Lsi08G010560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G010560
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 19158706 .. 19162154 (-)
RNA-Seq ExpressionLsi08G010560
SyntenyLsi08G010560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATTGGGTATATGAAGATTTGAAGTGCAACTGTGGAGTTATTTTTATAAAAAATTTAAAAGGATTTTATTATATAAATAATTAGAAATTGTGGCAAAATACATTTTTTTTAAGGGTTGGAGTACTATGATTTATTACATTCTATAAAATATCATATAAATATTTAAAATAATTAACAAAATTACTCAATGACCTTTTAAACCTATTATTAAGAATTCAGAGACTAAAAAGTATATTTTGAAAATTCAATGACTAAATGCATCTATTCTCAAAAGTTCGAAGAATGAAAAGGTACATTCTAAAAGTTCAAGAACCATTCACGCATATTTGTCAAAACTGAGTTTCCCAAGAAGTATCTATTCAAAAAATAAAAAAGATAAAACAAAACATAAAAAAAAAATGAACGTGTAGTTTTTTTTAAAACGATAATGCAATACCGAAACACCACCAACAAACATGGAAACCATTAACCTTCTTCAAGAAAAAGAGGAAGAACAAAAGCTGGAAAGTCATCTTTCCTCAGAGCCAAGACGACCTAAAGAGGAAGCTAAATAAGCTAAATTATATGCAACTTTGTTCTCCTCTTTAGGGATCTTACAAAAATGATATATATGTACAACAGCAGTGAGGCTAAGAGCCTTAATCACAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGACTTCAGACAAATCATTGTCTATATGGTTCAACAATCTAGCCTCCTCCAAAGAATCATACTCGACTTCCACCATAGGATTCTGCCTGTACCACAATCTTTTTAACTCAGCCAGACCAACCACCACAACTTTAGTTTCCAAAAATTTGACTTCCCAATTGTGGTTCAAAAACTTGCAACTTCCCATAATTGGCATCCCAGGATGATCATGAAGAATCCACCCACTCCTCTCTAGTCGAAGCTCGTAAGGAGGAGAGGGGAGGGCGAAACCTCCCAAAAGAGACTTCCAACAAATATTCCACAACATGAATAATAGATCTCTCATTAGAAGACCCTTGGTTGAAGCGAATCGCATTCCTTTAATTTCAAATACTCCACAGAAGTGTGAGAATCTTTCCCAACTGCTCTCTAAGATTAATCTCCTTTAAACACTCCCATTAATCACTAGAAGACCAGGATCCCCTGCCCACATAAAACACAATAATATTAGAGGGGAAAAAAGTATTCCAGATGTTCTTAGAAACTCTACATTCCCACATGATGTCACACGTAGTTTCCATATGCACCCTGCAAAAACTGCAAGAATAATTGCGTTTTCTAGTTGAATTTCGAATAATTTAAGATAGTAAAATCACCACTAATTTGAAAGTTTTTGTTTGTGTTATCATATTTTGAAAACAGAAGTTAGTATTTATTACATATTCTCCTTGGTCCCCTCTTTCTCACTTCTTTTCTTGGACATACCATTCAAGGTAGACATATGCAAAAGAATATAGGCACAAGCTGAATCCATCGTCGACGAATCAATCCCTATCTTGGTTGTTGACTACAAACTCGATGTCTTCATGAGCAACACTCAAATAACTTACAAGCTTGAAGAATCTTTAAGCATTTATGAACCTGAGGACCACGTAAATTTAAACATCTATAGTTAGTTATATACTTATCTTTACGAATCATTAAATCCATCATGTTTTTTGATCTCACCATATTCTTCTCTTACTTGTAAGTTAACCAAATATGTATATCAAATCTACAAAAATATTTTAAATACAATACAACTCATCGATATACTTCTCTGAAACTTTCAGAAAATTACATTTCTTGTATCGTAATTCAACAAATAATTCAATGCTGTAACACCCAGAGACAAAAACAAAATTATAACTTATATCTTTCATCTATTACACATAATATCAAAACATAACATTAGAGGATAACAAGATTATCAAAAGGAACTCAAAAAAGGGAGTAAAAAAGAAAAGGAAAAAAAACATTATCAAAAGAGTGAAAGAGAGCAACTTTTAAATCTCTTTGACTCTTCCTCTTCCCTCTAGTATTGGAGGAAGCACTTATCTTATCATATAATATAATTCATTCATTCATACATATACATAAAAGAAAAAAAAATTAAAAAAAGGGTGACCCCTTAGATTTTGGACTGAAAAAAGGGTACTTTATTTTAGTGACATCATATACGTATCTTCCCCTTTTTCGACATCTTCGAAGGGACGGTCAAATTTGCAAGGATCCACCTCTTGCAGAAGCTGAACCACCTCTCCCATGGCGGGTCGAAGCACTGGATTCTTGTAAGTACAGCGAATGGCGATTCTCAGAGCCTTAATTATGTCATCCCTGAACAACCCTTTTAATTTCTTGTCAAGAATCTCAAGAACCCCTTCTTTTGTGTCCACTTTATTCGAAACCCAGAATACAATGTTCTTGTTTTCTCCATACTCTGTTTCAATCGGCTTCTTCCCTGTAATCAACTCCATTAACACTACTCCAAAGCTGTACACATCGCACTTGGTTGTTGCCTTTGATGAATATGCATATTCTGTGTGATTTATAACATATTGTGAGAAATAACAATGAAATCGATAATGGGGTTTTCTGAAATTGGGATTTGAATCGATTTATGAAACTTACCAGGGGCTAAATAGCCGTATGTCCCTGCGATTACAGAGTTGGTTGAATCTTTAGTTCCTTGCAGGACTTTGGCGATGCCGAAATCTGCAACTTTGGGTTGGTAATTTGCATCCAATAAAATGTTTGTGGTTTTGATATCTCTGTGGATTACCGGCGGCGAGAGATCGTGGTGGAGATAAGCGAGGCCTTGGGCGATTCCCACCGCGATGCGGTGGCGCGTGGGCCAATCAAGATGAATCCACCCTTTATGAAGGGCGTCCCATAAATTGCCGTTTGGCATGTATTCGTAAACCAGAAGGCTGCAATTTAGACCTGAAAAGTAGCTATAGAGTTTCACGATGTTCTTATGCCTTATTGTTCCTAGGGTTTCGACCTCTGTTTTCAATTCTTTGTCGAAGAGATGTTTCGCTCTTCGATTCCATAGCCTCTTCACGGCGACGATTTCTCCTTTTCCGAGCTCGATTTTGTAGACTGTTCCTGATCCACCGTGGCCCACAATGTTCTTTTCCACCATGGCTTCGAGAATCCTGCTTTGGTCGAAGTTCTGCAAATGGAAGAATGACGAAGAAAGGGTTTCTTCGTTTTCGATCTCTGATGTTTTTCTTGTTGTGATTCGACGTTTTAGAAACAGGACGGCGCCGGTGAAGAAGATTAGCAATGGAATGACGATTCCCCAGATGAAATTTAGACGTTTTTTGAAGGAGAAATGTGAACAAATGGGGAATTTCTGATCAGGTGAAATGAAATACGCCGGTGGAACACATAGATTTGGGTTGCCGGAGAAGCTATCTGCTAACCCTTGTTTGATTAAGGACAAAGGAATTGCACCGGAAAGTTGA

mRNA sequence

ATGGAAGTTAGTATTTATTACATATTCTCCTTGGTCCCCTCTTTCTCACTTCTTTTCTTGGACATACCATTCAAGGCACAAGCTGAATCCATCGTCGACGAATCAATCCCTATCTTGGTTGTTGACTACAAACTCGATGTCTTCATGAGCAACACTCAAATAACTTACAAGCTTGAAGAATCTTTAAGCATTTATGAACCTGAGGACCACAAGCTGAACCACCTCTCCCATGGCGGGTCGAAGCACTGGATTCTTCGAATGGCGATTCTCAGAGCCTTAATTATGTCATCCCTGAACAACCCTTTTAATTTCTTGTCAAGAATCTCAAGAACCCCTTCTTTTGTGTCCACTTTATTCGAAACCCAGAATACAATGTTCTTGTTTTCTCCATACTCTGTTTCAATCGGCTTCTTCCCTGTAATCAACTCCATTAACACTACTCCAAAGCTGTACACATCGCACTTGGTTGTTGCCTTTGATGAATATGCATATTCTGACTTTGGCGATGCCGAAATCTGCAACTTTGGGTTGCGAGGCCTTGGGCGATTCCCACCGCGATGCGGTGGCGCGTGGGCCAATCAAGATGAATCCACCCTTTATGAAGGGCGTCCCATAAATTGCCGTTTGGCATGTATTCGTAAACCAGAAGGCTGCAATTTAGACCTGAAAAGTAGCTATAGAGTTTCACGATGTTCTTATGCCTTATTGTTCCTAGGGTTTCGACCTCTGTTTTCAATTCTTTGTCGAAGAGATGTTTCGCTCTTCGATTCCATAGCCTCTTCACGGCGACGATTTCTCCTTTTCCGAGCTCGATTTTGTAGACTGTTCCTGATCCACCGTGGCCCACAATGTTCTTTTCCACCATGGCTTCGAGAATCCTGCTTTGGTCGAAGTTCTGCAAATGGAAGAATGACGAAGAAAGGGTTTCTTCGTTTTCGATCTCTGATAAACAGGACGGCGCCGGTGAAGAAGATTAGCAATGGAATGACGATTCCCCAGATGAAATTTAGACGTGAAATGAAATACGCCGGTGGAACACATAGATTTGGGTTGCCGGAGAAGCTATCTGCTAACCCTTGTTTGATTAAGGACAAAGGAATTGCACCGGAAAGTTGA

Coding sequence (CDS)

ATGGAAGTTAGTATTTATTACATATTCTCCTTGGTCCCCTCTTTCTCACTTCTTTTCTTGGACATACCATTCAAGGCACAAGCTGAATCCATCGTCGACGAATCAATCCCTATCTTGGTTGTTGACTACAAACTCGATGTCTTCATGAGCAACACTCAAATAACTTACAAGCTTGAAGAATCTTTAAGCATTTATGAACCTGAGGACCACAAGCTGAACCACCTCTCCCATGGCGGGTCGAAGCACTGGATTCTTCGAATGGCGATTCTCAGAGCCTTAATTATGTCATCCCTGAACAACCCTTTTAATTTCTTGTCAAGAATCTCAAGAACCCCTTCTTTTGTGTCCACTTTATTCGAAACCCAGAATACAATGTTCTTGTTTTCTCCATACTCTGTTTCAATCGGCTTCTTCCCTGTAATCAACTCCATTAACACTACTCCAAAGCTGTACACATCGCACTTGGTTGTTGCCTTTGATGAATATGCATATTCTGACTTTGGCGATGCCGAAATCTGCAACTTTGGGTTGCGAGGCCTTGGGCGATTCCCACCGCGATGCGGTGGCGCGTGGGCCAATCAAGATGAATCCACCCTTTATGAAGGGCGTCCCATAAATTGCCGTTTGGCATGTATTCGTAAACCAGAAGGCTGCAATTTAGACCTGAAAAGTAGCTATAGAGTTTCACGATGTTCTTATGCCTTATTGTTCCTAGGGTTTCGACCTCTGTTTTCAATTCTTTGTCGAAGAGATGTTTCGCTCTTCGATTCCATAGCCTCTTCACGGCGACGATTTCTCCTTTTCCGAGCTCGATTTTGTAGACTGTTCCTGATCCACCGTGGCCCACAATGTTCTTTTCCACCATGGCTTCGAGAATCCTGCTTTGGTCGAAGTTCTGCAAATGGAAGAATGACGAAGAAAGGGTTTCTTCGTTTTCGATCTCTGATAAACAGGACGGCGCCGGTGAAGAAGATTAGCAATGGAATGACGATTCCCCAGATGAAATTTAGACGTGAAATGAAATACGCCGGTGGAACACATAGATTTGGGTTGCCGGAGAAGCTATCTGCTAACCCTTGTTTGATTAAGGACAAAGGAATTGCACCGGAAAGTTGA

Protein sequence

MEVSIYYIFSLVPSFSLLFLDIPFKAQAESIVDESIPILVVDYKLDVFMSNTQITYKLEESLSIYEPEDHKLNHLSHGGSKHWILRMAILRALIMSSLNNPFNFLSRISRTPSFVSTLFETQNTMFLFSPYSVSIGFFPVINSINTTPKLYTSHLVVAFDEYAYSDFGDAEICNFGLRGLGRFPPRCGGAWANQDESTLYEGRPINCRLACIRKPEGCNLDLKSSYRVSRCSYALLFLGFRPLFSILCRRDVSLFDSIASSRRRFLLFRARFCRLFLIHRGPQCSFPPWLRESCFGRSSANGRMTKKGFLRFRSLINRTAPVKKISNGMTIPQMKFRREMKYAGGTHRFGLPEKLSANPCLIKDKGIAPES
Homology
[Close]
BLAST of Lsi08G010560 vs. NCBI nr
Match: KAF7817081.1 (hypothetical protein G2W53_031050 [Senna tora])

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-05
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 87  MAILRALIMSSLNNPFNFLSRISRTP-----SFVSTLFETQNTMFLFSPYSVSIGFFPVI 146
           +A+ R  I++      +++S I ++      S + TL  TQ TM LFSPYSVSIG FPV 
Sbjct: 9   LAVHRIAILNIFTASSSYISPILQSTTLLMLSLLCTLLLTQLTMSLFSPYSVSIGLFPVT 68

Query: 147 NSINTTPKLYTS 154
           NSI+TTPKLYTS
Sbjct: 69  NSISTTPKLYTS 80

The following BLAST results are available for this feature:
BLAST of Lsi08G010560 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G010560 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G010560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7817081.13.6e-0550.00hypothetical protein G2W53_031050 [Senna tora][more]
BLAST of Lsi08G010560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G010560.1Lsi08G010560.1mRNA