Lsi08G009840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G009840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cytochrome c oxidase subunit 6b-1-like
Location	chr08: 18294933 .. 18296833 (+)
RNA-Seq Expression	Lsi08G009840
Synteny	Lsi08G009840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGATTCCCCGGCCTTGACTCCAATAAAGGGTTGGAGAATGCTTCCTTTGGTCCTGGTGGTTTATTTTGCTCCCTTTATATCATTCTTTTTAAGAGATAAATTGATAACCAAGTTCGAAAGAAGATCAATAGGGTTGAGTCAAATTTTCTTCTTTCCGAACTCCAAAAGCTTGGCAAATTTAATTATATCAATACTTCAACACTCCTCTGCACTCGTGAGCTTGAAAATTTATAAAATACCCAACAAATGGAACACAATATTAATTGAGAAGAAATAACATTGCACTGAACACATGGCATGTTAAATCACCGATCTACCCAAAAACGTAAACTAATGAATCATGGTAAATTTAATTATATTAATACTTCAATACTCTCCCAACACCCAACATTGGCGAGTTGGCATATGTCTCGTTTGGTTTTTATAGAAGTCCTGGGAGCTCTGCTACCTTATGATTTCTCTGTGTTACTGTAATTTTAGAGATGAGAGTAATTTTACTCTTAAGAGCATAGTGAGAAGCACATCTTCGGTTATTATTGTTCTCATTTAGGGACATTGTCGTAGAGCTTGCCCCTTTGCTTATACAAATTCTCAACCTGGTAATGTTCCAATCTGAGAATTGAGAATAACTTTCTGTTAACTTGGCTTGTAGCAATATTCCTTGAAGGAAAAAGAGGAGAAGGTGGATATACCAAAGCCCTCTGAAGTGAAAGAGGTAGAGAACTCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGCAGTGACAATTCTCCTGCTGAAGAAAACAATGCAGATGCTCCAGTAGCTGCTGCTGTAGAGGACTCCGAAACCAGTCCTGCTGCTGAAAATGACAGTGGAGCTGCCGATGAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATTCCGGTGAACAAGAAAGCACCGATGAGCGACCTGAGATTAAGGTTGCTGCCCTGATGAATTACCAACAATGCTTTTGTTATTTACTTTTGTATATATTGTTTGTTCATTGTTTTGTTCTCTCTCATATGCAGCTTGAAACAGCACCAGCAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTATATTGAGTACCATAGGTAACTATCGATATGTTTTTCCTACTTAATCGTTTCTTCATTTCTTGGTCCTTTCACAATTTAGATGAACTTTCTTGAAAGTATGTGCTTATCTTTGTGATGTGTACAGATGCATACAAGCAAAAGGGGAAGGCGCTCCGGAGTGCGACAAGTTTGCAAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTATGTGTTTTTCCTAAATGCCTTGGTGTCAGATTTATTTTCGTTCACTTGTTTTCTGTTTCTAGAGCACTCAAGAACACATTTGTACAACCTACCTAGTATTTCGTTTTATAGTCGAGTGTTCTTAATCTTAATTTCTTTTAGTAACGCCGTGTTTTGTGATATAATTGTTGCAGGTAGAGAAGTGGAATGAGCAGAGGGAGAATGGAACCTTCCCAGGTCCGCTGTAGGAGTAAAATTTAGCAGCAGTTTGCCACACGCTGCCGTATGAAGGCAAATAAACTCTGGGGAATGTTCTCTTTCAAACAATTGAGTTATAATAATTTTCGGCTGGTTTTGGTATTTTATTCAAAGTCCATTTGCAAGCAAGTTTTGTTGATGCAACCGCATTATTGTTCTTGATTAACATGCCAAATCGTTTTTCCATATTTAGATCTTGTTTCATCAAATTACACGGAGCTAGAACCACTCCTATATGTGCACTGTTTGATGCATCTATGAAAATATTCAAATAAACTGTAGAAACTAATTCTCTTTTTTCTTAAGCCA

mRNA sequence

ATGACTGGATTCCCCGGCCTTGACTCCAATAAAGGAGATGAGAGTAATTTTACTCTTAAGAGCATAGTGAGAAGCACATCTTCGCAATATTCCTTGAAGGAAAAAGAGGAGAAGGTGGATATACCAAAGCCCTCTGAAGTGAAAGAGGTAGAGAACTCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGCAGTGACAATTCTCCTGCTGAAGAAAACAATGCAGATGCTCCAGTAGCTGCTGCTGTAGAGGACTCCGAAACCAGTCCTGCTGCTGAAAATGACAGTGGAGCTGCCGATGAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATTCCGGTGAACAAGAAAGCACCGATGAGCGACCTGAGATTAAGGTTGCTGCCCTGATGAATTACCAACAATGCTTTTGTTATTTACTTTTGTATATATTGTTTGTTCATTGTTTTGTTCTCTCTCATATGCAGCTTGAAACAGCACCAGCAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTATATTGAGTACCATAGATGCATACAAGCAAAAGGGGAAGGCGCTCCGGAGTGCGACAAGTTTGCAAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAATGAGCAGAGGGAGAATGGAACCTTCCCAGGTCCGCTGTAGGAGTAAAATTTAGCAGCAGTTTGCCACACGCTGCCGTATGAAGGCAAATAAACTCTGGGGAATGTTCTCTTTCAAACAATTGAGTTATAATAATTTTCGGCTGGTTTTGGTATTTTATTCAAAGTCCATTTGCAAGCAAGTTTTGTTGATGCAACCGCATTATTGTTCTTGATTAACATGCCAAATCGTTTTTCCATATTTAGATCTTGTTTCATCAAATTACACGGAGCTAGAACCACTCCTATATGTGCACTGTTTGATGCATCTATGAAAATATTCAAATAAACTGTAGAAACTAATTCTCTTTTTTCTTAAGCCA

Coding sequence (CDS)

ATGACTGGATTCCCCGGCCTTGACTCCAATAAAGGAGATGAGAGTAATTTTACTCTTAAGAGCATAGTGAGAAGCACATCTTCGCAATATTCCTTGAAGGAAAAAGAGGAGAAGGTGGATATACCAAAGCCCTCTGAAGTGAAAGAGGTAGAGAACTCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGCAGTGACAATTCTCCTGCTGAAGAAAACAATGCAGATGCTCCAGTAGCTGCTGCTGTAGAGGACTCCGAAACCAGTCCTGCTGCTGAAAATGACAGTGGAGCTGCCGATGAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATTCCGGTGAACAAGAAAGCACCGATGAGCGACCTGAGATTAAGGTTGCTGCCCTGATGAATTACCAACAATGCTTTTGTTATTTACTTTTGTATATATTGTTTGTTCATTGTTTTGTTCTCTCTCATATGCAGCTTGAAACAGCACCAGCAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTATATTGAGTACCATAGATGCATACAAGCAAAAGGGGAAGGCGCTCCGGAGTGCGACAAGTTTGCAAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAATGAGCAGAGGGAGAATGGAACCTTCCCAGGTCCGCTGTAG

Protein sequence

MTGFPGLDSNKGDESNFTLKSIVRSTSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAEENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMNYQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

Homology

[Close]

BLAST of Lsi08G009840 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.4e-37
Identity = 100/216 (46.30%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QY L+++ ++    KP EVKEV      AP EV  + +E   E    Q  + SP E
Sbjct: 11  SLSEQYHLEKEVKQDTSAKPVEVKEV------AP-EVTTQAEEVKTE----QAKEESPVE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           E      V+   E SE++P +   +  A   +    EE  +  +E+ DE    +VA    
Sbjct: 71  E-----AVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENASEEVAE--- 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                 ++LETAPADFRFPTTNQTRHCFTRY+EYHRC+ AKG+ 
Sbjct: 131 -----------------ETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDD 190

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APECDKFAK+YRSLCPSEWV++WNEQRENGTFPGPL
Sbjct: 191 APECDKFAKFYRSLCPSEWVDRWNEQRENGTFPGPL 190

[Close]

BLAST of Lsi08G009840 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 7.3e-34
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 167 MQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEK 226
           ++L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE A EC++FAKYYR+LCP EWV+K
Sbjct: 5   IELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDK 64

Query: 227 WNEQRENGTFPGPL 241
           WNEQRE GTFPGPL
Sbjct: 65  WNEQRETGTFPGPL 78

[Close]

BLAST of Lsi08G009840 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-33
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 167 MQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEK 226
           ++L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE + +C++FAKYYR+LCP EWV+K
Sbjct: 5   IELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDK 64

Query: 227 WNEQRENGTFPGPL 241
           WNEQRE+GTFPGPL
Sbjct: 65  WNEQRESGTFPGPL 78

[Close]

BLAST of Lsi08G009840 vs. ExPASy Swiss-Prot
Match: O94581 (Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 6.4e-22
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 171 TAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQ 230
           T   D RFP TNQT+HCF  YI+Y RCI+AKGE    C +F   Y+SLCP EWVE+W+EQ
Sbjct: 17  TVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQ 76

Query: 231 RENGTFPGPL 241
           RENGTFP P+
Sbjct: 77  RENGTFPAPI 86

[Close]

BLAST of Lsi08G009840 vs. ExPASy Swiss-Prot
Match: Q01519 (Cytochrome c oxidase subunit 12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=COX12 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 169 LETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEKWN 228
           L T   D RFP  NQT+HC+  Y++YH+C+  KGE    C  F K Y +LCP +W+EKW+
Sbjct: 9   LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWD 68

Query: 229 EQRENGTFPGPL 241
           +QRE G F G +
Sbjct: 69  DQREKGIFAGDI 80

[Close]

BLAST of Lsi08G009840 vs. ExPASy TrEMBL
Match: A0A0A0LNV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369100 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 4.5e-79
Identity = 168/216 (77.78%), Postives = 175/216 (81.02%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QYSLKEKEEKVDIP+PSEVKEVENSENAAPAEVVVKNDEPPVEA ADQ SD  PAE
Sbjct: 11  SLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVADQSSDIPPAE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           E+N D+  AAAVEDSETSPAAENDSGAA+EESSGAGEEENSG+QESTDERPEIK      
Sbjct: 71  ESNGDSS-AAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERPEIK------ 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                   LETAP DFRFPTTNQTRHCFTRYIE+HRC QAKGEG
Sbjct: 131 ------------------------LETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEG 190

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Sbjct: 191 APECEKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 195

[Close]

BLAST of Lsi08G009840 vs. ExPASy TrEMBL
Match: A0A5A7VCW9 (Cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004690 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.4e-75
Identity = 163/217 (75.12%), Postives = 170/217 (78.34%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S + QYSLKEKEEKVDIP PSEVKEVEN+ENAAPAEVVVKNDEPPVEADADQ SDN PAE
Sbjct: 11  SLAEQYSLKEKEEKVDIPLPSEVKEVENAENAAPAEVVVKNDEPPVEADADQSSDNPPAE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSG-AADEESSGAGEEENSGEQESTDERPEIKVAALM 144
           E       + AVEDSET PAAENDSG AA+EESSGAGEEENSG+QESTDE+PEIK     
Sbjct: 71  E-------SPAVEDSETGPAAENDSGAAAEEESSGAGEEENSGDQESTDEQPEIK----- 130

Query: 145 NYQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGE 204
                                    LETAP DFRFPTTNQTRHCFTRYIEYHRC QAKGE
Sbjct: 131 -------------------------LETAPVDFRFPTTNQTRHCFTRYIEYHRCTQAKGE 190

Query: 205 GAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           GAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Sbjct: 191 GAPECEKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 190

[Close]

BLAST of Lsi08G009840 vs. ExPASy TrEMBL
Match: A0A1S3BC78 (cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo OX=3656 GN=LOC103488079 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.4e-75
Identity = 163/217 (75.12%), Postives = 170/217 (78.34%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S + QYSLKEKEEKVDIP PSEVKEVEN+ENAAPAEVVVKNDEPPVEADADQ SDN PAE
Sbjct: 11  SLAEQYSLKEKEEKVDIPLPSEVKEVENAENAAPAEVVVKNDEPPVEADADQSSDNPPAE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSG-AADEESSGAGEEENSGEQESTDERPEIKVAALM 144
           E       + AVEDSET PAAENDSG AA+EESSGAGEEENSG+QESTDE+PEIK     
Sbjct: 71  E-------SPAVEDSETGPAAENDSGAAAEEESSGAGEEENSGDQESTDEQPEIK----- 130

Query: 145 NYQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGE 204
                                    LETAP DFRFPTTNQTRHCFTRYIEYHRC QAKGE
Sbjct: 131 -------------------------LETAPVDFRFPTTNQTRHCFTRYIEYHRCTQAKGE 190

Query: 205 GAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           GAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Sbjct: 191 GAPECEKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 190

[Close]

BLAST of Lsi08G009840 vs. ExPASy TrEMBL
Match: A0A6J1HH76 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462906 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 2.0e-71
Identity = 154/216 (71.30%), Postives = 160/216 (74.07%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QYSLKEKEEKVDIPKPSEV+EVENSENA PAEVVVKNDEPPVEADADQGS+N PA+
Sbjct: 11  SLSEQYSLKEKEEKVDIPKPSEVEEVENSENAVPAEVVVKNDEPPVEADADQGSNNPPAD 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
            NN DA  AAAVEDSET+ A              AGEEE SG+QESTDERPEIK      
Sbjct: 71  VNNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDERPEIK------ 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                   LETAPADFRFPTTNQTRHCFTRYIEYHRC QAKGEG
Sbjct: 131 ------------------------LETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEG 182

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APECDKFAKYYRSLCP+EWVEKWNEQRENG FPGPL
Sbjct: 191 APECDKFAKYYRSLCPNEWVEKWNEQRENGCFPGPL 182

[Close]

BLAST of Lsi08G009840 vs. ExPASy TrEMBL
Match: A0A6J1KAZ5 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492226 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.7e-71
Identity = 154/216 (71.30%), Postives = 161/216 (74.54%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QYSLKEKEEKVDI KPSEVKEVENSENAAPAE+VVKNDEPPVEADAD+GS+N PA+
Sbjct: 11  SLSEQYSLKEKEEKVDILKPSEVKEVENSENAAPAEIVVKNDEPPVEADADKGSNNPPAD 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           ENN DA  AAAVEDSET+ A              AGEEE SG+QESTDE+PEIK      
Sbjct: 71  ENNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDEQPEIK------ 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                   LETAPADFRFPTTNQTRHCFTRYIEYHRC QAKGEG
Sbjct: 131 ------------------------LETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEG 182

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APECDKFAKYYRSLCPSEWVEKWNEQRENG FPGPL
Sbjct: 191 APECDKFAKYYRSLCPSEWVEKWNEQRENGCFPGPL 182

[Close]

BLAST of Lsi08G009840 vs. NCBI nr
Match: XP_038886001.1 (cytochrome c oxidase subunit 6b-1-like [Benincasa hispida])

HSP 1 Score: 321.6 bits (823), Expect = 5.7e-84
Identity = 174/216 (80.56%), Postives = 179/216 (82.87%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S + QYSLKEKEEKVDIP PSEVKEVENSENAA AEVVVKNDEPPVEA+A+QGSD+SPAE
Sbjct: 11  SLAEQYSLKEKEEKVDIPNPSEVKEVENSENAAHAEVVVKNDEPPVEAEANQGSDDSPAE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           ENN DAP AAAVEDSETSPAAENDSGAADEESSGAG EENSG+QESTDERPEIK      
Sbjct: 71  ENNGDAPAAAAVEDSETSPAAENDSGAADEESSGAGGEENSGDQESTDERPEIK------ 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                   LETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG
Sbjct: 131 ------------------------LETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 190

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Sbjct: 191 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 196

[Close]

BLAST of Lsi08G009840 vs. NCBI nr
Match: XP_004152624.1 (cytochrome c oxidase subunit 6b-1 [Cucumis sativus] >KGN62709.1 hypothetical protein Csa_022497 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 9.3e-79
Identity = 168/216 (77.78%), Postives = 175/216 (81.02%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QYSLKEKEEKVDIP+PSEVKEVENSENAAPAEVVVKNDEPPVEA ADQ SD  PAE
Sbjct: 11  SLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVADQSSDIPPAE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           E+N D+  AAAVEDSETSPAAENDSGAA+EESSGAGEEENSG+QESTDERPEIK      
Sbjct: 71  ESNGDSS-AAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERPEIK------ 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                   LETAP DFRFPTTNQTRHCFTRYIE+HRC QAKGEG
Sbjct: 131 ------------------------LETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEG 190

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Sbjct: 191 APECEKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 195

[Close]

BLAST of Lsi08G009840 vs. NCBI nr
Match: XP_008444857.1 (PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo] >KAA0065134.1 cytochrome c oxidase subunit 6b-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 292.7 bits (748), Expect = 2.8e-75
Identity = 163/217 (75.12%), Postives = 170/217 (78.34%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S + QYSLKEKEEKVDIP PSEVKEVEN+ENAAPAEVVVKNDEPPVEADADQ SDN PAE
Sbjct: 11  SLAEQYSLKEKEEKVDIPLPSEVKEVENAENAAPAEVVVKNDEPPVEADADQSSDNPPAE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSG-AADEESSGAGEEENSGEQESTDERPEIKVAALM 144
           E       + AVEDSET PAAENDSG AA+EESSGAGEEENSG+QESTDE+PEIK     
Sbjct: 71  E-------SPAVEDSETGPAAENDSGAAAEEESSGAGEEENSGDQESTDEQPEIK----- 130

Query: 145 NYQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGE 204
                                    LETAP DFRFPTTNQTRHCFTRYIEYHRC QAKGE
Sbjct: 131 -------------------------LETAPVDFRFPTTNQTRHCFTRYIEYHRCTQAKGE 190

Query: 205 GAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           GAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Sbjct: 191 GAPECEKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 190

[Close]

BLAST of Lsi08G009840 vs. NCBI nr
Match: XP_023547029.1 (cytochrome c oxidase subunit 6b-1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-73
Identity = 157/216 (72.69%), Postives = 163/216 (75.46%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QYSLKEKEEKVDIPKPSEVKEV+NSENAAPAEVVVKNDEPPVEADADQGSDN+PA+
Sbjct: 11  SLSEQYSLKEKEEKVDIPKPSEVKEVDNSENAAPAEVVVKNDEPPVEADADQGSDNTPAD 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           ENN DA  AAAVEDSET+ A              AGEEE SG+QESTDERPEIK      
Sbjct: 71  ENNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDERPEIK------ 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                   LETAPADFRFPTTNQTRHCFTRYIEYHRC QAKGEG
Sbjct: 131 ------------------------LETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEG 182

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APECDKFAKYYRSLCP+EWVEKWNEQRENG FPGPL
Sbjct: 191 APECDKFAKYYRSLCPNEWVEKWNEQRENGCFPGPL 182

[Close]

BLAST of Lsi08G009840 vs. NCBI nr
Match: KAG6598699.1 (Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.3 bits (721), Expect = 3.8e-72
Identity = 156/216 (72.22%), Postives = 161/216 (74.54%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QYSLKEKEEKVDIPKPSEVKEVENSENA PAEVVVKNDEPPVEADADQGS+N PA+
Sbjct: 11  SLSEQYSLKEKEEKVDIPKPSEVKEVENSENADPAEVVVKNDEPPVEADADQGSNNPPAD 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           ENN DA  AAAVEDSET+ A              AGEEE SG+QESTDERPEIK      
Sbjct: 71  ENNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDERPEIK------ 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                   LETAPADFRFPTTNQTRHCFTRYIEYHRC QAKGEG
Sbjct: 131 ------------------------LETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEG 182

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APECDKFAKYYRSLCP+EWVEKWNEQRENG FPGPL
Sbjct: 191 APECDKFAKYYRSLCPNEWVEKWNEQRENGCFPGPL 182

[Close]

BLAST of Lsi08G009840 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B )

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-38
Identity = 100/216 (46.30%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 25  STSSQYSLKEKEEKVDIPKPSEVKEVENSENAAPAEVVVKNDEPPVEADADQGSDNSPAE 84
           S S QY L+++ ++    KP EVKEV      AP EV  + +E   E    Q  + SP E
Sbjct: 11  SLSEQYHLEKEVKQDTSAKPVEVKEV------AP-EVTTQAEEVKTE----QAKEESPVE 70

Query: 85  ENNADAPVAAAVEDSETSPAAENDSGAADEESSGAGEEENSGEQESTDERPEIKVAALMN 144
           E      V+   E SE++P +   +  A   +    EE  +  +E+ DE    +VA    
Sbjct: 71  E-----AVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENASEEVAE--- 130

Query: 145 YQQCFCYLLLYILFVHCFVLSHMQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEG 204
                                 ++LETAPADFRFPTTNQTRHCFTRY+EYHRC+ AKG+ 
Sbjct: 131 -----------------ETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDD 190

Query: 205 APECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 241
           APECDKFAK+YRSLCPSEWV++WNEQRENGTFPGPL
Sbjct: 191 APECDKFAKFYRSLCPSEWVDRWNEQRENGTFPGPL 190

[Close]

BLAST of Lsi08G009840 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-35
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 167 MQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEK 226
           ++L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE A EC++FAKYYR+LCP EWV+K
Sbjct: 5   IELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDK 64

Query: 227 WNEQRENGTFPGPL 241
           WNEQRE GTFPGPL
Sbjct: 65  WNEQRETGTFPGPL 78

[Close]

BLAST of Lsi08G009840 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-34
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 167 MQLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEK 226
           ++L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE + +C++FAKYYR+LCP EWV+K
Sbjct: 5   IELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDK 64

Query: 227 WNEQRENGTFPGPL 241
           WNEQRE+GTFPGPL
Sbjct: 65  WNEQRESGTFPGPL 78

[Close]

BLAST of Lsi08G009840 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 71.6 bits (174), Expect = 9.5e-13
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 172 APADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVEK-WNEQ 231
           A  + RFP TN+TRHCF R+++YH+CI+  G  A +C+    Y RS+CP E V K W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 232 REN 234
             N
Sbjct: 119 GRN 121

The following BLAST results are available for this feature:

BLAST of Lsi08G009840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7L9	2.4e-37	46.30	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=...	[more]
Q9SUD3	7.3e-34	81.08	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=...	[more]
Q945L0	3.6e-33	78.38	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=...	[more]
O94581	6.4e-22	62.86	Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (str...	[more]
Q01519	1.2e-17	48.61	Cytochrome c oxidase subunit 12, mitochondrial OS=Saccharomyces cerevisiae (stra...	[more]

BLAST of Lsi08G009840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNV6	4.5e-79	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369100 PE=4 SV=1	[more]
A0A5A7VCW9	1.4e-75	75.12	Cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BC78	1.4e-75	75.12	cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo OX=3656 GN=LOC103488079 P...	[more]
A0A6J1HH76	2.0e-71	71.30	cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KAZ5	2.7e-71	71.30	cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Lsi08G009840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886001.1	5.7e-84	80.56	cytochrome c oxidase subunit 6b-1-like [Benincasa hispida]	[more]
XP_004152624.1	9.3e-79	77.78	cytochrome c oxidase subunit 6b-1 [Cucumis sativus] >KGN62709.1 hypothetical pro...	[more]
XP_008444857.1	2.8e-75	75.12	PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo] >KAA0065134.1 c...	[more]
XP_023547029.1	2.6e-73	72.69	cytochrome c oxidase subunit 6b-1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6598699.1	3.8e-72	72.22	Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi08G009840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22450.1	1.7e-38	46.30	cytochrome C oxidase 6B	[more]
AT4G28060.1	5.2e-35	81.08	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G57815.1	2.6e-34	78.38	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G32710.1	9.5e-13	46.03	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 164..240 e-value: 1.1E-33 score: 117.0
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 167..239
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 177..236 e-value: 3.6E-17 score: 62.3
IPR003213	Cytochrome c oxidase, subunit VIb	CDD	cd00926	Cyt_c_Oxidase_VIb	coord: 168..239 e-value: 5.44447E-42 score: 135.899
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..133
None	No IPR available	PANTHER	PTHR46281:SF14	CYTOCHROME C OXIDASE SUBUNIT 6B-1	coord: 23..240
None	No IPR available	PANTHER	PTHR46281	CYTOCHROME C OXIDASE SUBUNIT 6B	coord: 23..240
None	No IPR available	PROSITE	PS51808	CHCH	coord: 184..227 score: 14.047777

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G009840.1	Lsi08G009840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV