BLAST of Lsi08G013040 vs. NCBI nr
Match: XP_008445332.1 (PREDICTED: uncharacterized protein LOC103488397 [Cucumis melo] >KAA0064838.1 DNA ligase 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 425.2 bits (1092), Expect = 4.9e-115
Identity = 255/336 (75.89%), Postives = 271/336 (80.65%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVASTEAALIESIKLQSE RQSKNDRK EK + KKEKSKDKKERSK
Sbjct: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSE-RQSKNDRKNEKRRHKKEKSKDKKERSK 60

Query: 61  DKKHKSKER---KEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ- 120
           DKKHKSKER   KEKSSHS  L D+K  +CL E KDL  GTKVEAEQLERS LTEEHGQ 
Sbjct: 61  DKKHKSKERKEHKEKSSHSRSLNDQKHNKCLKEVKDLLDGTKVEAEQLERSGLTEEHGQP 120

Query: 121 --PHSPAYLSDGTQISHKRKRDAALQPNEGC---KIIRIKLGS--SLSQQEDSSAGSEQT 180
             P SPAYLSDGTQI HKRKR A  QP+EGC   KIIRIKL S  SLSQQEDS+AGSEQ 
Sbjct: 121 VWPQSPAYLSDGTQIDHKRKRQAETQPDEGCKPGKIIRIKLASAPSLSQQEDSAAGSEQM 180

Query: 181 CSTSGRDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISS 240
           CSTSGR NS DQK D +SHGS+       NAETAVAV  PT S P I+ PPLHP+ D +S
Sbjct: 181 CSTSGRYNSFDQKTDGDSHGSV------ANAETAVAV-HPTLSNPKIEHPPLHPIGDRNS 240

Query: 241 KGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQDGQSTM--TN 300
           K   VS+P R RS AESAYEALFE+WVAPPL LEQQTDDEEWLFG TRKQDG+STM   N
Sbjct: 241 KSTVVSVPSRKRSSAESAYEALFEEWVAPPLLLEQQTDDEEWLFGTTRKQDGRSTMANNN 300

Query: 301 KAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
            AFS+V SCGRSS+LWPRGQ+L DADVYSLPYTIPF
Sbjct: 301 NAFSTVSSCGRSSNLWPRGQYLVDADVYSLPYTIPF 328

[Close]

BLAST of Lsi08G013040 vs. NCBI nr
Match: XP_023545923.1 (uncharacterized protein LOC111805212 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.1 bits (1076), Expect = 3.5e-113
Identity = 252/347 (72.62%), Postives = 276/347 (79.54%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVA TEAALIESIKLQSERRQ K D KKEKSK KKEKSKD+K +SK
Sbjct: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSK 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ---P 120
           ++    KE KEKSS S DL D+KQK C+ E KD  +GTKVEAEQLE+S LTEEHGQ   P
Sbjct: 61  ER----KESKEKSSRSRDLNDQKQKACVKEVKDRLEGTKVEAEQLEKSGLTEEHGQPVWP 120

Query: 121 HSPAYLSDGTQISHKRKRDAALQPNEGC---KIIRIKLGSSLSQQEDSSAGSEQTCSTSG 180
           HSP YLSDGTQI+ KRKRD +LQP+EGC   K+IRIKL SSLSQQE+SSAGSEQ CS SG
Sbjct: 121 HSPGYLSDGTQINQKRKRDDSLQPDEGCKPGKVIRIKLASSLSQQENSSAGSEQMCSVSG 180

Query: 181 RDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKD-------- 240
           RD S DQK DENS  S++++T F N+ETA+AVKD TSSKP IKDPP H VKD        
Sbjct: 181 RDCSRDQKSDENS--SVRRSTCFANSETALAVKDCTSSKPKIKDPPPHAVKDRTSSKPKI 240

Query: 241 ----------ISSKGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRT 300
                     ISS GN +SLP RTRSP ESAYEALFEKWV PPLQLEQQ DDEEWLF RT
Sbjct: 241 KDPSPHAVKEISSLGNVMSLP-RTRSPVESAYEALFEKWVPPPLQLEQQMDDEEWLF-RT 300

Query: 301 RKQDGQSTMTNKAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
            KQDG+ST TN+AFSSVPSC RSSSLWPRGQ+LADADVYSLPYTIP+
Sbjct: 301 EKQDGRSTKTNEAFSSVPSC-RSSSLWPRGQYLADADVYSLPYTIPY 338

[Close]

BLAST of Lsi08G013040 vs. NCBI nr
Match: XP_023545924.1 (serine/threonine-protein kinase PRP4 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.4 bits (1069), Expect = 2.3e-112
Identity = 251/344 (72.97%), Postives = 275/344 (79.94%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSRCFPYPPPGYVRKVA TEAALIESIKLQSERRQ K D KKEKSK KKEKSKD+K +SK
Sbjct: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSK 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQ---P 120
           ++    KE KEKSS S DL D+KQK C+ E KD  +GTKVEAEQLE+S LTEEHGQ   P
Sbjct: 61  ER----KESKEKSSRSRDLNDQKQKACVKEVKDRLEGTKVEAEQLEKSGLTEEHGQPVWP 120

Query: 121 HSPAYLSDGTQISHKRKRDAALQPNEGCKIIRIKLGSSLSQQEDSSAGSEQTCSTSGRDN 180
           HSP YLSDGTQI+ KRKRD +LQP+EG K+IRIKL SSLSQQE+SSAGSEQ CS SGRD 
Sbjct: 121 HSPGYLSDGTQINQKRKRDDSLQPDEG-KVIRIKLASSLSQQENSSAGSEQMCSVSGRDC 180

Query: 181 SVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKD----------- 240
           S DQK DENS  S++++T F N+ETA+AVKD TSSKP IKDPP H VKD           
Sbjct: 181 SRDQKSDENS--SVRRSTCFANSETALAVKDCTSSKPKIKDPPPHAVKDRTSSKPKIKDP 240

Query: 241 -------ISSKGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEEWLFGRTRKQ 300
                  ISS GN +SLP RTRSP ESAYEALFEKWV PPLQLEQQ DDEEWLF RT KQ
Sbjct: 241 SPHAVKEISSLGNVMSLP-RTRSPVESAYEALFEKWVPPPLQLEQQMDDEEWLF-RTEKQ 300

Query: 301 DGQSTMTNKAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
           DG+ST TN+AFSSVPSC RSSSLWPRGQ+LADADVYSLPYTIP+
Sbjct: 301 DGRSTKTNEAFSSVPSC-RSSSLWPRGQYLADADVYSLPYTIPY 334

[Close]

BLAST of Lsi08G013040 vs. TAIR 10
Match: AT1G20100.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits to 438 proteins in 92 species: Archae - 0; Bacteria - 14; Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other Eukaryotes - 105 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-12
Identity = 99/338 (29.29%), Postives = 152/338 (44.97%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSR F  PPP Y R  A+ +  L+E  K++     SK   +KEK + KKEK   K+++S 
Sbjct: 1   MSRYFTSPPPVYARNWANGQ-NLVEWTKIERPIVDSKKLHRKEKKEKKKEKKLKKEKKSL 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQPHSP 120
           ++K+ +                             K    E+EQLE+S LTEE  QP   
Sbjct: 61  EQKYST----------------------------TKTVSYESEQLEKSCLTEEFEQP-QV 120

Query: 121 AYLSDGTQISHKRKRDAA---------LQPNEGCKIIRIKLGSSLSQQEDSSAGSEQTCS 180
            YLSDG+Q S KR+R+ +           P  G K +RI++     ++ ++    +  CS
Sbjct: 121 GYLSDGSQNSKKRRRETSPAVVESQIKATPVAG-KPLRIRIVFKKPKEAEAVPQEDPVCS 180

Query: 181 TSGRDNSVDQKRDENSHGSIQQNTFFTNAETAVAVKDPTSSKPMIKDPPLHPVKDISSKG 240
           TSG       +R      S+   +   + + AV      S K  I          IS   
Sbjct: 181 TSG------TQRPSELPSSVSLPS-ICDHDVAVPSTSLESGKVAI----------ISE-- 240

Query: 241 NAVSLPRRTRSPA-ESAYEALFEKWVAPPLQLEQ-QTDDEEWLFGRTRKQDGQST----M 300
              S  R+   P+ ES Y +LF++ V P + LE+  +  ++WLFG +RK++  S      
Sbjct: 241 ---SKKRKKHKPSKESRYNSLFDELVPPCISLEEDDSSSDDWLFGTSRKENVSSAKSSYK 285

Query: 301 TNKAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
           T++         R  S  PR   L++  ++SLPYT+PF
Sbjct: 301 TDEDTIMSLQTSRDCSSLPRAMLLSEVGIFSLPYTVPF 285

[Close]

BLAST of Lsi08G013040 vs. TAIR 10
Match: AT1G75860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-10
Identity = 99/340 (29.12%), Postives = 144/340 (42.35%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKERSK 60
           MSR    PP  + R     +  L+ES KL+     SK   + EK K+KKEK K+KKE  +
Sbjct: 1   MSRVLTCPPLVFARNHVGVQ-NLVESTKLKRITLDSKKAHRIEK-KEKKEKRKEKKETKR 60

Query: 61  DKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHGQPHSP 120
           +K HK         HS    D   K     +K +      E++ LE+S LT+E  +P   
Sbjct: 61  EKSHK---------HSIKATDNHHKLIFLPSKKVSD----ESDSLEKSGLTDELEEPQKH 120

Query: 121 -AYLSDGTQISHKRKRDAALQPNEGC--------KIIRIKLGSSLSQQEDSSAGSEQ-TC 180
             YLSDG+Q S KR RD +    E          K +RI++     ++E  +   E   C
Sbjct: 121 LGYLSDGSQNSKKRIRDDSPPAVESLIKAAPVAGKPLRIRMVFKKPKEEVPTLPREAVVC 180

Query: 181 STSGRDNSVDQKRDENSHGSIQQNTFFTN-AETAVAVKDPTSSKPMIKDPPLHPVKDISS 240
           ST+   +   Q    +S  S + +    N   T++A  D T  +                
Sbjct: 181 STTVAKSLSHQDVITSSISSSKTSELEKNLPSTSIAAIDETKKR---------------- 240

Query: 241 KGNAVSLPRRTRSPAESAYEALFEKWVAPPLQLEQQTDDEE---WLFGRTRKQDGQSTMT 300
                   ++ RS  E  Y ALF+ W  P + +   + ++    WLFG       Q  + 
Sbjct: 241 --------KKHRSSKEDQYNALFDGWTPPSMCIADASSNDNGDYWLFGNKT----QEVLK 297

Query: 301 NKAFSSVPS---CGRSSSLWPRGQHLADADVYSLPYTIPF 324
            KA   V          S WPR Q L++  +YSLPYT+PF
Sbjct: 301 PKAAVKVDDDTMMRPGDSSWPRAQFLSEVGIYSLPYTVPF 297

[Close]

BLAST of Lsi08G013040 vs. TAIR 10
Match: AT2G17787.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35940.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 2.2e-04
Identity = 93/342 (27.19%), Postives = 149/342 (43.57%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRK-KEKSKDKKEKSKDKKERS 60
           MSRC+P+PPPGYV K      +LIESIK    + + K DRK K   KD+K++  ++  RS
Sbjct: 1   MSRCYPFPPPGYVWK-----ESLIESIK--GAKEEVKKDRKHKRNEKDRKDRD-NEAGRS 60

Query: 61  KDKKHKSKERKEKSSHSHDLKDRK----QKECLNEAKDLQKGTKVEAEQLERSALTEEHG 120
           +  +HK + + E +  S  L   +    +K C     +LQ  ++   +    S    +  
Sbjct: 61  RKHRHKRRRKDEGAIASGKLVSSEVELLEKSCQTVELELQTSSQNSCDSTLHSNERPKQI 120

Query: 121 QPHSPAYLSDGTQISHKRKRDAALQPNEGCKIIRIKLGSSLSQQE-DSSAGSEQTCSTSG 180
           Q       S  T++  K + D    P +G  +         S++  D+S  +     + G
Sbjct: 121 QSQPLDETSIRTRLPDKGQED----PEDGVMMTSKDQKQRFSREMLDASQAATAPNESVG 180

Query: 181 RDNSVDQKRDENSHGSIQQNTFFTNAE-TAVAVKDPTSSKPMIKDP------PLHPVKDI 240
                 +KR + + GS ++ T   N E  +V  KD        K P      PL   K  
Sbjct: 181 HSRVCQEKRIDPTFGSSREITTKLNKEKKSVPSKDNRKVSKEKKMPSLSSCNPLEQEKPT 240

Query: 241 SS----KGNAVSLPRRTRSPAESAYEALFEKWVAPPLQ--LEQQTDDEEWLFGRTRKQDG 300
           SS     G +  L R+           L E W    ++  L    D E WLF +   +  
Sbjct: 241 SSHQETPGPSKLLCRKCPPSMAGQLLNLIENWAPDRVESKLTDSEDQEWWLFIKFGAKSP 300

Query: 301 QSTMTNKAFSSVPSCGRSSSLWPRGQHLADADVYSLPYTIPF 324
           Q  ++N+  +     G SS +WP  + L +A+V++LP+T+PF
Sbjct: 301 Q--VSNQKTNQ----GSSSMVWPTARFLPEAEVHALPFTVPF 324

[Close]

BLAST of Lsi08G013040 vs. TAIR 10
Match: AT4G35940.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17787.1). )

HSP 1 Score: 44.3 bits (103), Expect = 2.2e-04
Identity = 111/408 (27.21%), Postives = 167/408 (40.93%), Query Frame = 0


Query: 1   MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDRKKEKSKDKKEKSKDKKER-- 60
           MSRCFP+PPPGYV      EA ++ SIK   E +  K  R+K++  DKK+K KDKKER  
Sbjct: 1   MSRCFPFPPPGYVLNGIRDEAVIVSSIK-GVEEKAKKEQRRKDRRSDKKDK-KDKKERKE 60

Query: 61  ---SKDKKHKSKERKEKSSHSHDLKDRKQKECLNEAKDLQKGTKVEAEQLERSALTEEHG 120
               K+KK K +E KE  S     K R++KE   +     K  + E   LE+S+LT E  
Sbjct: 61  KKEKKEKKRKEREGKEVGSEKRSHK-RRRKEDGAKVDLFHKLKESEVNCLEKSSLTVERE 120

Query: 121 QPHSPAYLS----------------------------------------DGTQISHKRKR 180
              S +  S                                        DG   ++  KR
Sbjct: 121 LLQSTSQNSCDSTLNSNEMLPKQKEVQQPLDGRHNNNNNEKRVEKQQPLDGRHNNNNEKR 180

Query: 181 DAALQPNEG----CKIIRIKLGSSLSQQEDSSAGS--EQTCSTSGRDNSVDQKRDENS-- 240
               QP +G        RI+    L+ + +++     E+    +GR N+ ++KR E    
Sbjct: 181 VEKQQPLDGRHNNNNEKRIEKQQPLNGRHNNNNEKLMEKQQPLNGRHNNNNEKRIEKQQP 240

Query: 241 ----HGSIQQ--------NTFFTNAETAVAVKDPTSSKPMIKDPPL---HPVKDISSKGN 300
               H + ++        +    N ++A     P   K   KDP     H  + ISS   
Sbjct: 241 LNGRHNNKEKQKEKQQPLDVRHNNNDSAEHASKPREEKR--KDPIFRGKHGKEKISS--- 300

Query: 301 AVSLPRRTRSPAES----------AYEALFEKWVAPPLQLEQQTD----DEEWLFGRTRK 324
             S  R T  P +S           +  + E WV  P  +E++ D    ++E  +   +K
Sbjct: 301 --SSTRETYQPPKSLCNCPPSMVLQFLDVVENWV--PNTIERRVDLINSEDEECWWSMKK 360

The following BLAST results are available for this feature:

BLAST of Lsi08G013040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G013040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VB55	2.4e-115	75.89	DNA ligase 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3BBZ0	2.4e-115	75.89	uncharacterized protein LOC103488397 OS=Cucumis melo OX=3656 GN=LOC103488397 PE=...	[more]
A0A6J1HBK0	1.6e-111	75.38	DNA ligase 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462522 PE=4 SV=1	[more]
A0A6J1HD43	1.0e-110	75.77	uncharacterized protein LOC111462522 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KC15	1.5e-109	70.89	uncharacterized protein LOC111492505 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi08G013040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885448.1	1.7e-136	86.93	DNA ligase 1 isoform X1 [Benincasa hispida]	[more]
XP_038885449.1	1.1e-135	87.42	nucleoporin GLE1 isoform X2 [Benincasa hispida]	[more]
XP_008445332.1	4.9e-115	75.89	PREDICTED: uncharacterized protein LOC103488397 [Cucumis melo] >KAA0064838.1 DNA...	[more]
XP_023545923.1	3.5e-113	72.62	uncharacterized protein LOC111805212 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023545924.1	2.3e-112	72.97	serine/threonine-protein kinase PRP4 homolog isoform X2 [Cucurbita pepo subsp. p...	[more]

BLAST of Lsi08G013040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20100.1	1.7e-12	29.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G75860.1	3.5e-10	29.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G17787.1	2.2e-04	27.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G35940.2	2.2e-04	27.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..69
None	No IPR available	COILS	Coil	Coil	coord: 88..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..143
None	No IPR available	PANTHER	PTHR34660:SF7	DNA LIGASE	coord: 1..323
None	No IPR available	PANTHER	PTHR34660	MYB-LIKE PROTEIN X	coord: 1..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G013040.1	Lsi08G013040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016874	ligase activity