Lsi08G012480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G012480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Eukaryotic translation initiation factor 5A
Location	chr08: 20955079 .. 20956975 (+)
RNA-Seq Expression	Lsi08G012480
Synteny	Lsi08G012480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACGAAGAGCATCATTTTGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGCTACATTGTCATCAAGGGCCGTCCCTGTAAGGTAAAACCCATTATAATCTTCTCTCTTTCTATTTCATGGAAGGAATTGATCTCCTCTGTTTTCTTTTTCTTTTTTTCTCTGTATCCTCAATTGCTATGGTTTTACTTTTCAGATTAAATTGTGGCTTTGATTGTTGTTGGGTTTTTTAGGGTTAAAATCAGATTTTAATCACTGTTGTTGCTTGTTTGTTTTCAGTAGTTTCCTGCATTATTTAGGAATTTAATTTTTTAAGCTTATTATGAAATCATTAATTTTTTCAGTAATTTTTTTATTAGTTGCTTTCTGAGTTCTACTGACTTCAATTTTTTAAGCTTATTATGCAATCAACATGCTGATTGGACAGGTCTTAAATAGCATCCATAATTTGATTCTCAATCTCTAACAACAATGGTTACTAAATGTTATTGTGTTGTTACTGAACTTACTATCACTTTTTCTCAAAAAAAAAATTTGTTATTATTGTCATTTATATGGTAATTTTACAATTGAATCACTGTTATTTATTATGGATCTCTCCCACATTGCTGAATTAAAGGGGTCTCTTTCCATACATTATTAAAGCAGTAAAAAAAATCAGACTCTAATTCTATTGATTTGTTCATTCAAGAGGCAGTGTTTGAGAGGACGTCTTCGTGTGCTATCAAAGCAATGGCCAATTGGTATAACTGTGTAGGGCTTTGATATTTATATTATTCATTTTAATGATATTATGTTAAAGCAGGTAGTTGAGGTTTCTACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATCTTCACCTCCAAAAAACTTGAAGATATTGTTCCATCATCTCACAACTGTGATGTGAGTATCATCCCATTTGTCTTATTTGCTTATCTTTTTTGGCCTGCTAGCAGTTTTCCTTCTTTTTCCCTTTTGTGTGTGTGTGTTTTTAAATCAGGTTTGCATAGCTGCTTTGTGTCTTATATTCTTCCCATTCCCTCTATAGGTTCCTGAGGTTACTCGTACCGATTATCAGCTCATTGACATATCTGAAGATGGATTTGTGAGTTTCTTTCTCATTATTTTTTATTCGAGTAGGAAAATTTAGGTTAACAACGGATATTTCATCACATATTTGTATGTTGATTCCAACTTAGGCATCATATATCTTTAACTTAATATTGAATAGATCCATTTCTTACTGAAAATAGCCTGTACAAGAGAGTTCATATCCAGCTGAAGTAGTTTGATCTTTACTCTAGTCACATTCTGGACGGTGTCTGCATATCGGTTTAAAATCAAATGGTAAACACAAAAATATAAATTAAAGAATTGAAGGGATATGACTTGTGATGTTAATTGGTTTTCAATAGGTTGTCTGCTTTCTCCACTGTATTCTGCGAGTCTGAAGCTTTAGTATTGTAGTTTACAAAGTTGTGTTGGATTTACTTTGATGCAATGATTGACCGAGTGAAGTCTGGTTTGTTGTTAGGTGAGCCTTTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTTCTACTGATGAAAGTTTACTTGCTCAGGTAAGGCTCTGCACATACTGATTCTCCTAAATTCACAACACACATGTTGCGTATTTTCTTGTTCTCGTATTGTCATTTAGCAATAACTAGCTTCCACACGCTTCATGCTTCGGTTTCAGGTTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAA

mRNA sequence

ATGTCGGACGAAGAGCATCATTTTGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGCTACATTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATCTTCACCTCCAAAAAACTTGAAGATATTGTTCCATCATCTCACAACTGTGATGTTCCTGAGGTTACTCGTACCGATTATCAGCTCATTGACATATCTGAAGATGGATTTGTGAGCCTTTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTTCTACTGATGAAAGTTTACTTGCTCAGGTTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAA

Coding sequence (CDS)

ATGTCGGACGAAGAGCATCATTTTGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGCTACATTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATCTTCACCTCCAAAAAACTTGAAGATATTGTTCCATCATCTCACAACTGTGATGTTCCTGAGGTTACTCGTACCGATTATCAGCTCATTGACATATCTGAAGATGGATTTGTGAGCCTTTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTTCTACTGATGAAAGTTTACTTGCTCAGGTTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAA

Protein sequence

MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTDESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN

Homology

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BLAST of Lsi08G012480 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.0e-80
Identity = 145/159 (91.19%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRK+G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRL TD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LLAQVKDGFAEGKDLV+SVMSAMGEEQICG+KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]

BLAST of Lsi08G012480 vs. ExPASy Swiss-Prot
Match: Q9AXQ6 (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.6e-80
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRL TD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LLAQVKDGFAEGKDLV+SVMSAMGEEQICG+KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]

BLAST of Lsi08G012480 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.5e-80
Identity = 145/159 (91.19%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRL TD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LL Q+KDGFAEGKDLVVSVMSAMGEEQIC LKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Lsi08G012480 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 5.9e-80
Identity = 143/159 (89.94%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRL TD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LLA +KDGFAEGKDLV+SVMSAMGEEQICG+KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]

BLAST of Lsi08G012480 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 5.9e-80
Identity = 143/159 (89.94%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRL TD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LLA +KDGFAEGKDLV+SVMSAMGEEQICG+KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]

BLAST of Lsi08G012480 vs. ExPASy TrEMBL
Match: A0A1S3BC90 (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103488350 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.3e-84
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRL TD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           ESLLAQ+KDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN
Sbjct: 121 ESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of Lsi08G012480 vs. ExPASy TrEMBL
Match: A0A0A0LPT1 (Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_2G382670 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.5e-83
Identity = 155/160 (96.88%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT KK+EDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRL TD
Sbjct: 61  VAIDIFTGKKVEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           ESLL Q+KDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN
Sbjct: 121 ESLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of Lsi08G012480 vs. ExPASy TrEMBL
Match: A0A6J1HCD8 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111462714 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81
Identity = 152/160 (95.00%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTFPQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRL TD
Sbjct: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           +SLL Q+KDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK+
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160

[Close]

BLAST of Lsi08G012480 vs. ExPASy TrEMBL
Match: W9S3D3 (Eukaryotic translation initiation factor 5A OS=Morus notabilis OX=981085 GN=L484_013212 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.4e-81
Identity = 150/160 (93.75%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNG+TKDDLRL TD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           E+LL+Q+KDGFAEGKDLVVSVMSAMGEEQIC LKDIGPKN
Sbjct: 121 EALLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of Lsi08G012480 vs. ExPASy TrEMBL
Match: B3TLM2 (Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034691 PE=2 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.7e-80
Identity = 149/159 (93.71%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAID+FT+KKLEDIVPSSHNCDVP VTRTDYQLIDISEDGFVSLLTD+G+TKDDLRL TD
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           E+LLAQ+KDGFAEGKDLVV+VMSAMGEEQIC LKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Lsi08G012480 vs. NCBI nr
Match: XP_008445267.1 (PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP_038884938.1 eukaryotic translation initiation factor 5A-4-like [Benincasa hispida])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRL TD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           ESLLAQ+KDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN
Sbjct: 121 ESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of Lsi08G012480 vs. NCBI nr
Match: XP_004138702.1 (eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN62994.1 hypothetical protein Csa_022421 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 9.3e-83
Identity = 155/160 (96.88%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT KK+EDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRL TD
Sbjct: 61  VAIDIFTGKKVEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           ESLL Q+KDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN
Sbjct: 121 ESLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of Lsi08G012480 vs. NCBI nr
Match: XP_022962181.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_023545516.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo] >KAG6598545.1 Eukaryotic translation initiation factor 5A-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029478.1 Eukaryotic translation initiation factor 5A-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311.6 bits (797), Expect = 3.9e-81
Identity = 152/160 (95.00%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTFPQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRL TD
Sbjct: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           +SLL Q+KDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK+
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160

[Close]

BLAST of Lsi08G012480 vs. NCBI nr
Match: XP_010101033.1 (eukaryotic translation initiation factor 5A-4 [Morus notabilis] >EXB86681.1 Eukaryotic translation initiation factor 5A-4 [Morus notabilis])

HSP 1 Score: 309.3 bits (791), Expect = 1.9e-80
Identity = 150/160 (93.75%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNG+TKDDLRL TD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 161
           E+LL+Q+KDGFAEGKDLVVSVMSAMGEEQIC LKDIGPKN
Sbjct: 121 EALLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of Lsi08G012480 vs. NCBI nr
Match: XP_010908239.1 (eukaryotic translation initiation factor 5A-2 [Elaeis guineensis])

HSP 1 Score: 307.8 bits (787), Expect = 5.6e-80
Identity = 149/159 (93.71%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAID+FT+KKLEDIVPSSHNCDVP VTRTDYQLIDISEDGFVSLLTD+G+TKDDLRL TD
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           E+LLAQ+KDGFAEGKDLVV+VMSAMGEEQIC LKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Lsi08G012480 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 282.7 bits (722), Expect = 1.8e-76
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFTSKKLEDIVPSSHNCDVP V RTDYQLIDISEDG+VSLLTDNGSTKDDL+L  D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LL Q+K GF +GKDLVVSVMSAMGEEQI  LKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]

BLAST of Lsi08G012480 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 282.3 bits (721), Expect = 2.4e-76
Identity = 137/159 (86.16%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKT+PQQAG IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFTSKKLEDIVPSSHNCDVP V R DYQLIDISEDGFVSLLTDNGSTKDDL+L TD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           E+LL Q+K+GF EGKD+VVSVMSAMGEEQ+C LK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]

BLAST of Lsi08G012480 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 257.3 bits (656), Expect = 8.1e-69
Identity = 123/157 (78.34%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVP V R DYQLIDI+EDGFVSLLTD+G TKDDL+L TD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 ESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIG 158
           + L AQ++ GF EGKD+VVSVMS+MGEEQIC +K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]

BLAST of Lsi08G012480 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-55
Identity = 102/127 (80.31%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTD 120
           VAIDIFT+KKLEDIVPSSHNCDVP V R DYQLIDI+EDGFVSLLTD+G TKDDL+L TD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 ESLLAQV 128
           + L AQ+
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:

BLAST of Lsi08G012480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56337	2.0e-80	91.19	Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI...	[more]
Q9AXQ6	2.6e-80	91.19	Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE...	[more]
P24922	4.5e-80	91.19	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69039	5.9e-80	89.94	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69040	5.9e-80	89.94	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI...	[more]

BLAST of Lsi08G012480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BC90	5.3e-84	98.13	Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103488...	[more]
A0A0A0LPT1	4.5e-83	96.88	Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
A0A6J1HCD8	1.9e-81	95.00	Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
W9S3D3	9.4e-81	93.75	Eukaryotic translation initiation factor 5A OS=Morus notabilis OX=981085 GN=L484...	[more]
B3TLM2	2.7e-80	93.71	Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera OX=...	[more]

BLAST of Lsi08G012480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445267.1	1.1e-83	98.13	PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP...	[more]
XP_004138702.1	9.3e-83	96.88	eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN62994.1 hypo...	[more]
XP_022962181.1	3.9e-81	95.00	eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0235...	[more]
XP_010101033.1	1.9e-80	93.75	eukaryotic translation initiation factor 5A-4 [Morus notabilis] >EXB86681.1 Euka...	[more]
XP_010908239.1	5.6e-80	93.71	eukaryotic translation initiation factor 5A-2 [Elaeis guineensis]	[more]

BLAST of Lsi08G012480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	1.8e-76	88.05	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	2.4e-76	86.16	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	8.1e-69	78.34	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	1.8e-55	80.31	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..154 e-value: 1.0E-29 score: 114.7
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 86..154 e-value: 2.4E-27 score: 94.8
None	No IPR available	GENE3D	2.40.50.140		coord: 86..159 e-value: 5.6E-33 score: 114.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..156
None	No IPR available	CDD	cd04468	S1_eIF5A	coord: 86..156 e-value: 3.90509E-29 score: 99.9192
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..157 e-value: 4.5E-65 score: 215.9
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 18..152 e-value: 2.3E-39 score: 132.2
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..156
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 2.8E-43 score: 147.7
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..156
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G012480.1	Lsi08G012480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0006413	translational initiation
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding