Lsi08G010210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G010210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Locationchr08: 18772817 .. 18773395 (-)
RNA-Seq ExpressionLsi08G010210
SyntenyLsi08G010210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTCCAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGGGAACATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATATTCTTTCGGTCCTCTTACATAAATGGCGAACTCAATAA

mRNA sequence

ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTCCAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGGGAACATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATATTCTTTCGGTCCTCTTACATAAATGGCGAACTCAATAA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTCCAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGGGAACATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATATTCTTTCGGTCCTCTTACATAAATGGCGAACTCAATAA

Protein sequence

MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLHFDWCCVLVIAFASQNILSVLLHKWRTQ
Homology
[Close]
BLAST of Lsi08G010210 vs. ExPASy TrEMBL
Match: A0A5A7VFJ3 (Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004290 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.8e-90
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH 166
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH 165

[Close]
BLAST of Lsi08G010210 vs. ExPASy TrEMBL
Match: A0A1S3BB05 (uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 152/155 (98.06%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSA 155

[Close]
BLAST of Lsi08G010210 vs. ExPASy TrEMBL
Match: A0A0A0LLD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370490 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155

[Close]
BLAST of Lsi08G010210 vs. ExPASy TrEMBL
Match: A0A6J1KDE3 (uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.8e-78
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKS 159
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +S
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAES 158

[Close]
BLAST of Lsi08G010210 vs. ExPASy TrEMBL
Match: A0A6J1HCV2 (uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.8e-78
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKS 159
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +S
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAES 158

[Close]
BLAST of Lsi08G010210 vs. NCBI nr
Match: KAA0065096.1 (Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa])

HSP 1 Score: 339.7 bits (870), Expect = 1.6e-89
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH 166
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH 165

[Close]
BLAST of Lsi08G010210 vs. NCBI nr
Match: XP_038886443.1 (uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886445.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886446.1 uncharacterized protein LOC120076637 [Benincasa hispida])

HSP 1 Score: 318.9 bits (816), Expect = 2.9e-83
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155

[Close]
BLAST of Lsi08G010210 vs. NCBI nr
Match: XP_004152600.1 (uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736757.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736758.1 uncharacterized protein LOC101213956 [Cucumis sativus] >KGN62990.2 hypothetical protein Csa_022594 [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 5.0e-83
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155

[Close]
BLAST of Lsi08G010210 vs. NCBI nr
Match: XP_008444920.1 (PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_008444921.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_016900065.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 5.0e-83
Identity = 152/155 (98.06%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 156
           AVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSA 155

[Close]
BLAST of Lsi08G010210 vs. NCBI nr
Match: KAG7020253.1 (hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 148/161 (91.93%), Postives = 153/161 (95.03%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           +RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD++DNSF
Sbjct: 61  RRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFF 162
           AVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGKSCFF
Sbjct: 121 AVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFF 160

[Close]
BLAST of Lsi08G010210 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-15
Identity = 55/149 (36.91%), Postives = 77/149 (51.68%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETDTLKFPLVNGANISS 60
           M+V+FP+L  WL  G   K +E + S   G S+L+ SL    ++T T K       + SS
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSL----KKTTTSK-----TGSSSS 60

Query: 61  SSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDD 120
           S ++ KR W  R       E D +      G V   E DD +WSIGW EPHGPGF+++DD
Sbjct: 61  SVKKTKRGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDD 120

Query: 121 SDNSFAVLVPCYGRIYNDFVDETKNSILS 145
               F VLVP Y ++ +   ++  N   S
Sbjct: 121 DCGGFVVLVPLYKKVMDGSGNQIPNGFFS 134

[Close]
BLAST of Lsi08G010210 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-11
Identity = 44/120 (36.67%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 38  RETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSD 97
           +ET+ LKFP       +  +R  KRK    E         + +V  DG           +
Sbjct: 20  KETEALKFP-------TKIARVNKRKELELESFGSSGSESVDVVAGDG----------PE 79

Query: 98  WSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG 157
           WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +      N +LSAV N+ +    G
Sbjct: 80  WSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQLLSAVKNLPNGLPPG 121

[Close]
BLAST of Lsi08G010210 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 43/113 (38.05%), Postives = 57/113 (50.44%), Query Frame = 0 

Query: 38  RETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSD 97
           +ET+ LKFP       +  +R  KRK    E         + +V  DG           +
Sbjct: 20  KETEALKFP-------TKIARVNKRKELELESFGSSGSESVDVVAGDG----------PE 79

Query: 98  WSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI 150
           WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +      N +LSAV N+
Sbjct: 80  WSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQLLSAVKNL 114

The following BLAST results are available for this feature:
BLAST of Lsi08G010210 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G010210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VFJ37.8e-9098.79Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3BB052.4e-8398.06uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=... [more]
A0A0A0LLD02.4e-8398.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370490 PE=4 SV=1[more]
A0A6J1KDE31.8e-7893.04uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCV21.8e-7893.04uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Lsi08G010210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065096.11.6e-8998.79Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa][more]
XP_038886443.12.9e-8399.35uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 unchara... [more]
XP_004152600.15.0e-8398.71uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharact... [more]
XP_008444920.15.0e-8398.06PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_008444921.1 P... [more]
KAG7020253.11.5e-7991.93hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lsi08G010210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65480.18.1e-1536.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G38060.17.1e-1136.67unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G38060.21.2e-1038.05unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34464:SF5SUBFAMILY NOT NAMEDcoord: 1..158
NoneNo IPR availablePANTHERPTHR34464OS09G0376300 PROTEINcoord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G010210.1Lsi08G010210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity