Lsi08G012280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G012280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Stress induced protein
Location	chr08: 20735277 .. 20735738 (+)
RNA-Seq Expression	Lsi08G012280
Synteny	Lsi08G012280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTTCTTCCGCCATTAATGGAACCTTGCGATCGGAGGAGATCAGAGGGACTGATCGGATCGAGGAAGGAGATGATCATGATGAAGTAGGAGTTTCGTATTCTTCCTGTGGATGTTTCTTTGGATTCGGATCGAGATTGACTCGGAGCGGCAGTGTTCGATGCGGATATCTACCTCTGCAACCGCATCGGAAAGAGGAAGAAGTGAAGCAGAGTTGGATGATGAAGAAGGTGAAGAGATTGAACGAGATTATAAAAGCTATGGCAGGGCGGAAATGGAGAAGTTTGATTAATGGAATAATGAACAAGAGACGGAGTGTGAGGTTTCAGTACGATCCGAGGAGTTACGCTCTGAATTTTGACGAAGGGATCAGGGAAGAAGGACGTCATGTTCTCCGGCCGCCGTCTGCATCTCCGATCGGATTGGGGATTGGAATGAACAGAACCCAAATATGA

mRNA sequence

ATGGCTTCTTCTTCTTCCGCCATTAATGGAACCTTGCGATCGGAGGAGATCAGAGGGACTGATCGGATCGAGGAAGGAGATGATCATGATGAAGTAGGAGTTTCGTATTCTTCCTGTGGATGTTTCTTTGGATTCGGATCGAGATTGACTCGGAGCGGCAGTGTTCGATGCGGATATCTACCTCTGCAACCGCATCGGAAAGAGGAAGAAGTGAAGCAGAGTTGGATGATGAAGAAGGTGAAGAGATTGAACGAGATTATAAAAGCTATGGCAGGGCGGAAATGGAGAAGTTTGATTAATGGAATAATGAACAAGAGACGGAGTGTGAGGTTTCAGTACGATCCGAGGAGTTACGCTCTGAATTTTGACGAAGGGATCAGGGAAGAAGGACGTCATGTTCTCCGGCCGCCGTCTGCATCTCCGATCGGATTGGGGATTGGAATGAACAGAACCCAAATATGA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCCGCCATTAATGGAACCTTGCGATCGGAGGAGATCAGAGGGACTGATCGGATCGAGGAAGGAGATGATCATGATGAAGTAGGAGTTTCGTATTCTTCCTGTGGATGTTTCTTTGGATTCGGATCGAGATTGACTCGGAGCGGCAGTGTTCGATGCGGATATCTACCTCTGCAACCGCATCGGAAAGAGGAAGAAGTGAAGCAGAGTTGGATGATGAAGAAGGTGAAGAGATTGAACGAGATTATAAAAGCTATGGCAGGGCGGAAATGGAGAAGTTTGATTAATGGAATAATGAACAAGAGACGGAGTGTGAGGTTTCAGTACGATCCGAGGAGTTACGCTCTGAATTTTGACGAAGGGATCAGGGAAGAAGGACGTCATGTTCTCCGGCCGCCGTCTGCATCTCCGATCGGATTGGGGATTGGAATGAACAGAACCCAAATATGA

Protein sequence

MASSSSAINGTLRSEEIRGTDRIEEGDDHDEVGVSYSSCGCFFGFGSRLTRSGSVRCGYLPLQPHRKEEEVKQSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPRSYALNFDEGIREEGRHVLRPPSASPIGLGIGMNRTQI

Homology

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BLAST of Lsi08G012280 vs. ExPASy TrEMBL
Match: A0A5A7VG87 (Stress induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002220 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-51
Identity = 120/156 (76.92%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 2   ASSSSAINGTLRSEEIRGTDRIEEGDD--HDEV-GVSYSSCGCFFGFGSRLTRSGSVRCG 61
           +SSSSAI+GTLRSE+    DRIEEG+D   +EV G SYSSCGCFFGFGSRL+R   VR G
Sbjct: 8   SSSSSAIDGTLRSED----DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR---VRGG 67

Query: 62  YLPLQPHRKEEEVK-QSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPRS 121
           YLPLQ +RK EEVK QSWMM+KVKRLNEIIKAMAGRKWRSLINGI+NKRRSVRFQYDPRS
Sbjct: 68  YLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRFQYDPRS 127

Query: 122 YALNFDEGIREEGRHVLRPPSASPIGLGIGMNRTQI 154
           YALNFDEG+ EEGR      S  PIGLGIGMNR QI
Sbjct: 128 YALNFDEGMEEEGRR-----SLQPIGLGIGMNRNQI 151

[Close]

BLAST of Lsi08G012280 vs. ExPASy TrEMBL
Match: A0A1S3BC68 (uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-51
Identity = 120/156 (76.92%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 2   ASSSSAINGTLRSEEIRGTDRIEEGDD--HDEV-GVSYSSCGCFFGFGSRLTRSGSVRCG 61
           +SSSSAI+GTLRSE+    DRIEEG+D   +EV G SYSSCGCFFGFGSRL+R   VR G
Sbjct: 8   SSSSSAIDGTLRSED----DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR---VRGG 67

Query: 62  YLPLQPHRKEEEVK-QSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPRS 121
           YLPLQ +RK EEVK QSWMM+KVKRLNEIIKAMAGRKWRSLINGI+NKRRSVRFQYDPRS
Sbjct: 68  YLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRFQYDPRS 127

Query: 122 YALNFDEGIREEGRHVLRPPSASPIGLGIGMNRTQI 154
           YALNFDEG+ EEGR      S  PIGLGIGMNR QI
Sbjct: 128 YALNFDEGMEEEGRR-----SLQPIGLGIGMNRNQI 151

[Close]

BLAST of Lsi08G012280 vs. ExPASy TrEMBL
Match: A0A6J1K5B0 (uncharacterized protein LOC111492425 OS=Cucurbita maxima OX=3661 GN=LOC111492425 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.1e-49
Identity = 111/151 (73.51%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MASSSSAINGTLRSEEIRGTDRIEEGDDH----DEVGVSYSSCGCFFGFGSRLTRSGSVR 60
           MASS++  +   RSEEIR  DRIEEG+D     DEVGVSYSSCGCFFGFGSRL+RS SVR
Sbjct: 1   MASSATIEDEISRSEEIRAPDRIEEGNDRDLDLDEVGVSYSSCGCFFGFGSRLSRSSSVR 60

Query: 61  CGYLPLQPHRKEEEVKQSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPR 120
           C YL L   R+ EEVKQSWMMKKVKR  +IIKAMAGRKWRS INGI+NKRRSVRFQYDPR
Sbjct: 61  CRYLLL---RENEEVKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVRFQYDPR 120

Query: 121 SYALNFDEGIREE----GRHVLRPPSASPIG 144
           SYALNFDEG+ EE    GRH  R P ASPIG
Sbjct: 121 SYALNFDEGMGEEEGGGGRHGFRQPFASPIG 148

[Close]

BLAST of Lsi08G012280 vs. ExPASy TrEMBL
Match: A0A0A0LPP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382480 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.3e-49
Identity = 115/155 (74.19%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 2   ASSSSAINGTLRSEEIRGTDRIEEGDD-HDEVGVSYSSCGCFFGFGSRLTRSGSVRCGYL 61
           +SSSS I+GTLRS         EEG+D  D+VGVSYSSCGCFFGF SRL+R   VR GYL
Sbjct: 8   SSSSSPIDGTLRS---------EEGEDLRDQVGVSYSSCGCFFGFRSRLSR---VRGGYL 67

Query: 62  PLQPHRKEEEVK--QSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPRSY 121
           PLQ +RK EEVK  QSWMM KVKRLNEIIKA+AGRKWRSLINGI+NKRRSVRFQYDPRSY
Sbjct: 68  PLQSNRKTEEVKQHQSWMMTKVKRLNEIIKAVAGRKWRSLINGIINKRRSVRFQYDPRSY 127

Query: 122 ALNFDEGIREEGRHVLRPPSASPIGLGIGMNRTQI 154
           ALNFDEGI EE RH L      PIGLGIGMNR QI
Sbjct: 128 ALNFDEGIEEEARHTLH-----PIGLGIGMNRNQI 145

[Close]

BLAST of Lsi08G012280 vs. ExPASy TrEMBL
Match: A0A6J1BV09 (uncharacterized protein LOC111004972 OS=Momordica charantia OX=3673 GN=LOC111004972 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.9e-49
Identity = 112/159 (70.44%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MASSSSAINGTLRSEEIRGTDRIEEGDDHDEVGV-SYSSCGCFFGFGSRLTRSG-SVRCG 60
           MAS SS+ + +   E +R TDRIEE DD  EVGV SYSSCGCFFGFGSR  RS   VRC 
Sbjct: 1   MASYSSSTSSSSIDETLR-TDRIEEDDDR-EVGVSSYSSCGCFFGFGSRQARSSDGVRCR 60

Query: 61  YLPLQPHRKEEEVKQSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPRSY 120
           YLPLQPH  E++VKQSWMMKKVKR  EIIKA+AGRKWRS I+GI++K+RSVRFQYDPRSY
Sbjct: 61  YLPLQPH--EDQVKQSWMMKKVKRFKEIIKAVAGRKWRSFISGIISKKRSVRFQYDPRSY 120

Query: 121 ALNFDEGIREE----GRHVLRPPSASPIGLGIGMNRTQI 154
           ALNFDEG  E+    GRH  R PSA+PIGLGIGMNR+Q+
Sbjct: 121 ALNFDEGSGEDGGGSGRHGFRAPSATPIGLGIGMNRSQV 155

[Close]

BLAST of Lsi08G012280 vs. NCBI nr
Match: KAG7029494.1 (hypothetical protein SDJN02_07833, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.5 bits (558), Expect = 1.9e-53
Identity = 120/163 (73.62%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 1   MASSSSAINGTLRSEEIRGTDRIEEGDDH------DEVGVSYSSCGCFFGFGSRLTRSGS 60
           MASSS+  +   RSEEIR  DRIEEG+D       DEVGVSYSSCGCFFGFGSRL+RS S
Sbjct: 1   MASSSTIDDEISRSEEIRAPDRIEEGNDRDRDLDLDEVGVSYSSCGCFFGFGSRLSRSSS 60

Query: 61  VRCGYLPLQPHRKEEEVKQSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYD 120
           VRC YL L   R+ EEVKQSWMMKKVKR  +IIKAMAGRKWRS INGI+NKRRSVRFQYD
Sbjct: 61  VRCQYLLL---RENEEVKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVRFQYD 120

Query: 121 PRSYALNFDEGIREE----GRHVLRPPSASPIGLGIGMNRTQI 154
           PRSYALNFDEGI EE    GRH  R P ASPIGLG GMN +QI
Sbjct: 121 PRSYALNFDEGIGEEEGRGGRHGFRQPFASPIGLGTGMNTSQI 160

[Close]

BLAST of Lsi08G012280 vs. NCBI nr
Match: XP_008445245.1 (PREDICTED: uncharacterized protein LOC103488331 [Cucumis melo] >KAA0064905.1 stress induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 3.1e-51
Identity = 120/156 (76.92%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 2   ASSSSAINGTLRSEEIRGTDRIEEGDD--HDEV-GVSYSSCGCFFGFGSRLTRSGSVRCG 61
           +SSSSAI+GTLRSE+    DRIEEG+D   +EV G SYSSCGCFFGFGSRL+R   VR G
Sbjct: 8   SSSSSAIDGTLRSED----DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR---VRGG 67

Query: 62  YLPLQPHRKEEEVK-QSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPRS 121
           YLPLQ +RK EEVK QSWMM+KVKRLNEIIKAMAGRKWRSLINGI+NKRRSVRFQYDPRS
Sbjct: 68  YLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRFQYDPRS 127

Query: 122 YALNFDEGIREEGRHVLRPPSASPIGLGIGMNRTQI 154
           YALNFDEG+ EEGR      S  PIGLGIGMNR QI
Sbjct: 128 YALNFDEGMEEEGRR-----SLQPIGLGIGMNRNQI 151

[Close]

BLAST of Lsi08G012280 vs. NCBI nr
Match: KAG6598556.1 (hypothetical protein SDJN03_08334, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 119/193 (61.66%), Postives = 128/193 (66.32%), Query Frame = 0


Query: 1   MASSSSAINGTLRSEEIRGTDRIEEGDDH------DEVGVSYSSCGCFFGFGSRLTRSGS 60
           MASSS+  +   RSEEIR  DRIEEG+D       DEVGVSYSSCGCFFGFGSRL+RS S
Sbjct: 1   MASSSTIDDEISRSEEIRAPDRIEEGNDRDRDLDLDEVGVSYSSCGCFFGFGSRLSRSSS 60

Query: 61  VRCGYLPLQPHRKEEEVKQSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYD 120
           VRC YL L   R+ EEVKQSWMMKKVKR  +IIKAMAGRKWRS INGI+NKRRSVRFQYD
Sbjct: 61  VRCQYLLL---RENEEVKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVRFQYD 120

Query: 121 PRSYALNFDEGIREE----------------------------------GRHVLRPPSAS 154
           PRSYALNFDEGI EE                                  GRH  R P AS
Sbjct: 121 PRSYALNFDEGIGEEEGRVNKRRSVRFQYDPRSYALNFDEGIGEEEGGGGRHGFRQPFAS 180

[Close]

BLAST of Lsi08G012280 vs. NCBI nr
Match: XP_022997532.1 (uncharacterized protein LOC111492425 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 8.4e-49
Identity = 111/151 (73.51%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MASSSSAINGTLRSEEIRGTDRIEEGDDH----DEVGVSYSSCGCFFGFGSRLTRSGSVR 60
           MASS++  +   RSEEIR  DRIEEG+D     DEVGVSYSSCGCFFGFGSRL+RS SVR
Sbjct: 1   MASSATIEDEISRSEEIRAPDRIEEGNDRDLDLDEVGVSYSSCGCFFGFGSRLSRSSSVR 60

Query: 61  CGYLPLQPHRKEEEVKQSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPR 120
           C YL L   R+ EEVKQSWMMKKVKR  +IIKAMAGRKWRS INGI+NKRRSVRFQYDPR
Sbjct: 61  CRYLLL---RENEEVKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVRFQYDPR 120

Query: 121 SYALNFDEGIREE----GRHVLRPPSASPIG 144
           SYALNFDEG+ EE    GRH  R P ASPIG
Sbjct: 121 SYALNFDEGMGEEEGGGGRHGFRQPFASPIG 148

[Close]

BLAST of Lsi08G012280 vs. NCBI nr
Match: XP_011649836.1 (uncharacterized protein LOC105434671 [Cucumis sativus] >KGN62974.1 hypothetical protein Csa_021917 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 115/155 (74.19%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 2   ASSSSAINGTLRSEEIRGTDRIEEGDD-HDEVGVSYSSCGCFFGFGSRLTRSGSVRCGYL 61
           +SSSS I+GTLRS         EEG+D  D+VGVSYSSCGCFFGF SRL+R   VR GYL
Sbjct: 8   SSSSSPIDGTLRS---------EEGEDLRDQVGVSYSSCGCFFGFRSRLSR---VRGGYL 67

Query: 62  PLQPHRKEEEVK--QSWMMKKVKRLNEIIKAMAGRKWRSLINGIMNKRRSVRFQYDPRSY 121
           PLQ +RK EEVK  QSWMM KVKRLNEIIKA+AGRKWRSLINGI+NKRRSVRFQYDPRSY
Sbjct: 68  PLQSNRKTEEVKQHQSWMMTKVKRLNEIIKAVAGRKWRSLINGIINKRRSVRFQYDPRSY 127

Query: 122 ALNFDEGIREEGRHVLRPPSASPIGLGIGMNRTQI 154
           ALNFDEGI EE RH L      PIGLGIGMNR QI
Sbjct: 128 ALNFDEGIEEEARHTLH-----PIGLGIGMNRNQI 145

[Close]

BLAST of Lsi08G012280 vs. TAIR 10
Match: AT5G25240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 38/110 (34.55%), Postives = 52/110 (47.27%), Query Frame = 0


Query: 20  TDRIEEGDDHDEVGVSYSSCGCFFGFGSRLTRSGSVRCGYLPLQPHRKEEEVKQSWMMKK 79
           TDR     D  E   ++  CG F  F     R G              +EE + +W  +K
Sbjct: 3   TDRENLLSDDYEETAAFCGCGYFRSFSFTRWRRGDDESRSRGGWSGCLQEERRGNWGSEK 62

Query: 80  VKRLNEIIKAMAGRKW----RSLINGIMNKRRSVRFQYDPRSYALNFDEG 126
           +K L EI + +AG KW    RS  +G    RR V F YD ++Y+LNFD+G
Sbjct: 63  LKGLKEISEKIAGPKWKNFIRSFSSGRKKMRRDVDFTYDLKNYSLNFDDG 112

The following BLAST results are available for this feature:

BLAST of Lsi08G012280 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G012280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG87	1.5e-51	76.92	Stress induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8...	[more]
A0A1S3BC68	1.5e-51	76.92	uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=...	[more]
A0A6J1K5B0	4.1e-49	73.51	uncharacterized protein LOC111492425 OS=Cucurbita maxima OX=3661 GN=LOC111492425...	[more]
A0A0A0LPP6	5.3e-49	74.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382480 PE=4 SV=1	[more]
A0A6J1BV09	6.9e-49	70.44	uncharacterized protein LOC111004972 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of Lsi08G012280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029494.1	1.9e-53	73.62	hypothetical protein SDJN02_07833, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008445245.1	3.1e-51	76.92	PREDICTED: uncharacterized protein LOC103488331 [Cucumis melo] >KAA0064905.1 str...	[more]
KAG6598556.1	1.3e-49	61.66	hypothetical protein SDJN03_08334, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022997532.1	8.4e-49	73.51	uncharacterized protein LOC111492425 [Cucurbita maxima]	[more]
XP_011649836.1	1.1e-48	74.19	uncharacterized protein LOC105434671 [Cucumis sativus] >KGN62974.1 hypothetical ...	[more]

BLAST of Lsi08G012280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25240.1	1.0e-07	34.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 24..132
None	No IPR available	PANTHER	PTHR33168:SF46	NHL DOMAIN PROTEIN	coord: 24..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G012280.1	Lsi08G012280.1	mRNA