Lsi08G011800 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G011800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	chr08: 20409473 .. 20410706 (+)
RNA-Seq Expression	Lsi08G011800
Synteny	Lsi08G011800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAGCTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAGGGTTTTCATTTTTTTTCTTCTCTAAATTCCATTTCCATCCCCTCCACTTTCAAGAATTCTCTATTTTAATCAACTTTTCAAAATTTCGAATTGTCAATTTTATTTTATTTATTTATTACAGTTTTTTTTTGAGAAAATTTATTACAGTTCTTTAGTCATTAAATTTTGAAAAAGACAATAATTTGATTTATTATTTATGTTTTTGACTCTGCGAGTGGTTTAAACTTTTTAACCTCTTAATTGAAACGACATATTTTATGATTGTATTAATAATTTTAGTTATTATTATTATTTTGTCGTCACATATCTTCAACTTAGATAGCTCAAGATCTTGTCGATAATTTTAGTTATTGTTGTTATTTTGTCGATATCTTCTATAGCTCATATGAATTTAAATACCACATGTTAATACATCTATTTAAAGTTACTTTATTTTTTTCCTTAAAAGAGTGACATTATTCATTAAATTAAAGATTCAAACTAAGTTGATTATTTTAAAAAAAATTAGAGATTGAAATAAATATTTTGGAGGAGTGTTTTCATGTAAAGTAAAATAAGTTCACATATTTACAAATATAGCAGAATGCCAAAATGTAATCTATCATTACTATTCGTATCTATTTTTCATGATAGACACCGATAGATGACAATAATTACCATATTTTGAATAAAATTGATTTTTTAAAAAAGGGTTAAAAATAGATTTAAATCACGAAATTTTTTCGACGAACGTCTTATATTTGGATGTATATGGAACGACAGATCGGATTGCAATGAGCATAACTTTGCCAGCCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAA

mRNA sequence

ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAGCTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCATAACTTTGCCAGCCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAA

Coding sequence (CDS)

ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAGCTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCATAACTTTGCCAGCCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAA

Protein sequence

MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

Homology

[Close]

BLAST of Lsi08G011800 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 72/256 (28.12%), Postives = 85/256 (33.20%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEP--------------RADFG-GGSYGGGRAVGSS 62
           RPGDWNC  C   NFQRR SC RC  P                DF  G SYG G +   +
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  SFG--------------------------------FTTGPDVRPGDWYCTVANCGAHNFA 122
           ++G                                F      R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

Query: 123 SRSICFKCGASKDEASAAA----------------------------------YD----G 156
               C +CGAS+  A+  A                                  Y      
Sbjct: 463 KNVCCLRCGASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQLSIN 522

[Close]

BLAST of Lsi08G011800 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 38/116 (32.76%), Postives = 45/116 (38.79%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEPRAD---FGGGSYGGGRAVGSSSFGFTTGPDVRP 62
           R GDW C SCN+ NF  R+ C RC  P+ D     GG  GGG   G    G+  G D   
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGS 334

Query: 63  GDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPG 116
           G         G HN        + G S+         G  +R    N GG   R G
Sbjct: 335 G-------GGGYHNRD------RGGNSQGGGGGGGGGGGYSRFNDNNGGGRGGRGG 377

[Close]

BLAST of Lsi08G011800 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-04
Identity = 30/85 (35.29%), Postives = 38/85 (44.71%), Query Frame = 0


Query: 5  GDWNC--RSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 64
          GDW C  + C ++NF RR SC RCG  +         GG  +G +    + G      DW
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGL-FSANDW 70

Query: 65 YCTVANCGAHNFASRSICFKCGASK 88
           C    CG  N+A RS C  C   K
Sbjct: 71 QC--KTCGNVNWARRSECNMCNTPK 92

[Close]

BLAST of Lsi08G011800 vs. ExPASy TrEMBL
Match: A0A0A0LLW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.5e-86
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 200

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 201 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 235

[Close]

BLAST of Lsi08G011800 vs. ExPASy TrEMBL
Match: A0A1S3BBL4 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103488288 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.5e-86
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

[Close]

BLAST of Lsi08G011800 vs. ExPASy TrEMBL
Match: A0A6J1KQR0 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111496351 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.9e-84
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Lsi08G011800 vs. ExPASy TrEMBL
Match: A0A6J1GJE4 (TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=LOC111454402 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.7e-82
Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG  YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASN PGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNCPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Lsi08G011800 vs. ExPASy TrEMBL
Match: A0A6J1BUS6 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111004930 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.3e-82
Identity = 140/155 (90.32%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGEPRADFGGG YGG   VGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC + NCGAHNFASRSICFKCGA KD+ASA AYDGD+ RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSN  SPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNGNSPYS 155

[Close]

BLAST of Lsi08G011800 vs. NCBI nr
Match: XP_004138734.1 (uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >KAE8652195.1 hypothetical protein Csa_022624 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 5.1e-86
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

[Close]

BLAST of Lsi08G011800 vs. NCBI nr
Match: XP_038884423.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038884424.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 325.9 bits (834), Expect = 1.9e-85
Identity = 149/155 (96.13%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADF GGSYG GR +GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFVGGSYGSGRVLGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGASKDE SAAAYDGDLTRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGASKDETSAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WIC RSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICNRSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

[Close]

BLAST of Lsi08G011800 vs. NCBI nr
Match: XP_023002539.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 8.1e-84
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Lsi08G011800 vs. NCBI nr
Match: XP_023538151.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.5 bits (815), Expect = 3.1e-83
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG +YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAAYGGGRG-GSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Lsi08G011800 vs. NCBI nr
Match: KAG6585459.1 (Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318.2 bits (814), Expect = 4.0e-83
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1    MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPG 60
            MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG  YGGGR  GSSSFGFTTGPDVRPG
Sbjct: 971  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRG-GSSSFGFTTGPDVRPG 1030

Query: 61   DWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
            DWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+R+RGFNFGGASNRPGWKSGD
Sbjct: 1031 DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 1090

Query: 121  WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
            WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 1091 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 1124

[Close]

BLAST of Lsi08G011800 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.2e-55
Identity = 107/170 (62.94%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGG------GSYGGGRAVGSSSFGFTTG 60
           MSRPGDWNCRSC+HLNFQRRDSCQRCG+ R+  GG      G++ GGRA+  S+FGFTTG
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNF-GGRAM--SAFGFTTG 60

Query: 61  PDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASA----------AAYDGDLTRMRG 120
            DVRPGDWYCTV NCG HNFASRS CFKCG  KDE  A          A +D D+ R R 
Sbjct: 61  SDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRV 120

Query: 121 FNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 155
              GG   R  WKSGDWIC R  CNEHNFASR ECFRCNAPRD ++++ +
Sbjct: 121 PGNGG---RSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

[Close]

BLAST of Lsi08G011800 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-53
Identity = 109/173 (63.01%), Postives = 123/173 (71.10%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYG-----GGRAVGSSSFGFTTGP 60
           M+RPGDWNCR C+HLNFQRRDSCQRC EPR   GG S       GGR V SSSFGF TGP
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRP--GGISTDLLSGFGGRPV-SSSFGFNTGP 60

Query: 61  DVRPGDWYCTVANCGAHNFASRSICFKCGASKDE---ASAAAYDGDLTRMRG-----FNF 120
           DVRPGDWYC + +CG HNFA+RS CFKCGA+KDE   +SAAA  G +    G     F F
Sbjct: 61  DVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGF 120

Query: 121 GGASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 155
           GG+S+      R  WKSGDWIC RS CNEHNFASR ECFRCNAP++  ++ PY
Sbjct: 121 GGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

[Close]

BLAST of Lsi08G011800 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-31
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 5   GDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYC 64
           GDW C +C H NF++R+SCQ+CG P+  FGG        V  S++ +    +V  GDWYC
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK--FGG--------VDVSTYLYNR-TEVMAGDWYC 65

Query: 65  TVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGDWICA 124
              NCG+HN+ASR+ C++CG  K E +   Y     +M  +   GA+  PGWK+GDW+C 
Sbjct: 66  GALNCGSHNYASRTSCYRCGMIKVEYTEQYYG---AQMVAYGNDGAACPPGWKTGDWVCP 125

Query: 125 RSDCNEHNFASRRECFRCNAPRD 148
           R  C  HN+ASR ECF+C   RD
Sbjct: 126 RVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Lsi08G011800 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-15
Identity = 56/163 (34.36%), Postives = 73/163 (44.79%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 62
           R GDW C  C + N+  R  C RC +PR      +    + +             R GDW
Sbjct: 5   REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWL------------PRIGDW 64

Query: 63  YCTVANCGAHNFASRSICFKCGASKDEA--SAAAYDGD--LTRMRGFNFGGAS-NRPG-- 122
            CT   C  +N+ASR  C KCG SK+ A  SA A  G    T +  F  G  S ++PG  
Sbjct: 65  ICT--GCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSL 124

Query: 123 ---------------WKSGDWICARSDCNEHNFASRRECFRCN 144
                          W+SGDWIC    C  HN++SR +C +CN
Sbjct: 125 LAFSNATNQASVHKEWRSGDWICR---CGFHNYSSRIQCKKCN 150

[Close]

BLAST of Lsi08G011800 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 27/94 (28.72%), Postives = 38/94 (40.43%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDW 62
           + GDW C++CN LNF +   C RC +                        T   + PG+W
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDK----------------------PTLRQINPGEW 338

Query: 63  YCTVANCGAHNFASRSICFKCGASKDEASAAAYD 97
            C   +C   NF   SIC KC   + +A+    D
Sbjct: 339 EC--ESCNYINFRRNSICLKCDHKRQKAANVTPD 348

The following BLAST results are available for this feature:

BLAST of Lsi08G011800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	2.7e-13	28.13	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	2.7e-05	32.76	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
Q5ZLX5	2.3e-04	35.29	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]

BLAST of Lsi08G011800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW7	2.5e-86	96.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1	[more]
A0A1S3BBL4	2.5e-86	96.13	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1KQR0	3.9e-84	94.84	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GJE4	1.7e-82	93.55	TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1BUS6	6.3e-82	90.32	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]

BLAST of Lsi08G011800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138734.1	5.1e-86	96.13	uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 ...	[more]
XP_038884423.1	1.9e-85	96.13	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03888...	[more]
XP_023002539.1	8.1e-84	94.84	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]	[more]
XP_023538151.1	3.1e-83	94.19	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]	[more]
KAG6585459.1	4.0e-83	94.19	Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Lsi08G011800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	2.2e-55	62.94	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.6e-53	63.01	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	1.3e-31	44.76	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	8.6e-15	34.36	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	3.3e-06	28.72	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 60..86 e-value: 2.6E-7 score: 40.3 coord: 5..29 e-value: 9.3E-6 score: 35.1 coord: 119..145 e-value: 1.6E-5 score: 34.3
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 3..30 e-value: 6.5E-4 score: 19.0 coord: 117..146 e-value: 6.8E-9 score: 34.9 coord: 58..87 e-value: 5.1E-6 score: 25.7
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 62..83
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 121..142
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 117..148 score: 10.579303
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.969523
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 58..89 score: 9.980816
None	No IPR available	GENE3D	4.10.1060.10		coord: 53..90 e-value: 1.5E-13 score: 51.7 coord: 2..32 e-value: 1.2E-10 score: 42.4 coord: 110..149 e-value: 1.4E-11 score: 45.5
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 1..153
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..153
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 111..149
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 54..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G011800.1	Lsi08G011800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding