Lsi08G012690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G012690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription initiation factor TFIID subunit 10
Locationchr08: 21113506 .. 21116696 (+)
RNA-Seq ExpressionLsi08G012690
SyntenyLsi08G012690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGCAATTTAAACGAGCTTGATTACGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAGGCGACAGGGAGCAGGCACGACGATGATGCAGCGCTCTCCGAGTTTCTAGCATCGCTAATGGAGTATACTCCCACTGTAAGATCTCATTTTGATGCTTCTTAACCTCAAGTCGCCTCTTTTCCTCCACGCGTTTTTCTGCAAGTTCAAATCACGTCGTTTTTTTTTTTTGGGCTATCGTTTTACAGATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTCGTTTGTTTTTATATTTTCGTTCATCAAAACCCTAGGTCTAAAACGCGGTCTTTCGACCGACAGATGAGATGGATATATCTTTCCCCTAATGAATTCGTTGGTGCTGCTTTCTTTTCACAATTTAATCGTACTTGGAGAATTTTTCATTCAGTTGGTTCTTGACTGAATATCGATCAAAGTCAAGCTTGATTAGATTAGGTCGTGGGTTTTAATTTGGGAAATTCTTATTTTGAGTATTTTTTGTTCTAAAGAGACAATGTTCGTTGTTGTTTCTGATTTTTTGTTTGGAAGCTGCCTGTACACTGCTCGATCTATATAAATGAACTGAGGGTGAGATTGGAGGAGCAGGGATTTTTTTTTAATCACAGTTCCCAACTCATTCCCTTTAAAGAAATGGGGAATCTTCACTCTGGTATCGGGGTTCCCAGTGGTCTAATTCTTGATGTATACTTTGTAGGTTAGACACAATGTATTCTTGCACGGTTTGTTCTGTAGTAGTGTTATTAGACATGAAGATGGCTCTTTTAGTGTTCGTAGTGGTATTCTCGGTGGCAATCATTGATGCGGACTATTGATTTCAATGAGTGTGCATTTCTATACTGAGAATTTACTGGGGAAGAGTAGAGATTTTAATCTAATTCAGAGAATACAATGTACTTTGCCATCTTTGTAATGAGCTGAGATGATTTCTTCAAAGTTATTAAATTTCTTTCGATATTTTCCAATGATTCTTCTACTCTTGTCTCCCATTTCATTTCTTACTTTTTTTCCCCCTGCAAGTTATATGTCTAAATTTTTGAAAAATGGAGAGGATATAAGTCATTTGAGATCTTTGATTATTATGAGATAGATTTCTTAAGCTTGGCCTGGTTAATTGCTTTCTAGGTAAAGTGATACTCAGTTTTGATTAGCTTTAAATGCGTTCACCATCATATGTGATGTTTGTAATTAGAAATTGGCTTTCTATTTGTTGTGAAGACTAGTTTACATTGTTTCTTATAGAGCTTCACTTTTGTAGGATCAGGCTTGTTGCTGTTGCCACGCAGAAGTTCGTTGCAGATGTTGCGAGTGATGCTCTCCAGTATGCTTTCTTTTTTCTTTCTCATTTTGCCTGAGGGGTGCAAGTAGAATATAATCATAACTTGGTTGCAGACCTTATAAAAAAAAAGAAGCGATACTATGCTACAGAATATTACTTTTTATTCATAATCACGAGAATGCAATTGGTTAATCTGATGGGATTGGCCCTAGAGTCTGAGGACCAATTTTCTGGAAACAATCCTATGCTGCAGAATATTTCTTTTTATAGAGTTCAACAACCATTGATCTCAATTGAACATCAGTTCTATAGGTTGTACAACTATGTCCTTGAGTTTTATAGTGTTACAACCACTTAGCTAGGAGGACAAAGGCCTTGCCAAATTCCTAATGCACAACCAGCGGTTATGCATGACGTGGTAATTGTCTCCCACTTAACAAGATGAGACCCTCATTTCCTCCTTAATTCCCTTCCAAAAAAATCCCTTATAATCCTTTTCTGCTTGGAACACAAAGACTAAGAAATCTTAGTAAGGATAGAAAATAGATAGGGATCCCACTAAAGGTTATTAATGCTGATCTTCCACCCTTTGAGAGCAAGGCTTTCGCCAATCTCCCATAAAAGATAGGTGCTCCTAAATGTGTCATGGGAAGTAAGAAACCTTACAGCTGAATGTACGATCTCATCTTTCAAGATTATCAGGGTTTCAAAAAGAAACTTACTGAACAGTTTTTACTGTAAATCCAACGATTAGTGAACTATAACAAACAACTATTAGGAGATCAATTTACTCTCATTAATCCTCTACAGCTGCCCTCACGCACCTATTAATCTTTCTTTAGTTGATTAATTTGATTGGTTTTATCAAGTTGATTTGCTCTCACGCATCTATAAAGGGTGTTTTATTATTATTTGAAAATTTTATTTTTTTCTTGACTGGTTTCTTTAGTTTTCCTCATATTTTGTGGGTTCCTTTTTCGTATGCTTCCCCCCCCCCCCCAAAGAAAGTTAAGTTTCTCATTAAAAAAACTTCTTTTGTTGTACAATGTAGGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGTGCATCTTTCACAACTCTAGGTCTCTTGATTGATAAATTATTTGGCCAGTCTAACTTTCTTCTGCTTCAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCGAAGGCACTTCGTGAGGTAAGCTCAAAATGTTATTTACTTCTGACCTAGCTTTTGTGCTTGGGATGGATAATGCATATACAGACATGAGATCATTAGTTTGATTTGCAACTCTCATTTTTAGGTGGTGCTATGGGAGGGGTTTTTCTTTTCTCTTCTCTCTCTTTTTTTTTTTTAATAAAAAAATTTTGGTGGGTGGGGGGAATGGGTTGTTTTGAACTTCTGCTCCATGTCACTTCAGGGGAGTTTTTATTAGTACTGTGATCTGTTATGAAGTTTGTCTGGTTTATCTGTGTAATAGATTCCTGGCAGGCTGTAATCTTGTGGAGAATTTTTTATTTTTTAGTGTAGTTGCATGGTGCATCTTCAACATCTTACAGTTTCCACTCGGCGGGAAATCTTTAATGTGCATGTTTTCTCATTTTATGCCCAAATACTTTGTAATTGATACCCTTTTGAACATAGACACTTGATGATCTAGTTGCTTATCCATAACTAACCGCCTTGTTGGTACTTGATGAACAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA

mRNA sequence

GGAGCAATTTAAACGAGCTTGATTACGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAGGCGACAGGGAGCAGGCACGACGATGATGCAGCGCTCTCCGAGTTTCTAGCATCGCTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCCACGCAGAAGTTCGTTGCAGATGTTGCGAGTGATGCTCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCGAAGGCACTTCGTGAGTTTCCACTCGGCGGGAAATCTTTAATGTGCATGTTTTCTCATTTTATGCCCAAATACTTTTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA

Coding sequence (CDS)

ATGAACCATAGCCAACAGGCGACAGGGAGCAGGCACGACGATGATGCAGCGCTCTCCGAGTTTCTAGCATCGCTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCCACGCAGAAGTTCGTTGCAGATGTTGCGAGTGATGCTCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCGAAGGCACTTCGTGAGTTTCCACTCGGCGGGAAATCTTTAATGTGCATGTTTTCTCATTTTATGCCCAAATACTTTTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA

Protein sequence

MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
Homology
[Close]
BLAST of Lsi08G012690 vs. ExPASy Swiss-Prot
Match: O04173 (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.4e-54
Identity = 114/156 (73.08%), Postives = 125/156 (80.13%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTMEDLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKH EYFADSPSTG+D  +R+E
Sbjct: 121 ----------YGVNVKHPEYFADSPSTGMDPATRDE 134

[Close]
BLAST of Lsi08G012690 vs. ExPASy Swiss-Prot
Match: Q12962 (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-19
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 0 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKH 137
            +  A    +   + KD++  LTMEDL+ AL E                    YG+NVK 
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSE--------------------YGINVKK 217

Query: 138 QEYF 142
             YF
Sbjct: 236 PHYF 217

[Close]
BLAST of Lsi08G012690 vs. ExPASy Swiss-Prot
Match: Q8K0H5 (Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf10 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-19
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 0 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKH 137
            +  A    +   + KD++  LTMEDL+ AL E                    YG+NVK 
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSE--------------------YGINVKK 217

Query: 138 QEYF 142
             YF
Sbjct: 236 PHYF 217

[Close]
BLAST of Lsi08G012690 vs. ExPASy Swiss-Prot
Match: Q9XZT7 (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=7227 GN=Taf10b PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-16
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 0 

Query: 2   NHSQQATG------SRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIR 61
           +H Q + G       R    + LS+F++ L +YTP IPD +  HYL   GFQ  D R++R
Sbjct: 19  SHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVR 78

Query: 62  LVAVATQKFVADVASDALQHCKAR-QAAVVKDKRDKQQKDKRLILTMEDLSKALREF 112
           L+++A QK+++D+  DALQH KAR            + KD++  LTMEDL  AL ++
Sbjct: 79  LISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADY 135

[Close]
BLAST of Lsi08G012690 vs. ExPASy Swiss-Prot
Match: Q9U5W9 (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7227 GN=Taf10 PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-15
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 0 

Query: 14  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDAL 73
           +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DAL
Sbjct: 53  EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112

Query: 74  QHCKARQAAV------VKDKRDKQQKDKRLILTMEDLSKALRE 111
           QHCK R   +         K  K  KD++  L MEDL  AL +
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALAD 155

[Close]
BLAST of Lsi08G012690 vs. ExPASy TrEMBL
Match: A0A1S3BD75 (Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC103488368 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64
Identity = 136/156 (87.18%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of Lsi08G012690 vs. ExPASy TrEMBL
Match: A0A6J1KB50 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111492283 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.0e-64
Identity = 135/156 (86.54%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of Lsi08G012690 vs. ExPASy TrEMBL
Match: A0A6J1HHI7 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111462992 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.0e-64
Identity = 135/156 (86.54%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of Lsi08G012690 vs. ExPASy TrEMBL
Match: A0A0A0LPV6 (Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=Csa_2G383360 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 134/156 (85.90%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of Lsi08G012690 vs. ExPASy TrEMBL
Match: A0A6J1BVJ5 (Transcription initiation factor TFIID subunit 10 OS=Momordica charantia OX=3673 GN=LOC111005104 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 130/156 (83.33%), Postives = 132/156 (84.62%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILTMEDLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVD TSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDPTSREE 136

[Close]
BLAST of Lsi08G012690 vs. NCBI nr
Match: XP_008445293.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 5.5e-64
Identity = 136/156 (87.18%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of Lsi08G012690 vs. NCBI nr
Match: XP_038886703.1 (transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.5e-64
Identity = 136/156 (87.18%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE          
Sbjct: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE---------- 139

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 140 ----------YGVNVKHQEYFADSPSTGVDSTSREE 155

[Close]
BLAST of Lsi08G012690 vs. NCBI nr
Match: KAG6598532.1 (Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 135/156 (86.54%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 292 MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 351

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALRE          
Sbjct: 352 TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALRE---------- 411

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 412 ----------YGVNVKHQEYFADSPSTGVDSTSREE 427

[Close]
BLAST of Lsi08G012690 vs. NCBI nr
Match: XP_022962589.1 (transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997339.1 transcription initiation factor TFIID subunit 10 [Cucurbita maxima] >XP_023547186.1 transcription initiation factor TFIID subunit 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 135/156 (86.54%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of Lsi08G012690 vs. NCBI nr
Match: XP_004138687.1 (transcription initiation factor TFIID subunit 10 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 2.7e-63
Identity = 134/156 (85.90%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKHQEYFADSPSTGVDSTSREE
Sbjct: 121 ----------YGVNVKHQEYFADSPSTGVDSTSREE 136

[Close]
BLAST of Lsi08G012690 vs. TAIR 10
Match: AT4G31720.2 (TBP-associated factor II 15 )

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-55
Identity = 114/156 (73.08%), Postives = 125/156 (80.13%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTMEDLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKH EYFADSPSTG+D  +R+E
Sbjct: 121 ----------YGVNVKHPEYFADSPSTGMDPATRDE 134

[Close]
BLAST of Lsi08G012690 vs. TAIR 10
Match: AT4G31720.1 (TBP-associated factor II 15 )

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-55
Identity = 114/156 (73.08%), Postives = 125/156 (80.13%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKSLMC 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTMEDLSKALRE          
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALRE---------- 120

Query: 121 MFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE 157
                     YGVNVKH EYFADSPSTG+D  +R+E
Sbjct: 121 ----------YGVNVKHPEYFADSPSTGMDPATRDE 134

The following BLAST results are available for this feature:
BLAST of Lsi08G012690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O041732.4e-5473.08Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702... [more]
Q129622.5e-1941.94Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF1... [more]
Q8K0H52.5e-1941.94Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf... [more]
Q9XZT72.6e-1639.32Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=... [more]
Q9U5W94.9e-1540.78Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7... [more]
BLAST of Lsi08G012690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BD752.7e-6487.18Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1KB506.0e-6486.54Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1HHI76.0e-6486.54Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 G... [more]
A0A0A0LPV61.3e-6385.90Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=C... [more]
A0A6J1BVJ52.1e-6183.33Transcription initiation factor TFIID subunit 10 OS=Momordica charantia OX=3673 ... [more]
BLAST of Lsi08G012690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445293.15.5e-6487.18PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ... [more]
XP_038886703.15.5e-6487.18transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida][more]
KAG6598532.11.2e-6386.54Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperm... [more]
XP_022962589.11.2e-6386.54transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997... [more]
XP_004138687.12.7e-6385.90transcription initiation factor TFIID subunit 10 [Cucumis sativus][more]
BLAST of Lsi08G012690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31720.21.7e-5573.08TBP-associated factor II 15 [more]
AT4G31720.11.7e-5573.08TBP-associated factor II 15 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 50..72
score: 64.35
coord: 96..118
score: 41.74
coord: 30..46
score: 60.0
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPFAMPF03540TFIID_30kDacoord: 30..79
e-value: 1.4E-24
score: 85.8
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPIRSFPIRSF017246TFIID_TAF10coord: 1..116
e-value: 2.7E-47
score: 158.7
coord: 129..142
e-value: 15.0
score: 3.1
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 5..111
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitCDDcd07982TAF10coord: 16..141
e-value: 9.49544E-54
score: 163.55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G012690.1Lsi08G012690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016573 histone acetylation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006413 translational initiation
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000124 SAGA complex
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0005634 nucleus
molecular_function GO:1990841 promoter-specific chromatin binding
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0003743 translation initiation factor activity