Lsi08G009710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G009710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RNA-binding protein 38-like
Location	chr08: 18187218 .. 18193351 (+)
RNA-Seq Expression	Lsi08G009710
Synteny	Lsi08G009710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAACCCTTTTTTTTCTTTCCTTCGCTTCAAAACCCTTTCCCTTCAAACTTATAATTCCTTCTCCCATGGCCGCCTTCCTCTTCCTATCATCAATCTCTTCTTAATTTTCTTTCTTATTTATGAAGAACATCATCATCAAAAATACCCTTCCCCTTCCTAGTTATTCCCCTAATTAATTAGATTATCATCCTAAATTCTAACTCATATGGCTGATAATAATAATTTCCCCCTTAATCATCCTCCGCCCTTCGCCAGCGACACCACTTGGACCAAACTCTTCGTGGGAGGCTTGGCTTGGGAGACCCAATCCCATGAAATGCACACTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCCGAAAATCCAAAGGTTACGGATTCGTAAGTTCCCTTTCCCTTAATTTTCATTTTTTTTTTTTAATTTTGTGTTGTTTTAACTTCTAATTTAATTTAATTAATTAATTTAGGTTACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAACTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCTCCGCCCCCCTCGCCGTCTCACGGAGGTGATCTCCCCGATTAAACTGAAATTAACTTCACTAAATTTATTGATTAATTAATTAATAAATCAATTAACTTTTTTTTTTTTTGCTCGATTCTAATAGGACGAAATCAAATTGGGAATCTCCAAAGTACAACTCCGGCGGCTGCAGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGGTATATGGGCTAGCTATTCTTAAAATTCCCAGAAATGTTGAGCTGTAAATGAAAAAAAAATAAAAATAAAAATAGAATCGGCTGGTTGGTTGCATGGTCCTGCCATAGGCAACAGTATTTTCGATGGTGACAATGTTTTAAGGAAAAACAATTTACCTCGACAAGAAGTCAAATGCCTGTCCAATTTCAGAAGGAAAAAAAAAAAAAAAAGCTTCGTCTTATCCATTTCTATTATTATTATTCTTATTCTTATTATTTATTTTTTGTTTTGCTTCTTTTTGCAGATACCGATCCTACGCCCCAAATTACCACCAAGTTAGTTTTCTCTCTTAATTTTCAGTTATTATTTTCTTTTTTTGAATTTCGCTTTTTAAAACGTCTATTTTAGTCATTTAACTAGAAAATATCTTGATCTTTACATTTATTTTGTTTTTCAACCCTATACGGTTTTATTTTTGGTATTTTTTTTTTTAAATTAAGCTAACAAAACTTCCATGTATTGGTTTCTATATTTTTGTTGTTTACTATAAATATTTTCAAAATCAAACCCAAGACATTTGAAAACTAAAAAAAAATGTCATTTTCAAAAATATTTTTAAAAATGAACTAAAAATTCACAAATGCTTATATAGGAAATGTGAAAACATGAATAAGAAGTCAGAAAGTGTGTGAAGAGTTGACAAACACAATTTTCAAAAATAAAAATTAAATGATTATTCAACGAACTTTAATGACACAATTTTGAGTATGTGTACTAACATGTCAATATGAGAATACAAGTATTTACGAATTTAGATATTGATGAAAAGATAATACAACGATCTCAACAATCAAAATCATTAGTTATCTTATCTAACTAGTGACGAAAATGGAAGTATCTTAAATAGTAATTAAAGCCAATTAGAATTAAAGGTTGAAAAATTGAGTTAAAATGGTTGTGCAGGCTATTTATAATCCACAGCTTCAACAACCACAATTGTACCAGCAATCACCATCTTCATCACCATCTTCTTCTTCATATTACTATGGCTATGGCTATGGCTATTCTTCTTCATCTTCACAGCCTCCAAGAGGAGCATTTTCAGTACATGGCCATACCCCTTCTTCACCATTATCATCATCACCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGCTTATTCTACACTCCAATGCACCAGATCATTACTCCAAGTACTGGTAAATTATAATTATTATATATATATATATATATAATCATCATCATCATATTTATTATACTCTTTTAATTGCATGTGACATTATATATATTATATCTATATGAAATAATAATGAAAATCTGATAATGATTATTATGAGATGAAATTTGATTAGAATTATAGGGAGGGGAATTTTGGGTTATTGTCTTTGGGTTTGAAAGGGAGGCACATGGGTTAAGCCTGAGGCCATGTGAGGAATGAGCTGTCTAATATACCCCATGAAAATAGGTGAATGGAAAGTCCTGACAGATTGGAATCACCAACATAAATAGTGACTTCCACTTTTTTTTTTTTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAGTTCATAAATAGGTTGCATACTCTTTAAAGTTTTACTGATGTTTCAAAAATAAAATTTTGAAAGTTGAGACTTGAGAGACTAAATTTATAATTTTAATTTAATCAAATAATAATGAAGATCAAGTTATTTTTGGTGTCCAACTTCTGTAACTAATGGTTTTTAGAATGATGTTATTTTAAAGGATAAAATTGCTGAACACATTTATAAATATAGCATAATTTCACTGTCAATCTGCGACAGACCGGATAGACTGTAATAGACTACTATTTGTGTCGCGATAGACTACAGATAAACACAGATAATAGTCTATCGCGATCTATCGCAGATAGACAGTGAAATTTTGCTATATTTATAAATATTTTGGTTCATTTTTCTCTATTTGAAAACATCTCCTTTTTAAAAACGATATTTTTGTTTATTTTATAAAAACCCTATTTATATAGTAAAGTTCTTTTTAATGGTTATTTTGGTGCAGTTTGGTTTTTTAATGGAACACTTGCCATGAACAATAGGAATAAATACATTATAGGGGACTTTTTAAAAATAGAAAAATAAAAGAAATTATTTACACAAAATAGCAAAATTTTTTAAATAGTTGGATAGATGATGATAGAAGTCTATCAGAGTCTATCGGTGATAGAAATGATAGAAGTCTATCACTGATATATGTTGATAGAAGTCTATCAATGTCTATCAATGATTTTTTTGCTATTTTCTGTAAATAATTTGATATTTTTTCTATTTGTGAAAATTTTCCTACATTATAACATTTTAATATTTGAAATATGTAGTAGACATATATTAATCATTATAGCCTTATAAAAATATTCTAAAAATTATTGCACATAAAACACAATAAAAAAAAAATAAGGCAGAAAAAAAAATTATATTATTGTTGAGATATGGGATGTGAGTTGTTTGTAGGGTAATATCATGAAATTTAAAGTGTAAGACAAATGAAAATTCAGGCAGAGCTAGCTTTTCTATTATTCAATATAGCAGCTAGCTTTTTCCCCATGATTAAACATAACCAACAAAAACATACAGTAATTTTTTATATATATATTATTGTTGAATAATATTAAATCTATTCACTGATAAGATATGTTCTGTCGCTTTGAATATTAGCTTTAAATCCATGTATATTTAAAATATCAATTTTGGTTTCTATACCCTTATTCTTTCCTTTTTAATATCATTTTTATCTCATTTTTGTAATATAAATATTAACATGACACTTCCTTCACTAAATAATTTCTTAAGATGTAGTCATAAATTTGCATCATATATAAAGTTTACGCGTTTAAATTTTGAATTAATAGGATGTTTTGAAAGTAGTATATTATTTAAGCCTTAATAATACATTATGTTTCTGTTATTTATGTTTTTTTCCCTCTCAATTCTATGTGCATGCGTGTGGTTGTCTATTTAATTATAGGGGTGATCATCAGTCGATTGGCGTTGTTTTGAGACAAATCAACGTCAACCACCGACTTGTCGGTTTAGATAGGTCGGTGGTCGTCGATTGTGGGAAGGCTTATGAAACTGACTGATCGACTACTCATACGATCGGTCGATTTTGATCCATTTTATTCAAGTGTGAAAAATTACATCACTCTTGACATGTTTTTTAGGTTAAAAAACATACGATAGAATATAGTTTGGGACTTTAAAAATTGAGAGATTAAATAAAAGTTGAACAAATTATAAAATTTTGGAGTCGAAATTATATTTTTGTACTAAAAATTATATATGTTGAAGTAGGAAACTTATGTATATTTCAGGTTGGCAGACTCCACAGCATACTCCAACGGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAG

mRNA sequence

CAACAACCCTTTTTTTTCTTTCCTTCGCTTCAAAACCCTTTCCCTTCAAACTTATAATTCCTTCTCCCATGGCCGCCTTCCTCTTCCTATCATCAATCTCTTCTTAATTTTCTTTCTTATTTATGAAGAACATCATCATCAAAAATACCCTTCCCCTTCCTAGTTATTCCCCTAATTAATTAGATTATCATCCTAAATTCTAACTCATATGGCTGATAATAATAATTTCCCCCTTAATCATCCTCCGCCCTTCGCCAGCGACACCACTTGGACCAAACTCTTCGTGGGAGGCTTGGCTTGGGAGACCCAATCCCATGAAATGCACACTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCCGAAAATCCAAAGGTTACGGATTCGTTACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAACTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCTCCGCCCCCCTCGCCGTCTCACGGAGGACGAAATCAAATTGGGAATCTCCAAAGTACAACTCCGGCGGCTGCAGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGATACCGATCCTACGCCCCAAATTACCACCAAGCTATTTATAATCCACAGCTTCAACAACCACAATTGTACCAGCAATCACCATCTTCATCACCATCTTCTTCTTCATATTACTATGGCTATGGCTATGGCTATTCTTCTTCATCTTCACAGCCTCCAAGAGGAGCATTTTCAGTACATGGCCATACCCCTTCTTCACCATTATCATCATCACCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGCTTATTCTACACTCCAATGCACCAGATCATTACTCCAAGTACTGGTTGGCAGACTCCACAGCATACTCCAACGGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAG

Coding sequence (CDS)

ATGGCTGATAATAATAATTTCCCCCTTAATCATCCTCCGCCCTTCGCCAGCGACACCACTTGGACCAAACTCTTCGTGGGAGGCTTGGCTTGGGAGACCCAATCCCATGAAATGCACACTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCCGAAAATCCAAAGGTTACGGATTCGTTACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAACTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCTCCGCCCCCCTCGCCGTCTCACGGAGGACGAAATCAAATTGGGAATCTCCAAAGTACAACTCCGGCGGCTGCAGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGATACCGATCCTACGCCCCAAATTACCACCAAGCTATTTATAATCCACAGCTTCAACAACCACAATTGTACCAGCAATCACCATCTTCATCACCATCTTCTTCTTCATATTACTATGGCTATGGCTATGGCTATTCTTCTTCATCTTCACAGCCTCCAAGAGGAGCATTTTCAGTACATGGCCATACCCCTTCTTCACCATTATCATCATCACCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGCTTATTCTACACTCCAATGCACCAGATCATTACTCCAAGTACTGGTTGGCAGACTCCACAGCATACTCCAACGGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAG

Protein sequence

MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYHQAIYNPQLQQPQLYQQSPSSSPSSSSYYYGYGYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSYFPYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS

Homology

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BLAST of Lsi08G009710 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22
Identity = 91/242 (37.60%), Postives = 121/242 (50.00%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DT  TK+FVGGLAW+T    M+  F ++GDILEAVII DK TR+SKGYGFVTFKD ++A 
Sbjct: 13  DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72

Query: 78  RACANPNPIICGRRANCNIAAFG---RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGL 137
           RAC +  PII GRRANCN+A+ G   R  P   SP  G +N  GN    TP   G++   
Sbjct: 73  RACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN--GN--RATPPHVGNHS-- 132

Query: 138 RPPFPPPQLIFPQ-YRYRSYAPNYHQAIYNPQLQQPQLYQQSPSSSPSSSSYYYG--YGY 197
                  Q  +P  +  + +    HQA+  P    P  Y  +P+ + +    Y G  Y  
Sbjct: 133 -------QWYYPSGFTNQQHQQQNHQAV--PFYGYPSAY-VAPNMTFNQKVGYVGGTYMN 192

Query: 198 GYSSS-----SSQPPRGAFSVHGHTPSSPLSSSPS-YFPYYTNYTHMQQGLFYTPMHQII 248
           GY +       SQP    +  H +     +  + S   P+YT Y + Q      P     
Sbjct: 193 GYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFPQPSFS 238

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BLAST of Lsi08G009710 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20
Identity = 78/209 (37.32%), Postives = 106/209 (50.72%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQSTT---------PAA 137
           RAC +PNPII GR+AN N+A  G +PR      + G +     L   T         P A
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPA 147

Query: 138 AGSYGGLRPPFPPPQLIFPQYRYRSYAPNYHQAIYNPQLQQPQLYQQSP-SSSPSSSSYY 197
                 + P  P P L  P   Y   +P Y Q         P  Y Q P ++SP++++ +
Sbjct: 148 IVQPSVVIPATPVPSLSSPYLEYTPASPAYAQ-------YPPATYDQYPYAASPAAATSF 207

Query: 198 YGYGYGYS---SSSSQPPRGAFSVHGHTP 213
            GYGY  +   + S+  P G   V    P
Sbjct: 208 VGYGYPAAVPQALSAAAPAGTTFVQYQAP 229

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BLAST of Lsi08G009710 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-20
Identity = 74/192 (38.54%), Postives = 103/192 (53.65%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR    + + G       +Q   PA      GL P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIG-------VQQLHPAFIQRPFGLTP 126

Query: 138 PF-PPPQLIFPQYRYRSYAPNYHQAI--YNPQLQ-----QPQLYQQSPSSSPSSSSYYYG 197
            +  PP ++ P     +  P+       YN   Q         Y+Q P ++  ++ Y   
Sbjct: 127 QYIYPPAIVQPSVVIPTPIPSLQSPYIDYNAATQAFTHYTTAAYEQYPYAASPATGY--- 186

Query: 198 YGYGYSSSSSQP 201
            GYGY+S+  QP
Sbjct: 187 MGYGYTSAVQQP 188

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BLAST of Lsi08G009710 vs. ExPASy Swiss-Prot
Match: Q7T3I7 (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-20
Identity = 74/192 (38.54%), Postives = 102/192 (53.12%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR    + + G       +Q   PA      GL P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIG-------VQQLHPAFIQRPFGLTP 126

Query: 138 PF-PPPQLIFPQYRYRSYAPNYHQAI--YNPQLQ-----QPQLYQQSPSSSPSSSSYYYG 197
            +  PP ++ P     +  P+       YN   Q         Y+Q P ++  ++ Y   
Sbjct: 127 QYIYPPTIVQPSMVIPTPIPSLQSPYIDYNAATQAYTHYTTAAYEQYPYAASPATGY--- 186

Query: 198 YGYGYSSSSSQP 201
            GYGY+S   QP
Sbjct: 187 MGYGYTSPVQQP 188

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BLAST of Lsi08G009710 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-20
Identity = 71/187 (37.97%), Postives = 101/187 (54.01%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR   P  + G + QI       P    ++     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQ-QIHPALIQRPFGIPAHYVYPH 126

Query: 138 PFPPPQLIFPQYRYRSYAP-----NYHQAI---YNPQLQQPQLYQQSP-SSSPSSSSYYY 195
            F  P ++ P  +  + A      +Y  A    Y+        Y Q P ++SP+++ Y  
Sbjct: 127 AFVQPGVVIPHVQQAAAASTSPYIDYTSAAYAQYSAAAAAAAAYDQYPYAASPATTGYVT 186

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BLAST of Lsi08G009710 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 5.6e-134
Identity = 250/282 (88.65%), Postives = 255/282 (90.43%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MAD+NNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQSP 180
           QST+PAAAGSYGGLRPPFPPPQLIFP YRYRSYAPN    YHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSSP-SSSSYYYGYGYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSYFPYYTNYTHMQQ- 240
           S SP SSSSYYYGYGY  S SSSQ PR AFSVHGH P      SPSYFPYYTNYTHMQQ 
Sbjct: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPP-----QSPSYFPYYTNYTHMQQQ 240

Query: 241 -GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 275
            GLFYTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 AGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of Lsi08G009710 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.8e-132
Identity = 248/281 (88.26%), Postives = 251/281 (89.32%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MADNNNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQSP 180
           QST PAAAGSYGGLRPPFPPP LIFP YRYRSYAPN    YHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPPLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSSP-SSSSYYYGYGYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSYFPYYTNYTHM-QQ 240
           S SP SSSSYYY YGY  S SSSQ PR AFSVHGH P      SPSYFPYYTNYTHM QQ
Sbjct: 181 SPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVHGHPP-----QSPSYFPYYTNYTHMQQQ 240

Query: 241 GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 275
           GL YTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 GLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of Lsi08G009710 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.3e-103
Identity = 213/287 (74.22%), Postives = 224/287 (78.05%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII+DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 126 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQ 185
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPN    YHQAIYNPQLQ  QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ 183

Query: 186 SPSSSPSSSSYYYGYGYGYSSSSSQPPRGAFSV--------HGHTPSSPLSSSPSYFPYY 245
           SP SS       YGYGYGY SSSS  PRGAF V        HGH PSSPLSSSPSYFPYY
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYY 243

Query: 246 TNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 274
           TNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 TNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 278

[Close]

BLAST of Lsi08G009710 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.9e-97
Identity = 204/283 (72.08%), Postives = 216/283 (76.33%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII+DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 126 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPNYHQAIYNPQLQQPQLYQQSPSS 185
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNY    +     Q QLY QSP S
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYH-----QAQLYPQSPCS 183

Query: 186 SPSSSSYYYGYGYGYSSSSSQPPRGAFSV--------HGHTPSSPLSSSPSYFPYYTNYT 245
           S       YGYGYGY SSSS  PRGAF V        HGH PSSPLSSSPSYFPYYTNYT
Sbjct: 184 SS------YGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYT 243

Query: 246 HMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 274
           HMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 HMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 269

[Close]

BLAST of Lsi08G009710 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.9e-95
Identity = 201/282 (71.28%), Postives = 212/282 (75.18%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNL  TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLH-TT 123

Query: 126 PAAAGSYGGLRPPF-------PPPQLIFPQYRYRSYAPNYHQAIYNPQLQQPQLYQQSPS 185
            AAA S+GGL  P+       PPPQ++FP YRYRSYAPNY    +     QPQLYQQSP 
Sbjct: 124 SAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYH-----QPQLYQQSPC 183

Query: 186 SSPSSSSYYYGYGYGYSSSSSQPPRGAFSVHG------HTPSSPLSSSPSYFPYYTNYTH 245
           SS       YGY YGY SSSSQ PR AF VHG      H PSSPLSSSPSYFPYYTNYTH
Sbjct: 184 SSS------YGYAYGYPSSSSQSPRVAFPVHGYGHGHAHGPSSPLSSSPSYFPYYTNYTH 243

Query: 246 MQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 274
           MQQ LFY  MH I TP TG Q    +PTETE GASGSN+PNT
Sbjct: 244 MQQPLFYAHMHPIATPITGRQ----SPTETEGGASGSNTPNT 268

[Close]

BLAST of Lsi08G009710 vs. NCBI nr
Match: XP_008444844.1 (PREDICTED: RNA-binding protein 38-like [Cucumis melo])

HSP 1 Score: 486.9 bits (1252), Expect = 1.2e-133
Identity = 250/282 (88.65%), Postives = 255/282 (90.43%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MAD+NNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQSP 180
           QST+PAAAGSYGGLRPPFPPPQLIFP YRYRSYAPN    YHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSSP-SSSSYYYGYGYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSYFPYYTNYTHMQQ- 240
           S SP SSSSYYYGYGY  S SSSQ PR AFSVHGH P      SPSYFPYYTNYTHMQQ 
Sbjct: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPP-----QSPSYFPYYTNYTHMQQQ 240

Query: 241 -GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 275
            GLFYTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 AGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of Lsi08G009710 vs. NCBI nr
Match: XP_038884547.1 (RNA-binding protein 38-like [Benincasa hispida])

HSP 1 Score: 485.0 bits (1247), Expect = 4.4e-133
Identity = 251/280 (89.64%), Postives = 255/280 (91.07%), Query Frame = 0


Query: 1   MADNNNFPLNHP-PPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHT 60
           MADNN+F LN P PPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT
Sbjct: 1   MADNNSFLLNRPAPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60

Query: 61  RKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGN 120
            KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPS GGRNQ GN
Sbjct: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSSGGRNQSGN 120

Query: 121 LQSTT-PAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQ 180
           LQSTT PA AGSYGGLRPPFPPPQLIFPQYRYRSYAPN    Y QAIYNPQLQQPQ+YQQ
Sbjct: 121 LQSTTPPAVAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYPQAIYNPQLQQPQMYQQ 180

Query: 181 SPSSSPSSSSYYYGYGYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSYFPYYTNYTHMQQ 240
           SPSSSPSSSSYY+GYGY  SSSSSQ PRGAF        SPLSSSPSYFPYYTNYTHMQQ
Sbjct: 181 SPSSSPSSSSYYFGYGYS-SSSSSQHPRGAF--------SPLSSSPSYFPYYTNYTHMQQ 240

Query: 241 GLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS 275
           GLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 GLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS 271

[Close]

BLAST of Lsi08G009710 vs. NCBI nr
Match: XP_004152633.3 (RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_022450 [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 7.5e-133
Identity = 249/281 (88.61%), Postives = 252/281 (89.68%), Query Frame = 0


Query: 1   MADNNNFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTR 60
           MADNNNFPLNHPPPFA DTTWTKLFVGGLAWETQSHEMH+FFQQFGDILEAVIIQDKHT 
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQSP 180
           QST PAAAGSYGGLRPPFPPPQLIFP YRYRSYAPN    YHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSSP-SSSSYYYGYGYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSYFPYYTNYTHM-QQ 240
           S SP SSSSYYY YGY  S SSSQ PR AFSVHGH P      SPSYFPYYTNYTHM QQ
Sbjct: 181 SPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVHGHPP-----QSPSYFPYYTNYTHMQQQ 240

Query: 241 GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 275
           GL YTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 GLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of Lsi08G009710 vs. NCBI nr
Match: XP_023546076.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 2.1e-103
Identity = 214/287 (74.56%), Postives = 224/287 (78.05%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ T 
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TA 123

Query: 126 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQ 185
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPN    YHQAIYNPQLQ  QLYQ 
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ- 183

Query: 186 SPSSSPSSSSYYYGYGYGYSSSSSQPPRGAF--------SVHGHTPSSPLSSSPSYFPYY 245
               SP SSSY YGYGYGY SSSS  PRGAF         VHGH PSSPLSSSPSYFPYY
Sbjct: 184 ---PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYY 243

Query: 246 TNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 274
           TNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 TNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 280

[Close]

BLAST of Lsi08G009710 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 386.0 bits (990), Expect = 2.8e-103
Identity = 213/287 (74.22%), Postives = 224/287 (78.05%), Query Frame = 0


Query: 6   NFPLNHPPPFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGY 65
           NF   HPPPF  DTTWTKLFVGGLAWETQS EM  FFQQFG+ILEAVII+DK+T KSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQSTT 125
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 126 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPN----YHQAIYNPQLQQPQLYQQ 185
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPN    YHQAIYNPQLQ  QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ 183

Query: 186 SPSSSPSSSSYYYGYGYGYSSSSSQPPRGAFSV--------HGHTPSSPLSSSPSYFPYY 245
           SP SS       YGYGYGY SSSS  PRGAF V        HGH PSSPLSSSPSYFPYY
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYY 243

Query: 246 TNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 274
           TNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 TNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 278

[Close]

BLAST of Lsi08G009710 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-50
Identity = 128/264 (48.48%), Postives = 161/264 (60.98%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+T KSKGYGFVTF++ 
Sbjct: 10  PF-GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTG 129

Query: 134 LRPPFPP---PQLIFPQYRYRSYAPN---YHQAIYNPQLQQPQLYQQ----------SPS 193
           +  P PP   PQL++P Y Y +Y P+   YHQA+YN QLQQ Q YQQ          SPS
Sbjct: 130 MAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPS 189

Query: 194 SSPSS---SSYYYGYGYGYSSSSSQPPRGAFSVHGHTPS--SPLS------SSPSYFPYY 251
           SS ++   S YYYGY       S Q PR  +  H H P   +P        SSPS+  Y 
Sbjct: 190 SSGATIMPSPYYYGY-------SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYP 249

[Close]

BLAST of Lsi08G009710 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-49
Identity = 130/273 (47.62%), Postives = 164/273 (60.07%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+T KSKGYGFVTF++ 
Sbjct: 10  PF-GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTG 129

Query: 134 LRPPFPP---PQLIFPQYRYRSYAPN---YHQAIYNPQLQQPQLYQQ----------SPS 193
           +  P PP   PQL++P Y Y +Y P+   YHQA+YN QLQQ Q YQQ          SPS
Sbjct: 130 MAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPS 189

Query: 194 SSPSS---SSYYYGYGYGYSSSSSQPPRGAFSVHGHTPS--SPLS------SSPSYFPYY 253
           SS ++   S YYYGY       S Q PR  +  H H P   +P        SSPS+  Y 
Sbjct: 190 SSGATIMPSPYYYGY-------SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYP 249

Query: 254 TNYTHMQQGLFYTPMHQIITPSTGWQ-TPQHTP 259
           +N +      F  P+  +++ ST  +  PQ  P
Sbjct: 250 SNSS------FAPPLQGVLSSSTESEAVPQQVP 263

[Close]

BLAST of Lsi08G009710 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.8 bits (403), Expect = 3.0e-39
Identity = 115/263 (43.73%), Postives = 143/263 (54.37%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT TK+FVGGLAWET + EM  +F QFG+ILEAVII DK T KSKGYGFVTF+D 
Sbjct: 10  PF-GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDS 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQSTTPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP  P     GR Q G+          SY G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSTPR----GRGQGGSPSQYQGGGQSSYTG 129

Query: 134 LRPPF---PPPQLIFPQYRYRSYAP-NYHQAIYNPQLQQPQLYQQSPSSSPSSSSYYYGY 193
           +  P       QL++P Y Y   +   YHQA+YN QLQQ Q YQQ           Y G 
Sbjct: 130 MAAPVQQAAAAQLMYPSYGYTYNSEYGYHQALYNAQLQQAQYYQQ---------QMYGGG 189

Query: 194 GYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSY-FPYYTNYTHMQQGLFYTPMHQIITPS 253
           G    SSS+  P   + +   +P   L     Y + ++      QQ    +    +I PS
Sbjct: 190 GATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYPS 249

Query: 254 -TGWQTPQHTPTETEAGASGSNS 271
                TP + PT     +S + S
Sbjct: 250 NVEAPTPSNVPTSQGPLSSSTES 258

[Close]

BLAST of Lsi08G009710 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-37
Identity = 102/228 (44.74%), Postives = 136/228 (59.65%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWETQS  +   F+Q+G+ILEAV+I DK+T +SKGYGFVTF+DP
Sbjct: 17  PF-GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 76

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPP---SPSHGGRNQ-----IGNLQSTTP 133
           E+ARRACA+P PII GRRANCN+A+ GRPRPP P    P+  GR +     IGN+Q    
Sbjct: 77  EAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRG 136

Query: 134 AAAGSYGGLRP-PFPPPQLIFPQYRYRSYAPNY----HQAIYNPQLQQPQLYQQSPSSSP 193
           +  G+Y   +P P+   Q +   Y   +Y P Y     Q +Y+P + Q  L       + 
Sbjct: 137 SLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVPGAV 196

Query: 194 SSSSYYYGY-------GYGYSS--SSSQPPRGAFSVHGHTPSSPLSSS 220
           +S  Y YG        G+GY++    S P      + G T S+  +SS
Sbjct: 197 NSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSS 243

[Close]

BLAST of Lsi08G009710 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-34
Identity = 105/259 (40.54%), Postives = 137/259 (52.90%), Query Frame = 0


Query: 14  PFASDTTWTKLFVGGLAWETQSHEMHTFFQQFGDILEAVIIQDKHTRKSKGYGFVTFKDP 73
           PF  DTT+TK+FVGGLAWETQS  +   F Q+GDILEAV+I DK+T +SKGYGFVTF+DP
Sbjct: 17  PF-GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDP 76

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPP--------------PPSPSHGGRNQIGN 133
           E+ARRAC +P PII GRRANCN+A+ GR RPP              PPSP       +G+
Sbjct: 77  EAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP------YVGS 136

Query: 134 LQSTTPAAAGSYGGLRPP-FPPPQLIFPQYRYRSYAPNY----HQAIYNPQLQQPQLYQQ 193
           +QS      GS+   +PP +   Q +   Y    Y P+Y     Q  Y P + Q  L   
Sbjct: 137 VQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQVY 196

Query: 194 SPSSSPSSSSYYYG---------YGYGYSSSSSQPPRGAFSVHGHTPSSPLSSSPSYFPY 245
               + +S  Y YG         +GY      S P      +     +SP+S+  S +P 
Sbjct: 197 GVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGA---TSPMSAIQSPYPS 256

The following BLAST results are available for this feature:

BLAST of Lsi08G009710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.9e-22	37.60	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q62176	1.4e-20	37.32	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q6DIV4	2.3e-20	38.54	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]
Q7T3I7	3.1e-20	38.54	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2	[more]
Q6P8A7	4.0e-20	37.97	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]

BLAST of Lsi08G009710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBB0	5.6e-134	88.65	RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1	[more]
A0A0A0LLP2	1.8e-132	88.26	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV...	[more]
A0A6J1HBU2	1.3e-103	74.22	RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HBJ1	1.9e-97	72.08	RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KAW8	3.9e-95	71.28	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=...	[more]

BLAST of Lsi08G009710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444844.1	1.2e-133	88.65	PREDICTED: RNA-binding protein 38-like [Cucumis melo]	[more]
XP_038884547.1	4.4e-133	89.64	RNA-binding protein 38-like [Benincasa hispida]	[more]
XP_004152633.3	7.5e-133	88.61	RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_...	[more]
XP_023546076.1	2.1e-103	74.56	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961976.1	2.8e-103	74.22	RNA-binding protein 38-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Lsi08G009710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.2	2.9e-50	48.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	1.1e-49	47.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.0e-39	43.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	2.8e-37	44.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.0e-34	40.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..95 e-value: 1.7E-22 score: 90.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 24..82 e-value: 1.2E-16 score: 60.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..99 score: 15.562085
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..116 e-value: 8.7E-24 score: 86.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..128
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 17..261
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 22..97 e-value: 9.43631E-39 score: 128.502
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 17..261
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G009710.1	Lsi08G009710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding