Lsi08G012380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G012380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger protein 3-like
Location	chr08: 20839698 .. 20840345 (-)
RNA-Seq Expression	Lsi08G012380
Synteny	Lsi08G012380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCTCAACCTCTCCACCTCCAAAAACGCCGTCGCATAATCAGGAAGAAAACGACGACGAATTAGAGGAAAACCACCACCATCTCCGCCGTGGGATACCGACGGAGGAGCTGAATCTCATGGAAGGCTTGAAAATGGGTTCATCGGAGCCGAGGGTATTTTCGTGTAATTTTTGTCAAAGGAAATTTTATAGCTCACAAGCACTTGGAGGGCATCAAAATGCTCATAAAAGAGAGAGAACGTTGGCTAAAAGAGGCGGTCAACGCTTTCCGGCATTCGGTGGCTACCACCACTATGCGGCGGCGCCGTCTTTTCCACTTCCCGGTGGTCCCAACAACAGATCGCTTGGAATTCAAGTTCACGCGATGGTACATAAACCGTCTCACCACGCGCCGGTTTCTTCCTCTTCGAGGTTTGGAATCCTCTACGGCCGTTCTTACGGTTGGTCTAGAACGCCCATCCATCAACAGCCCGGTATTGGGAAGCTACCGTTGATGAACGCTGGCCATGCGATTAATCATACCACTGGATTTCCGCCACGTGGCTGCAACTCCGTCGGTAGATTCGACTTTGACGTCGTCCGATCAACGGCGGCGACTGCCGACGACACCCACAAAGTACTCGACTTGTCTCTCAAGCTGTAA

mRNA sequence

ATGGAGTCCTCAACCTCTCCACCTCCAAAAACGCCGTCGCATAATCAGGAAGAAAACGACGACGAATTAGAGGAAAACCACCACCATCTCCGCCGTGGGATACCGACGGAGGAGCTGAATCTCATGGAAGGCTTGAAAATGGGTTCATCGGAGCCGAGGGTATTTTCGTGTAATTTTTGTCAAAGGAAATTTTATAGCTCACAAGCACTTGGAGGGCATCAAAATGCTCATAAAAGAGAGAGAACGTTGGCTAAAAGAGGCGGTCAACGCTTTCCGGCATTCGGTGGCTACCACCACTATGCGGCGGCGCCGTCTTTTCCACTTCCCGGTGGTCCCAACAACAGATCGCTTGGAATTCAAGTTCACGCGATGGTACATAAACCGTCTCACCACGCGCCGGTTTCTTCCTCTTCGAGGTTTGGAATCCTCTACGGCCGTTCTTACGGTTGGTCTAGAACGCCCATCCATCAACAGCCCGGTATTGGGAAGCTACCGTTGATGAACGCTGGCCATGCGATTAATCATACCACTGGATTTCCGCCACGTGGCTGCAACTCCGTCGGTAGATTCGACTTTGACGTCGTCCGATCAACGGCGGCGACTGCCGACGACACCCACAAAGTACTCGACTTGTCTCTCAAGCTGTAA

Coding sequence (CDS)

ATGGAGTCCTCAACCTCTCCACCTCCAAAAACGCCGTCGCATAATCAGGAAGAAAACGACGACGAATTAGAGGAAAACCACCACCATCTCCGCCGTGGGATACCGACGGAGGAGCTGAATCTCATGGAAGGCTTGAAAATGGGTTCATCGGAGCCGAGGGTATTTTCGTGTAATTTTTGTCAAAGGAAATTTTATAGCTCACAAGCACTTGGAGGGCATCAAAATGCTCATAAAAGAGAGAGAACGTTGGCTAAAAGAGGCGGTCAACGCTTTCCGGCATTCGGTGGCTACCACCACTATGCGGCGGCGCCGTCTTTTCCACTTCCCGGTGGTCCCAACAACAGATCGCTTGGAATTCAAGTTCACGCGATGGTACATAAACCGTCTCACCACGCGCCGGTTTCTTCCTCTTCGAGGTTTGGAATCCTCTACGGCCGTTCTTACGGTTGGTCTAGAACGCCCATCCATCAACAGCCCGGTATTGGGAAGCTACCGTTGATGAACGCTGGCCATGCGATTAATCATACCACTGGATTTCCGCCACGTGGCTGCAACTCCGTCGGTAGATTCGACTTTGACGTCGTCCGATCAACGGCGGCGACTGCCGACGACACCCACAAAGTACTCGACTTGTCTCTCAAGCTGTAA

Protein sequence

MESSTSPPPKTPSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPLPGGPNNRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGHAINHTTGFPPRGCNSVGRFDFDVVRSTAATADDTHKVLDLSLKL

Homology

[Close]

BLAST of Lsi08G012380 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.5e-26
Identity = 77/176 (43.75%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 3   SSTSPPPKTPSHNQEENDDE--LEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 62
           SS++  P   S NQ   D+E  +  + H L      ++   +      S+E ++FSCN+C
Sbjct: 7   SSSTAFPYQDSLNQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYC 66

Query: 63  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPLPGGPNN-RSLGI 122
           QR FYSSQALGGHQNAHKRERTLAKRG +   +   + H       P  G  NN RSLGI
Sbjct: 67  QRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSPLPFHGQYNNHRSLGI 126

Query: 123 QVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGHAINH 176
           Q H++ HK      +SS + FG  YG+   WSR P  QQP IGK P M+  H  +H
Sbjct: 127 QAHSISHK------LSSYNGFGGHYGQ-INWSRLPFDQQPAIGKFPSMDNFHHHHH 175

[Close]

BLAST of Lsi08G012380 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-23
Identity = 76/176 (43.18%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 16  QEENDDELEENHHHLRRGIPT-EELNLMEGLKMGSS-------------EPRVFSCNFCQ 75
           +++   +LE     L RG  T  ELNL++  K  SS             +PRVFSCN+CQ
Sbjct: 15  KKQGHQDLELGLTLLSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQ 74

Query: 76  RKFYSSQALGGHQNAHKRERTLAKRGG------QRFPA------FGGYHHYAAAPSFPLP 135
           RKFYSSQALGGHQNAHKRERTLAKRG          P+       G    +A+  S PL 
Sbjct: 75  RKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLH 134

Query: 136 GGPNNRS-LGIQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKL 165
           G  NNRS LGIQ H+ +HKPS     ++S              +  IHQ+P IGK+
Sbjct: 135 GSVNNRSTLGIQAHSTIHKPSFLGRQTTSLSHVF---------KQSIHQKPTIGKM 181

[Close]

BLAST of Lsi08G012380 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-16
Identity = 59/133 (44.36%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 14  HNQEENDDELEENHHHLRRGIPTEELN-LMEGLKMGSSEPRVFSCNFCQRKFYSSQALGG 73
           +N   N+ +LE +   L     +E  N   +  +  S   RVFSCN+CQRKFYSSQALGG
Sbjct: 43  NNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGG 102

Query: 74  HQNAHKRERTLAKRGGQR-----FPAFGGYHHYAAAPS------FPLPGGPNN-----RS 130
           HQNAHKRERTLAKR  +      FP  G   +YAAA +       PL G  N      R+
Sbjct: 103 HQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRT 162

[Close]

BLAST of Lsi08G012380 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 50  SEPRVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPLP 109
           + PRVFSCN+C+RKFYSSQALGGHQNAHKRERT+AKR       FG +H          P
Sbjct: 54  ANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHR---------P 113

Query: 110 GGPNNRSLGIQVHAMVHKPSHHAPVSSSSRF 141
               + SLG+Q H+ +   +   P    SRF
Sbjct: 114 YTYTSSSLGMQAHSGLLHHTLSQPQPLVSRF 135

[Close]

BLAST of Lsi08G012380 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-12
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 51 EPRVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRF 92
          +PRVFSCN+CQRKFYSSQALGGHQNAHK ERTLAK+  + F
Sbjct: 48 QPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELF 88

[Close]

BLAST of Lsi08G012380 vs. ExPASy TrEMBL
Match: A0A0A0LM45 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382580 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.5e-107
Identity = 195/224 (87.05%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MESSTSPPPKTPSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 60
           MESST+PPPKT S+NQE+NDDELE+NHHHLRR IP EELNL+EGLKMGSSEPRVFSCNFC
Sbjct: 1   MESSTAPPPKTASYNQEQNDDELEDNHHHLRREIPAEELNLIEGLKMGSSEPRVFSCNFC 60

Query: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAA--APSFPLPGGP-----N 120
           QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFG YHHYAA  APSFPLPG P     N
Sbjct: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGAYHHYAAAVAPSFPLPGSPNNNNNN 120

Query: 121 NRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRSY--GWSRTPIHQQPGIGKLPLMNAGH 180
           NRSLGIQVHAMVHKPSHH P SS+SRFG+ YGRSY  GWSRTPIHQQPG+GKLPLMNAGH
Sbjct: 121 NRSLGIQVHAMVHKPSHHPPASSNSRFGVHYGRSYGGGWSRTPIHQQPGVGKLPLMNAGH 180

Query: 181 AINHTTGFPPRGCNSVGRFDFDVVRSTAATADDTHKVLDLSLKL 216
            INHTTGFPPRGC+SVGRFDFDVVRST A ADDTHKVLDLSLKL
Sbjct: 181 PINHTTGFPPRGCSSVGRFDFDVVRSTTAAADDTHKVLDLSLKL 224

[Close]

BLAST of Lsi08G012380 vs. ExPASy TrEMBL
Match: A0A5A7VG79 (Zinc finger protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002100 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.5e-102
Identity = 192/223 (86.10%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MESSTSPPPKTPSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 60
           MESST+  PKT S+NQE+ND +LE+NHHHLRR IP EELNL+EGLKM SSEPRVFSCNFC
Sbjct: 1   MESSTA--PKTASYNQEQNDGDLEDNHHHLRREIPAEELNLIEGLKMASSEPRVFSCNFC 60

Query: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHY---AAAPSFPLPGGP----N 120
           QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHY   AAAPSF LPGGP    N
Sbjct: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAVAAAPSFLLPGGPNNNNN 120

Query: 121 NRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRS-YGWSRTPIHQQPGIGKLPLMNAGHA 180
           NRSLGIQVHAMVHKPSHH PVSS+SRFG+ YGRS  GWSRTPIHQQPG+GKLPLMNAGH 
Sbjct: 121 NRSLGIQVHAMVHKPSHHPPVSSNSRFGVHYGRSDGGWSRTPIHQQPGVGKLPLMNAGHP 180

Query: 181 INHTTGFPPRGCNSVGRFDFDVVRSTAATADDTHKVLDLSLKL 216
           INHTTGFPPRGC+SVGRFDFDVVRSTAA ADDTHKVLDLSLKL
Sbjct: 181 INHTTGFPPRGCSSVGRFDFDVVRSTAAAADDTHKVLDLSLKL 221

[Close]

BLAST of Lsi08G012380 vs. ExPASy TrEMBL
Match: A0A1S3BC89 (zinc finger protein 3-like OS=Cucumis melo OX=3656 GN=LOC103488342 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.5e-102
Identity = 192/223 (86.10%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MESSTSPPPKTPSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 60
           MESST+  PKT S+NQE+ND +LE+NHHHLRR IP EELNL+EGLKM SSEPRVFSCNFC
Sbjct: 1   MESSTA--PKTASYNQEQNDGDLEDNHHHLRREIPAEELNLIEGLKMASSEPRVFSCNFC 60

Query: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHY---AAAPSFPLPGGP----N 120
           QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHY   AAAPSF LPGGP    N
Sbjct: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAVAAAPSFLLPGGPNNNNN 120

Query: 121 NRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRS-YGWSRTPIHQQPGIGKLPLMNAGHA 180
           NRSLGIQVHAMVHKPSHH PVSS+SRFG+ YGRS  GWSRTPIHQQPG+GKLPLMNAGH 
Sbjct: 121 NRSLGIQVHAMVHKPSHHPPVSSNSRFGVHYGRSDGGWSRTPIHQQPGVGKLPLMNAGHP 180

Query: 181 INHTTGFPPRGCNSVGRFDFDVVRSTAATADDTHKVLDLSLKL 216
           INHTTGFPPRGC+SVGRFDFDVVRSTAA ADDTHKVLDLSLKL
Sbjct: 181 INHTTGFPPRGCSSVGRFDFDVVRSTAAAADDTHKVLDLSLKL 221

[Close]

BLAST of Lsi08G012380 vs. ExPASy TrEMBL
Match: A0A6J1K332 (zinc finger protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111491949 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.9e-69
Identity = 150/232 (64.66%), Postives = 169/232 (72.84%), Query Frame = 0


Query: 1   MESSTS-PPPKTPSHNQEENDDEL-------EENHHHLRRGIPTEELNLMEGLKMGSSEP 60
           MESST+  PPK PS NQE++DDEL       ++NHHHLR G+P EELNL++GLKMG  E 
Sbjct: 1   MESSTTETPPKPPSQNQEQHDDELQKGFAEEDDNHHHLRGGVPAEELNLIDGLKMGLPER 60

Query: 61  RVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYA-AAPSFPLPGG 120
           R+FSCNFC+RKFYSSQALGGHQNAHKRERTLAKRGGQR PAFGGYHHYA AAPS      
Sbjct: 61  RLFSCNFCRRKFYSSQALGGHQNAHKRERTLAKRGGQRPPAFGGYHHYASAAPS------ 120

Query: 121 PNNRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGH 180
              RS+GIQVHAMVHKP HHAP      FGI+    YGWSRTPIHQQPG+GKLP+MNAGH
Sbjct: 121 ---RSIGIQVHAMVHKPPHHAPA-----FGII----YGWSRTPIHQQPGVGKLPVMNAGH 180

Query: 181 AINHTTGFPPRGCNSVGRFDFDVVRSTAA--------TADDTHKVLDLSLKL 216
           AINHT+           R +FDV RSTA           ++ HKV+DLSLKL
Sbjct: 181 AINHTS----------SRMNFDVERSTAGGGVGLNNKQEEERHKVVDLSLKL 204

[Close]

BLAST of Lsi08G012380 vs. ExPASy TrEMBL
Match: A0A6J1GJK2 (zinc finger protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454443 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.1e-55
Identity = 134/226 (59.29%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 1   MESSTSPPPKTPSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 60
           MESS    P  P    ++   E ++   +LRRGIP EELNL+  LKMGS EPRVFSCNFC
Sbjct: 1   MESSAVDTP--PRLQLQKGFGEEDDGDKYLRRGIPAEELNLIGDLKMGSIEPRVFSCNFC 60

Query: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHY---AAAPSFPLPGGPNNRSL 120
           +RKFYSSQALGGHQNAHKRERTLAKR        GGYHHY   A AP FP   GP NRSL
Sbjct: 61  RRKFYSSQALGGHQNAHKRERTLAKR--------GGYHHYTAAATAPFFPFQTGP-NRSL 120

Query: 121 GIQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGHAINHTT 180
           GIQ+HAMVHKP H+  VSS          S+GWSR PIHQQPGIGKLP +N       T 
Sbjct: 121 GIQLHAMVHKPPHYTAVSS----------SHGWSRIPIHQQPGIGKLPPIN-------TH 180

Query: 181 GFPPRGCNSVGRFDFDVVRSTAATA--------DDTHKVLDLSLKL 216
             PP G N+VGRF+ D+ RSTAA          D+THKVLDLSLKL
Sbjct: 181 RSPPHGFNTVGRFNLDMRRSTAAAGGVHFDNKQDETHKVLDLSLKL 198

[Close]

BLAST of Lsi08G012380 vs. NCBI nr
Match: XP_038886144.1 (zinc finger protein 3-like [Benincasa hispida])

HSP 1 Score: 418.3 bits (1074), Expect = 4.0e-113
Identity = 205/217 (94.47%), Postives = 208/217 (95.85%), Query Frame = 0


Query: 1   MESSTSPPPKT-PSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNF 60
           MESSTSPPPKT PSHNQE+NDDELEENHHHLR GIP EELNL+EGLKMGSSEPRVFSCNF
Sbjct: 1   MESSTSPPPKTPPSHNQEQNDDELEENHHHLRLGIPAEELNLIEGLKMGSSEPRVFSCNF 60

Query: 61  CQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPLPGGP-NNRSLG 120
           CQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFP PGGP NNRSLG
Sbjct: 61  CQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPHPGGPNNNRSLG 120

Query: 121 IQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGHAINHTTG 180
           IQVHAMVHKPSHHAPVSSSSR+GILY RSYGWSRTPIHQQPGIGKL LMNAGHAINHT G
Sbjct: 121 IQVHAMVHKPSHHAPVSSSSRYGILYDRSYGWSRTPIHQQPGIGKLHLMNAGHAINHTDG 180

Query: 181 FPPRGCNSVGRFDFDVVRSTAATADDTHKVLDLSLKL 216
           FPPRGCNSVGRFDFDVVRSTAA ADDTHKVLDLSLKL
Sbjct: 181 FPPRGCNSVGRFDFDVVRSTAAAADDTHKVLDLSLKL 217

[Close]

BLAST of Lsi08G012380 vs. NCBI nr
Match: XP_011649844.1 (zinc finger protein 3 [Cucumis sativus] >KGN62985.1 hypothetical protein Csa_021975 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 7.3e-107
Identity = 195/224 (87.05%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MESSTSPPPKTPSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 60
           MESST+PPPKT S+NQE+NDDELE+NHHHLRR IP EELNL+EGLKMGSSEPRVFSCNFC
Sbjct: 1   MESSTAPPPKTASYNQEQNDDELEDNHHHLRREIPAEELNLIEGLKMGSSEPRVFSCNFC 60

Query: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAA--APSFPLPGGP-----N 120
           QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFG YHHYAA  APSFPLPG P     N
Sbjct: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGAYHHYAAAVAPSFPLPGSPNNNNNN 120

Query: 121 NRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRSY--GWSRTPIHQQPGIGKLPLMNAGH 180
           NRSLGIQVHAMVHKPSHH P SS+SRFG+ YGRSY  GWSRTPIHQQPG+GKLPLMNAGH
Sbjct: 121 NRSLGIQVHAMVHKPSHHPPASSNSRFGVHYGRSYGGGWSRTPIHQQPGVGKLPLMNAGH 180

Query: 181 AINHTTGFPPRGCNSVGRFDFDVVRSTAATADDTHKVLDLSLKL 216
            INHTTGFPPRGC+SVGRFDFDVVRST A ADDTHKVLDLSLKL
Sbjct: 181 PINHTTGFPPRGCSSVGRFDFDVVRSTTAAADDTHKVLDLSLKL 224

[Close]

BLAST of Lsi08G012380 vs. NCBI nr
Match: XP_008445256.1 (PREDICTED: zinc finger protein 3-like [Cucumis melo] >KAA0064895.1 zinc finger protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 382.1 bits (980), Expect = 3.2e-102
Identity = 192/223 (86.10%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MESSTSPPPKTPSHNQEENDDELEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 60
           MESST+  PKT S+NQE+ND +LE+NHHHLRR IP EELNL+EGLKM SSEPRVFSCNFC
Sbjct: 1   MESSTA--PKTASYNQEQNDGDLEDNHHHLRREIPAEELNLIEGLKMASSEPRVFSCNFC 60

Query: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHY---AAAPSFPLPGGP----N 120
           QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHY   AAAPSF LPGGP    N
Sbjct: 61  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAVAAAPSFLLPGGPNNNNN 120

Query: 121 NRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRS-YGWSRTPIHQQPGIGKLPLMNAGHA 180
           NRSLGIQVHAMVHKPSHH PVSS+SRFG+ YGRS  GWSRTPIHQQPG+GKLPLMNAGH 
Sbjct: 121 NRSLGIQVHAMVHKPSHHPPVSSNSRFGVHYGRSDGGWSRTPIHQQPGVGKLPLMNAGHP 180

Query: 181 INHTTGFPPRGCNSVGRFDFDVVRSTAATADDTHKVLDLSLKL 216
           INHTTGFPPRGC+SVGRFDFDVVRSTAA ADDTHKVLDLSLKL
Sbjct: 181 INHTTGFPPRGCSSVGRFDFDVVRSTAAAADDTHKVLDLSLKL 221

[Close]

BLAST of Lsi08G012380 vs. NCBI nr
Match: XP_023546670.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.6 bits (706), Expect = 1.9e-70
Identity = 149/229 (65.07%), Postives = 167/229 (72.93%), Query Frame = 0


Query: 1   MESSTS-PPPKTPSHNQEENDDEL-----EENHHHLRRGIPTEELNLMEGLKMGSSEPRV 60
           MESST+  PPK PS N E++DDEL     ++NHH+LRRG+P EELNL++GLKMG  EPRV
Sbjct: 1   MESSTTETPPKPPSQNHEQHDDELQKGFADDNHHYLRRGVPAEELNLIDGLKMGLPEPRV 60

Query: 61  FSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPLPGGPNN 120
           FSCNFC+RKFYSSQALGGHQNAHKRER LAKRGGQR PAFGGYHHYA+A  F        
Sbjct: 61  FSCNFCRRKFYSSQALGGHQNAHKRERALAKRGGQRLPAFGGYHHYASAAPF-------- 120

Query: 121 RSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGHAIN 180
           RS+GIQVHAMVHKP HHAP      FGIL    YGWSRTPIHQ+P +GKLP+MNAGHAIN
Sbjct: 121 RSIGIQVHAMVHKPPHHAPA-----FGIL----YGWSRTPIHQRPDVGKLPVMNAGHAIN 180

Query: 181 HTTGFPPRGCNSVGRFDFDVVRSTAA--------TADDTHKVLDLSLKL 216
           HT+          GR DFDV RSTA           ++ HK LDLSLKL
Sbjct: 181 HTS----------GRMDFDVERSTAGGGVGLKNKQEEERHKALDLSLKL 202

[Close]

BLAST of Lsi08G012380 vs. NCBI nr
Match: XP_022996822.1 (zinc finger protein 3-like [Cucurbita maxima])

HSP 1 Score: 271.6 bits (693), Expect = 6.0e-69
Identity = 150/232 (64.66%), Postives = 169/232 (72.84%), Query Frame = 0


Query: 1   MESSTS-PPPKTPSHNQEENDDEL-------EENHHHLRRGIPTEELNLMEGLKMGSSEP 60
           MESST+  PPK PS NQE++DDEL       ++NHHHLR G+P EELNL++GLKMG  E 
Sbjct: 1   MESSTTETPPKPPSQNQEQHDDELQKGFAEEDDNHHHLRGGVPAEELNLIDGLKMGLPER 60

Query: 61  RVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYA-AAPSFPLPGG 120
           R+FSCNFC+RKFYSSQALGGHQNAHKRERTLAKRGGQR PAFGGYHHYA AAPS      
Sbjct: 61  RLFSCNFCRRKFYSSQALGGHQNAHKRERTLAKRGGQRPPAFGGYHHYASAAPS------ 120

Query: 121 PNNRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGH 180
              RS+GIQVHAMVHKP HHAP      FGI+    YGWSRTPIHQQPG+GKLP+MNAGH
Sbjct: 121 ---RSIGIQVHAMVHKPPHHAPA-----FGII----YGWSRTPIHQQPGVGKLPVMNAGH 180

Query: 181 AINHTTGFPPRGCNSVGRFDFDVVRSTAA--------TADDTHKVLDLSLKL 216
           AINHT+           R +FDV RSTA           ++ HKV+DLSLKL
Sbjct: 181 AINHTS----------SRMNFDVERSTAGGGVGLNNKQEEERHKVVDLSLKL 204

[Close]

BLAST of Lsi08G012380 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-30
Identity = 98/262 (37.40%), Postives = 130/262 (49.62%), Query Frame = 0


Query: 1   MESSTSPPPKTPSHN------QEENDDELEENHHHLRRGIP-----------TEELNLME 60
           ++ S SP     ++N      QEE+D + +E    ++  +             +ELNL++
Sbjct: 23  LQFSDSPKLSLENYNIDTVAAQEEDDHDQKEGVEGIKLDLMLAGYDSSQPQLNQELNLLD 82

Query: 61  GLKMG----------SSEPRVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPA 120
            L+ G          S+E ++FSCN+CQR FYSSQALGGHQNAHKRERTLAKRG +   A
Sbjct: 83  CLETGVVTPSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMASA 142

Query: 121 FGGYHHYAAAPSFPLPGGPNNRSLGIQVHAMVHKPSHHAPVSSSSRFGILYGRSYG---W 180
               H Y  AP  P  G  +NR+LGIQ H+M HKPS +           +YG  YG   W
Sbjct: 143 AAFGHPYGFAP-VPFHGQYSNRTLGIQAHSMSHKPSSYN----------VYGGEYGQINW 202

Query: 181 SRTPIHQQPGIGKLPLMNAGHAINHTTGFPP---RGCNSVGRFDFDVVRSTAATA----- 216
           SR P+ QQP I KL      H  +H     P     C ++GRFD   +     T+     
Sbjct: 203 SRIPLVQQPAIAKL-TSTENHYNHHQMMIAPPLTSTCENIGRFDVGRIPVEFPTSELWQR 262

[Close]

BLAST of Lsi08G012380 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 )

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-27
Identity = 77/176 (43.75%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 3   SSTSPPPKTPSHNQEENDDE--LEENHHHLRRGIPTEELNLMEGLKMGSSEPRVFSCNFC 62
           SS++  P   S NQ   D+E  +  + H L      ++   +      S+E ++FSCN+C
Sbjct: 7   SSSTAFPYQDSLNQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYC 66

Query: 63  QRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPLPGGPNN-RSLGI 122
           QR FYSSQALGGHQNAHKRERTLAKRG +   +   + H       P  G  NN RSLGI
Sbjct: 67  QRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSPLPFHGQYNNHRSLGI 126

Query: 123 QVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKLPLMNAGHAINH 176
           Q H++ HK      +SS + FG  YG+   WSR P  QQP IGK P M+  H  +H
Sbjct: 127 QAHSISHK------LSSYNGFGGHYGQ-INWSRLPFDQQPAIGKFPSMDNFHHHHH 175

[Close]

BLAST of Lsi08G012380 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-24
Identity = 76/176 (43.18%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 16  QEENDDELEENHHHLRRGIPT-EELNLMEGLKMGSS-------------EPRVFSCNFCQ 75
           +++   +LE     L RG  T  ELNL++  K  SS             +PRVFSCN+CQ
Sbjct: 15  KKQGHQDLELGLTLLSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQ 74

Query: 76  RKFYSSQALGGHQNAHKRERTLAKRGG------QRFPA------FGGYHHYAAAPSFPLP 135
           RKFYSSQALGGHQNAHKRERTLAKRG          P+       G    +A+  S PL 
Sbjct: 75  RKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLH 134

Query: 136 GGPNNRS-LGIQVHAMVHKPSHHAPVSSSSRFGILYGRSYGWSRTPIHQQPGIGKL 165
           G  NNRS LGIQ H+ +HKPS     ++S              +  IHQ+P IGK+
Sbjct: 135 GSVNNRSTLGIQAHSTIHKPSFLGRQTTSLSHVF---------KQSIHQKPTIGKM 181

[Close]

BLAST of Lsi08G012380 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-17
Identity = 59/133 (44.36%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 14  HNQEENDDELEENHHHLRRGIPTEELN-LMEGLKMGSSEPRVFSCNFCQRKFYSSQALGG 73
           +N   N+ +LE +   L     +E  N   +  +  S   RVFSCN+CQRKFYSSQALGG
Sbjct: 43  NNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGG 102

Query: 74  HQNAHKRERTLAKRGGQR-----FPAFGGYHHYAAAPS------FPLPGGPNN-----RS 130
           HQNAHKRERTLAKR  +      FP  G   +YAAA +       PL G  N      R+
Sbjct: 103 HQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRT 162

[Close]

BLAST of Lsi08G012380 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-15
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 50  SEPRVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPLP 109
           + PRVFSCN+C+RKFYSSQALGGHQNAHKRERT+AKR       FG +H          P
Sbjct: 54  ANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHR---------P 113

Query: 110 GGPNNRSLGIQVHAMVHKPSHHAPVSSSSRF 141
               + SLG+Q H+ +   +   P    SRF
Sbjct: 114 YTYTSSSLGMQAHSGLLHHTLSQPQPLVSRF 135

The following BLAST results are available for this feature:

BLAST of Lsi08G012380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39262	6.5e-26	43.75	Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1	[more]
Q42485	3.0e-23	43.18	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]
Q39263	8.0e-16	44.36	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q39266	1.5e-14	49.45	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]
Q39261	1.4e-12	80.49	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]

BLAST of Lsi08G012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM45	3.5e-107	87.05	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382580 P...	[more]
A0A5A7VG79	1.5e-102	86.10	Zinc finger protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3BC89	1.5e-102	86.10	zinc finger protein 3-like OS=Cucumis melo OX=3656 GN=LOC103488342 PE=4 SV=1	[more]
A0A6J1K332	2.9e-69	64.66	zinc finger protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111491949 PE=4 SV=1	[more]
A0A6J1GJK2	3.1e-55	59.29	zinc finger protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454443 PE=4 SV...	[more]

BLAST of Lsi08G012380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886144.1	4.0e-113	94.47	zinc finger protein 3-like [Benincasa hispida]	[more]
XP_011649844.1	7.3e-107	87.05	zinc finger protein 3 [Cucumis sativus] >KGN62985.1 hypothetical protein Csa_021...	[more]
XP_008445256.1	3.2e-102	86.10	PREDICTED: zinc finger protein 3-like [Cucumis melo] >KAA0064895.1 zinc finger p...	[more]
XP_023546670.1	1.9e-70	65.07	zinc finger protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996822.1	6.0e-69	64.66	zinc finger protein 3-like [Cucurbita maxima]	[more]

BLAST of Lsi08G012380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10970.1	5.9e-30	37.40	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G25160.1	4.6e-27	43.75	zinc finger protein 3	[more]
AT1G80730.1	2.2e-24	43.18	zinc-finger protein 1	[more]
AT1G66140.1	5.7e-17	44.36	zinc finger protein 4	[more]
AT1G24625.1	1.1e-15	49.45	zinc finger protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 37..92 e-value: 5.2E-6 score: 28.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..35
None	No IPR available	PANTHER	PTHR47287:SF1	ZINC FINGER PROTEIN 1-LIKE	coord: 21..215
IPR044246	Zinc finger protein 3-like	PANTHER	PTHR47287	C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN	coord: 21..215
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 57..77
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 55..82 score: 11.239817
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 52..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G012380.1	Lsi08G012380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009788	negative regulation of abscisic acid-activated signaling pathway