Lsi08G011610 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCAGGAATAAAACTTTCAACTTTCTCACGCGCGCGTGGACGTTTCTCGATACTCATCCGTCGATCTCCACAATTTTCAGATCAGGAACTCTATTCCTCCAGGGTTCACACCGGCGGATTTCAGATCAAATCCAATCCCTCTCCGATTATTACTGCGTCGATTTCAGAATTAAGGTCGGAGATTCATAGGTAATCATGTCCAGCGCCGTCGTGCTTGCACGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCATCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGTATCTTATTCAGCACTCTTTGTGTTTTTCTTGAAGAATGTTTATTTTGTTGATTTCCTTTCTGAATGATGAGAATTTGCGCGGTTGCGAATTTGATAGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCAGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGGTGAAGCCCTAACTTTAGTTGATGAATTGTTCATTTTACTGTTGGTTGGATTGCTACTTTTGGTCGGGTTCGGATGTATAATTTGGGATTTTTATTGCTTAATTCTTGGACTGATACAACTGAGAACGAAGAAACTCGTTAGACTTTCTTAGAAATTTGAATAAATTAGAACAGAATTGAGCGCGAGCCTAGTGTTTCTGGAAAAACAGTTGTTGAATGTAATATTGTAGATTCCTTATTATTTTGTTTGGAGAATCCCATCCAGCGTCTGCCTCTACCATATTAAATGGTCCATCAAGTTTCATTGCTGAATCTAAGCATCAAGCTACATTTTTCTGGTGATTACTTTGATTATAACAACTTGAATGTTGTGTTCTTTCAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGTTTGTTGCCTTCTTTCTTACTTTGTTTTTTAAATCAAAATCCTCATATTTGGTTCTTTTAAATTTCGTTTACTTTTCAGTTTGATTGTTTGTTCTGAATCTCTTCTGATGCTTTCTTTCAAGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTTGTGAAGATTCTTGTAATCGAGATTTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGAATAATTATGTCAGCTCAAGCCTCTTGGCCTGCCAAGAGAGGTTAATCATCCGCCTCTTGAATTTTGAACACAAGATGTTAAAGTTCAATTACGATGGGAAGGGTAACTTGTTTTTCTACTCTCGAGCTCTGTAGTTTGCCCCTTTGATAGATAATGATATTCTTGTAAAAGCTAGAGTGGGAAGTTTGTATGCATCTTTACTTCTCTGGGTTTCGATCCTCTTCCCTTGGAAAACCATTTCTTCATTCTGATGTTGGTTTTAAATAATTTCCTTTTTGCCTTCTTTTTGATGGGAAAACGTCTATATATTGTTCTGGTAATTTGAAAATACTGGAAATATTCAATAAGTTACAGGAGGAAGCCAATGTAGTAGGATTGCTTCCTTTTCCAGACGTATGTAACATATTTTGTTGCAAAATCTGCTTGCATGTACTTCTTGAATATTTGTTGAACCAATGATATTCTTGATATTTATTTTTCCTTTATTGGATAATACTCTCAAGATCATCTTTTTAGCTTTTTAGCTTTTGTCACTATCATATGTTCAATAACTAGGAAACTTAGGCTTGAATCTAAAACACGAGTATTGACAAACC TCCAGGAATAAAACTTTCAACTTTCTCACGCGCGCGTGGACGTTTCTCGATACTCATCCGTCGATCTCCACAATTTTCAGATCAGGAACTCTATTCCTCCAGGGTTCACACCGGCGGATTTCAGATCAAATCCAATCCCTCTCCGATTATTACTGCGTCGATTTCAGAATTAAGGTCGGAGATTCATAGGTAATCATGTCCAGCGCCGTCGTGCTTGCACGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCATCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCAGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTTGTGAAGATTCTTGTAATCGAGATTTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGAATAATTATGTCAGCTCAAGCCTCTTGGCCTGCCAAGAGAGGTTAATCATCCGCCTCTTGAATTTTGAACACAAGATGTTAAAGTTCAATTACGATGGGAAGGGTAACTTGTTTTTCTACTCTCGAGCTCTGTAGTTTGCCCCTTTGATAGATAATGATATTCTTGTAAAAGCTAGAGTGGGAAGTTTGTATGCATCTTTACTTCTCTGGGTTTCGATCCTCTTCCCTTGGAAAACCATTTCTTCATTCTGATGTTGGTTTTAAATAATTTCCTTTTTGCCTTCTTTTTGATGGGAAAACGTCTATATATTGTTCTGGTAATTTGAAAATACTGGAAATATTCAATAAGTTACAGGAGGAAGCCAATGTAGTAGGATTGCTTCCTTTTCCAGACGTATGTAACATATTTTGTTGCAAAATCTGCTTGCATGTACTTCTTGAATATTTGTTGAACCAATGATATTCTTGATATTTATTTTTCCTTTATTGGATAATACTCTCAAGATCATCTTTTTAGCTTTTTAGCTTTTGTCACTATCATATGTTCAATAACTAGGAAACTTAGGCTTGAATCTAAAACACGAGTATTGACAAACC ATGTCCAGCGCCGTCGTGCTTGCACGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCATCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCAGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTTGTGAAGATTCTTGTAATCGAGATTTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGAATAATTATGTCAGCTCAAGCCTCTTGGCCTGCCAAGAGAGGTTAA MSSAVVLARSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG Homology
BLAST of Lsi08G011610 vs. ExPASy Swiss-Prot
Match: Q9SZY7 (V-type proton ATPase subunit c''1 OS=Arabidopsis thaliana OX=3702 GN=VHA-c''1 PE=1 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 5.3e-77 Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy Swiss-Prot
Match: Q9SLA2 (V-type proton ATPase subunit c''2 OS=Arabidopsis thaliana OX=3702 GN=VHA-c''2 PE=1 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 1.3e-75 Identity = 156/175 (89.14%), Postives = 165/175 (94.29%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy Swiss-Prot
Match: P23968 (V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VMA16 PE=1 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 3.7e-46 Identity = 94/165 (56.97%), Postives = 135/165 (81.82%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy Swiss-Prot
Match: Q91V37 (V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus OX=10090 GN=Atp6v0b PE=1 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 3.5e-44 Identity = 94/160 (58.75%), Postives = 127/160 (79.38%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy Swiss-Prot
Match: Q2TA24 (V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus OX=9913 GN=ATP6V0B PE=1 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 5.9e-44 Identity = 93/160 (58.13%), Postives = 126/160 (78.75%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy TrEMBL
Match: A0A0A0LQ28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379870 PE=3 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 4.2e-85 Identity = 180/182 (98.90%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy TrEMBL
Match: A0A5A7V9W8 (V-type proton ATPase subunit c''1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002840 PE=3 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 5.5e-85 Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy TrEMBL
Match: A0A1S3BBZ9 (V-type proton ATPase subunit c''1 OS=Cucumis melo OX=3656 GN=LOC103488269 PE=3 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 5.5e-85 Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy TrEMBL
Match: A0A6J1K5F4 (V-type proton ATPase subunit c''1-like OS=Cucurbita maxima OX=3661 GN=LOC111491843 PE=3 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 4.6e-84 Identity = 177/182 (97.25%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. ExPASy TrEMBL
Match: A0A6J1HEY2 (V-type proton ATPase subunit c''1-like OS=Cucurbita moschata OX=3662 GN=LOC111462909 PE=3 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 4.6e-84 Identity = 177/182 (97.25%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. NCBI nr
Match: XP_038885623.1 (V-type proton ATPase subunit c''1 [Benincasa hispida]) HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Lsi08G011610 vs. NCBI nr
Match: XP_004138742.1 (V-type proton ATPase subunit c''1 [Cucumis sativus] >KGN62907.1 hypothetical protein Csa_021826 [Cucumis sativus]) HSP 1 Score: 323.9 bits (829), Expect = 8.6e-85 Identity = 180/182 (98.90%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. NCBI nr
Match: XP_008445147.1 (PREDICTED: V-type proton ATPase subunit c''1 [Cucumis melo] >KAA0064963.1 V-type proton ATPase subunit c''1 [Cucumis melo var. makuwa]) HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84 Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. NCBI nr
Match: XP_022962488.1 (V-type proton ATPase subunit c''1-like [Cucurbita moschata] >XP_022996666.1 V-type proton ATPase subunit c''1-like [Cucurbita maxima] >KAG6598594.1 V-type proton ATPase subunit c''1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029527.1 V-type proton ATPase subunit c''1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 320.5 bits (820), Expect = 9.6e-84 Identity = 177/182 (97.25%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. NCBI nr
Match: XP_023547273.1 (V-type proton ATPase subunit c''1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 318.2 bits (814), Expect = 4.7e-83 Identity = 175/182 (96.15%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Lsi08G011610 vs. TAIR 10
Match: AT4G32530.1 (ATPase, F0/V0 complex, subunit C protein ) HSP 1 Score: 288.5 bits (737), Expect = 3.7e-78 Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 0
BLAST of Lsi08G011610 vs. TAIR 10
Match: AT2G25610.1 (ATPase, F0/V0 complex, subunit C protein ) HSP 1 Score: 283.9 bits (725), Expect = 9.2e-77 Identity = 156/175 (89.14%), Postives = 165/175 (94.29%), Query Frame = 0
BLAST of Lsi08G011610 vs. TAIR 10
Match: AT4G32530.2 (ATPase, F0/V0 complex, subunit C protein ) HSP 1 Score: 272.7 bits (696), Expect = 2.1e-73 Identity = 159/210 (75.71%), Postives = 168/210 (80.00%), Query Frame = 0
BLAST of Lsi08G011610 vs. TAIR 10
Match: AT1G75630.1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 ) HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16 Identity = 53/151 (35.10%), Postives = 88/151 (58.28%), Query Frame = 0
BLAST of Lsi08G011610 vs. TAIR 10
Match: AT1G19910.1 (ATPase, F0/V0 complex, subunit C protein ) HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16 Identity = 53/151 (35.10%), Postives = 88/151 (58.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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