Lsi08G010670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G010670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 19263339 .. 19267712 (+)
RNA-Seq ExpressionLsi08G010670
SyntenyLsi08G010670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGGGTTGCTTATACTTTAGTTAGGCATCTCAAGAGAGTGTCCTGTCGGTCAATTTACCAGTGTCTGTACATCTTACATCTGCAGGTGCAGTGTTCTTTATGAAACTCTTTGTAGTTTATGAGATTTTTTCCTATCTCCTTTGTATGATACGAATTGCATTTAAGTTCAACATCTAGACATTACTCTAGAAAATTACAATTGACAAATCGAGCACTACAAGATTCTTTCCATCATTAAAATAGAACATTCCCAATTCTTTTTTCCACTACATCGATTAAAATTGGGGGGGGGGGGGCCTTTGAAACAATTTTATGGATCCCCTACCTCTGCTGGAATATACAAACAGCCATCAATTTAAATGATTGCTCGCGCCAATTTTTTCTAACCCGTAATGATCTTGTTGATGTCATAGAGGAGTGCCAAGGAGGGGGACAGCATCATATTCAATGGCATGCTTTCTCGTATCACAAGCTTCTGGAGGGCTGCATTGGCGTAGAATATGCAGAACTTCCTTCATCGAAGGTCGTACTTCAGGTAACATGCTTGTACAAATTAGACCAAGTTTGAATAGAGAAGTCATCTCTTCCAAATTGCATGGGTTTTTGATTTCCTCATCAAGAGCATCAATAATAGGCTTTCCCTCACTATAATGCAGCCATGCCCATTCTGCTAGGCTTGTGTGCTCATCTCCCCAGTTAGGTTCTCTTCCTGTTGTAAGTTCCAGGAGTACAACCCCCAAGCTATAGACATCAATCGTCTCATTGACTTTCGTTGTGTAGGCATACTCTGCAATAGAGATCATGGAAAATTGTCAAACCTATATTTTAGAAGCTCTCTATTAGAATAACATGTTTAGTATATTCAGTTGTGGAGATACCCCCTCTCCCCCTCTAGTTTGGCTGAAAAAAGAAAAATCAAACTATTCAAAACAGCGGCATTTTTGTTTTACGTAGGTTTACTAAAACAAGAAATAGCTCGGCAGGCAGGCCTATATGAATGAAAACTGTGGGGGATATGGATTGGGGGGGGGGGGGCCTTTGAAACAATTTTATGGATCCCCTACCTCTGCTGGAATATACAAACAGCCATCAATTTAAATGATTGCTCGCGCCAATTTTTTATAAACAGTAATGATCTTGTTGATGTCATAGAGGAGTGCCAAGGAGGGGAACAGCATCATATTCAATGGCATGCTTTCTCGTATCACAAGCTTCTGGAGGGCTGCATTGGCGTAGAATATGCAGAACTTCCTTCATCGAAGGTCGTACTTCAGGTAACATGCTTGTACAAATTAGACCAAGTTTGAATAGAGAAGTCATCTCTTCCAAATTGCATGGGTTTTTGATTTCCTCATCAAGAGCATCAATAATAGGCTTTCCCTCACTATAATGCTGCCATGCCCATTCTGCTAGGCTTGTGTGCTCATCTCCACAGTTAGGTTCTCTTCCTGTTGTAAGTTCCAGGAGTACAACCCCAAAGCTATAGACATCAATCTTCTCATTGACTTTCGTTGTGTAGGCATACTCTGCAATAGAGATCATGGAAATTTGTCAAACCTATATTTTAGAAGCTCTCTATTAGAATAACATGTTTAGTATATTCAGTTGTGGAGATACCCCCTCTCCCCCTCTAGTTTGGCTGAAAAAAGAAAAATCAAACTATTCAAAACAGCGGCATTTTTGTTTTACGTAGGTTTACTAAAACAAGAAATAGCTCGGCAGGCAGGCCTATATGAATGAAAACTGTAAGTGATATGGATTTGTCTGATTTATGATGATTAAAGACTATATTCTTTCCACAATTATCTTGGATGAACTTACCTGCAGCTATTATATTATGATGTTTAAAGAGCTTGTCTTTTCCAAGGAAGTTGTGGTATGAAGTGAACTTACCTGGGGCTATGTAGCCGAAAGATCCTGCTATTGCAGACATGGTGTGGGGCTCTCCCTGCCTGGCCAGCATCTTGGCCAGCCCAAAATCTGCTATCCTTGCCTGGAACTCGCGGTCTAATAAGATGTTACTCGACTTCACATCTCGATGAATGATTGGTGGAGAGCAATCATGGTGCATATAACTGAGGCCTTGTGCAGCTCCAATAGCAATCTGCAACCTCCTCGGCCAGTCTAAGACATATTGTTCAACAAAATCCATTGCAGCAGCTGTTAACCTTTTCTTCTTTTTATGAAGCCACCTATCTAGGCTCTGATTTTCCATGTATTCATAGACTAAGAGCTTTGAATTCTCATTCCAGACGCAGCATAGCAACTTCACTATATTTGAATGCCGAATTGAGCCTAGTATTTGAACTTCTGCTTGAAATTCTTTCTCATGTTTTTGATCCAACTTACTGTTACTCCAAATCCTTTTGACGGCAACATTATAACCAGCATGGTTGATGTCTATGCAGTACACTTTGCCAGATCCACCGCTTCCGATCAGATTAGTTTCTGTCAAGTTTGACAAGATATTCATTTCTGTGAAGTCCAATCTTTGGAATGAAGTCAGCTTCCATGTGTCAGGGTGGCATCTTTCATCCTTTTTGCAATGACTTTTATATAGGAGGGAAATCCATAGTAAAGCAATTATGAGCAAGGTAACAGTGAGGGCTAGAATGAGGGGAAGATATCTAGAGGACTGAACTTTTGAATCTCTTTGTCTAGAGTAACAGCTCGGAAGGTCGAGTACACCGGTGGCGGTACATAGTTTGGGGTCGTTCAAGAAACTCCTTCCATATGCTATATTCTCGTACTCATCTGGGATTTTCCCTGAAAGCTGATTGGAAGACAAGTTGAGGGAAGCCAGTCTTAAGTGGCCAATTTCAGGTGGGATTTCACCTGTGAAGTTATTACCTGATAAATCCAGGTAAAGGAGGTTAGGAAGAGAACCAAACGCTGCAGGAATATGGCCTGAAAGTTCATTTCTTGAGAGATTTAGAGTATTCAATGATTTCCACGAACCAATTGTTGACGGAAGTTGGCCCGAGAGTCGATTGCCACTCAATACAAGTGTGGTAAGACGAGGAAGACTTGTCAATCCATCAGGGAACTTACCAGAAAGTAGATTGTTGCTTGCCTCAAACACAATCAAGTTTTGCCAAGCAGACACATTTTGAGGAATTTGACCCCAAAATTTGTTGTCATTTATTGCCAGTCTCGAGAGATTCCAAGATAAGCTATCTGGTAGCTCGCCTGAGAATGAATTTCCATCTAACATTATGCTTGATAGATTGAAAGTAGTCCAAAGCCCTGGAGGAATTTCGCCAGAAAAGTTGTTGTTTGAAAGCTGGACTGTACGTAGGGTCCTGCAATTGCCAAGCCCTTTTGGCAATTCGCCACTAAGATTATTGGAAAAGGCAACTACTCCCTGTAAGACGCCATTTTTACAGAGATGTTCAGGCAAGGAACCACTTAGTTTATTCATTGAAACCTCCAATGCTTCCAGATTTGAGTGCAGACCCAATTCTTGTGGCAAGCTCCCAGTTAAGCTGTTGTTGAATACACGAAAACCTTTTAGTGTAGGTATTAGGCCTAGACTTCTTGGAATCTCACCAGACAAGTGATTTGCAAACAAGTTCAGGACCTGCAACTTTTGTAACTTTCCAAAATCTTCAGGGATTGTGCCGCGTAAATTGTTTGCAGAGAGGTCAACATTTAGTAAATTTGATGCTCGGATCGACTTGGGTATCTCACCAGACAACTGATTTTGGTAGAGAAACAAGTTGCTTAAATTCTGCAAAGAGAACAACCCAGCAGGAATAAAGCCTATCAAGTTGTTACTCGATAAATCCAAGTGCTCAAGGCTCAAAAGATCCGAAAAGCTTTCTGGGATTTCACCTATCAAATTGGATTTTGTCATCCACATATACTTCAACTTCTTCAGTTTCTTGAAATCTTGTGGTATTGGCGATGGGACAAGCAAAGTGTTATACGCCATGCTCAAAGTTTCAAGATTGGACAAATTACCAATTTCAGCTGGCAATGTACCATTGCATTGAGTTCTGTAAATGTTCAAAGTTCTCAAATCTGACAATCGTCCTAGCGCTGCTGGAAAATCGCCCGAGAAGTTGTTAGCGCTAAGGTCCATGTACTGCAGAGTTCGAAGCCGCTCTACGTCTTGGGGTATTGGACCCACAAAATAGTTTCCTGAAAGATCAAGATATTTGAGCTTGGAACAGTTGTACAGAACTTCTGGGAACTCACCAGGGAAGTAGTTCCATGAAAGATCAAGCACAGTGAGATTTTGCAGGTTACAGATGACAATTGGGAATCTCCCAGTGATATTCTTGTTCCTCAGAGAGATTCCAGTAACCGTGCCGTCTCTACAGATGATCTCAGGCCAATCACAGGGCGGGGACGAGGCGTTCCATAA

mRNA sequence

ATGGGGAGGTTGTGGAGATACCCCCTCTCCCCCTCTAGTTTGGCTGAAAAAAGAAAAATCAAACTATTCAAAACAGCGGCATTTTTGTTTTACGTAGAGGAGTGCCAAGGAGGGGAACAGCATCATATTCAATGGCATGCTTTCTCGTATCACAAGCTTCTGGAGGGCTGCATTGGCGTAGAATATGCAGAACTTCCTTCATCGAAGGTCGTACTTCAGCTCGGAAGGTCGAGTACACCGGTGGCGAGAAACAAGTTGCTTAAATTCTGCAAAGAGAACAACCCAGCAGGAATAAAGCCTATCAAGTTGTTACTCGATAAATCCAAGTGCTCAAGGCTCAAAAGATCCGAAAAGCTTTCTGGGATTTCACCTATCAAATTGGATTTTGTCATCCACATATACTTCAACTTCTTCAGTTTCTTGAAATCTTGTGGTATTGGCGATGGGACAAGCAAAGTGTTATACGCCATGCTCAAAGTTTCAAGATTGGACAAATTACCAATTTCAGCTGGCAATGTTACAGATGACAATTGGGAATCTCCCAGTGATATTCTTGTTCCTCAGAGAGATTCCAGTAACCGTGCCGTCTCTACAGATGATCTCAGGCCAATCACAGGGCGGGGACGAGGCGTTCCATAA

Coding sequence (CDS)

ATGGGGAGGTTGTGGAGATACCCCCTCTCCCCCTCTAGTTTGGCTGAAAAAAGAAAAATCAAACTATTCAAAACAGCGGCATTTTTGTTTTACGTAGAGGAGTGCCAAGGAGGGGAACAGCATCATATTCAATGGCATGCTTTCTCGTATCACAAGCTTCTGGAGGGCTGCATTGGCGTAGAATATGCAGAACTTCCTTCATCGAAGGTCGTACTTCAGCTCGGAAGGTCGAGTACACCGGTGGCGAGAAACAAGTTGCTTAAATTCTGCAAAGAGAACAACCCAGCAGGAATAAAGCCTATCAAGTTGTTACTCGATAAATCCAAGTGCTCAAGGCTCAAAAGATCCGAAAAGCTTTCTGGGATTTCACCTATCAAATTGGATTTTGTCATCCACATATACTTCAACTTCTTCAGTTTCTTGAAATCTTGTGGTATTGGCGATGGGACAAGCAAAGTGTTATACGCCATGCTCAAAGTTTCAAGATTGGACAAATTACCAATTTCAGCTGGCAATGTTACAGATGACAATTGGGAATCTCCCAGTGATATTCTTGTTCCTCAGAGAGATTCCAGTAACCGTGCCGTCTCTACAGATGATCTCAGGCCAATCACAGGGCGGGGACGAGGCGTTCCATAA

Protein sequence

MGRLWRYPLSPSSLAEKRKIKLFKTAAFLFYVEECQGGEQHHIQWHAFSYHKLLEGCIGVEYAELPSSKVVLQLGRSSTPVARNKLLKFCKENNPAGIKPIKLLLDKSKCSRLKRSEKLSGISPIKLDFVIHIYFNFFSFLKSCGIGDGTSKVLYAMLKVSRLDKLPISAGNVTDDNWESPSDILVPQRDSSNRAVSTDDLRPITGRGRGVP
Homology
[Close]
BLAST of Lsi08G010670 vs. ExPASy TrEMBL
Match: A0A0S3TCP1 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.11G253300 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 83  RNKLLKFCKENNPAGIKPIKLLLDKSKCSRLKRSEKLSGISPIKLDFVIHIYFNFFSFLK 142
           RN + +F   N P GI P+K   D+S  S+      +SGISP KL   +   FN  + ++
Sbjct: 22  RNIMFRFFSMNKPPGISPLKSFCDRSNLSKATMFPIVSGISPTKLQSNMKKNFNLLNRIQ 81

Query: 143 -SCGIGDGTSKVLYAMLKVSRLDKLPISAGNV 174
            SC + +G +  L    K SRLDKLPIS G V
Sbjct: 82  LSCNL-EGGNMELDDKSKNSRLDKLPISEGIV 112

[Close]
BLAST of Lsi08G010670 vs. NCBI nr
Match: BAU02936.1 (hypothetical protein VIGAN_11253300 [Vigna angularis var. angularis])

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-04
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 83  RNKLLKFCKENNPAGIKPIKLLLDKSKCSRLKRSEKLSGISPIKLDFVIHIYFNFFSFLK 142
           RN + +F   N P GI P+K   D+S  S+      +SGISP KL   +   FN  + ++
Sbjct: 22  RNIMFRFFSMNKPPGISPLKSFCDRSNLSKATMFPIVSGISPTKLQSNMKKNFNLLNRIQ 81

Query: 143 -SCGIGDGTSKVLYAMLKVSRLDKLPISAGNV 174
            SC + +G +  L    K SRLDKLPIS G V
Sbjct: 82  LSCNL-EGGNMELDDKSKNSRLDKLPISEGIV 112

The following BLAST results are available for this feature:
BLAST of Lsi08G010670 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G010670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0S3TCP11.9e-0440.22Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.11G... [more]
BLAST of Lsi08G010670 vs. NCBI nr
Match NameE-valueIdentityDescription
BAU02936.13.9e-0440.22hypothetical protein VIGAN_11253300 [Vigna angularis var. angularis][more]
BLAST of Lsi08G010670 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..199

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G010670.1Lsi08G010670.1mRNA