Lsi08G009260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G009260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-type domain-containing protein
Location	chr08: 17650994 .. 17651491 (+)
RNA-Seq Expression	Lsi08G009260
Synteny	Lsi08G009260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCGCCCATTCCCCTTCCACCGCCGCCACCCCTGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCTTGCATTCACGTCAAATCCTCCCGCCCTCGCTCTAGATCCTCTACCTCTCTCCCTTCTCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTAGTCCTCGGAGAGAGTCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAACCCTACGATTCTCTCCGCTGCATTCCCGATTGTCGCCATTGTTTTCACTCCGATTGCGTCGATGAATGGCTACGTGTGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCGACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA

mRNA sequence

ATGTCCTCCGCCCATTCCCCTTCCACCGCCGCCACCCCTGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCTTGCATTCACGTCAAATCCTCCCGCCCTCGCTCTAGATCCTCTACCTCTCTCCCTTCTCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTAGTCCTCGGAGAGAGTCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAACCCTACGATTCTCTCCGCTGCATTCCCGATTGTCGCCATTGTTTTCACTCCGATTGCGTCGATGAATGGCTACGTGTGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCGACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCCATTCCCCTTCCACCGCCGCCACCCCTGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCTTGCATTCACGTCAAATCCTCCCGCCCTCGCTCTAGATCCTCTACCTCTCTCCCTTCTCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTAGTCCTCGGAGAGAGTCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAACCCTACGATTCTCTCCGCTGCATTCCCGATTGTCGCCATTGTTTTCACTCCGATTGCGTCGATGAATGGCTACGTGTGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCGACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA

Protein sequence

MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR

Homology

[Close]

BLAST of Lsi08G009260 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-50
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 14  AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSS---TSLPSPAADNVVVLM 73
           +GVGLGYGIAIAVSILV IS IML SY CI  KS+     +S     LPSPAA+    + 
Sbjct: 9   SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VK 68

Query: 74  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDE 133
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + +RCIP+C HCFH+DCVDE
Sbjct: 69  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 128

Query: 134 WLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           WLR SATCPLCRNSPAP+ +ATPLS+ VPLA   R
Sbjct: 129 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Lsi08G009260 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 67/155 (43.23%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 17  GLGYGIAIAVSILVFISTIMLVSYACIHVK-SSRP--RSRSSTSLPSPAADNVVVLMVGL 76
           G  YGI +++ +L+ I+TI L SY C   + SS P   ++ ST +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 77  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYKPYDSLRCIPDCRHCFHSDCV 136
           D   I+SYPK++  E++       GP     C+ICL DYK    LR +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 137 DEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASN 164
           D WLR++ TCP+CR SP PTP++TPL+E VPLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of Lsi08G009260 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 0


Query: 17  GLGYGIAIAVSILVFISTIMLVSYACI--HVKSS---RPRSR-----SSTSLP------- 76
           GL YGI +++ IL+ I+TI L SY C   H+ +S    PR+R     S+ +LP       
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 77  --SPAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYKPYDS 136
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DYK  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 137 LRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLA 162
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP+++ VP +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Lsi08G009260 vs. ExPASy Swiss-Prot
Match: P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-25
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 65  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYKPYDSLRCIPDCRHCF 124
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   +++RCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 125 HSDCVDEWLRVSATCPLCRNSPAP 148
           HS+C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]

BLAST of Lsi08G009260 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-24
Identity = 68/174 (39.08%), Postives = 96/174 (55.17%), Query Frame = 0


Query: 16  VGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTS-------LPS----PAAD 75
           +G GY IAIA+  LV +ST++L SY C      R  +  ST        LP        D
Sbjct: 33  LGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEED 92

Query: 76  NVVV----LMVGLDGSIIESYPKLVLGESRRLPAPN------HGPCSICLSDYKPYDSLR 135
           N  +    ++VGLD ++I SYPK    +     + +         CSICL +YK  + LR
Sbjct: 93  NEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLR 152

Query: 136 CIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAP----TPVATPLSEFVPLASNA 165
            +P+C+H FH  C+D WL+++ +CP+CRNSP P    TP++TPLSE VPL+  A
Sbjct: 153 MMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQYA 206

[Close]

BLAST of Lsi08G009260 vs. ExPASy TrEMBL
Match: A0A6J1K4J2 (putative RING-H2 finger protein ATL69 OS=Cucurbita maxima OX=3661 GN=LOC111492227 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 146/168 (86.90%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 2   SSAHSPSTAATP--AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS--RPRSRSSTS 61
           SS+ S S AA+P  AGVGLGYGIAIAVSILVFISTIMLVSYACI  KS+  RPR R S  
Sbjct: 11  SSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPSAP 70

Query: 62  LPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIP 121
           LP PAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDY+PYDS+RCIP
Sbjct: 71  LPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIP 130

Query: 122 DCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           DCRHCFHS CVDEWLR+SATCPLCRNSPAPTPVATPLSEF PLASNAR
Sbjct: 131 DCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Lsi08G009260 vs. ExPASy TrEMBL
Match: A0A6J1HD62 (putative RING-H2 finger protein ATL69 OS=Cucurbita moschata OX=3662 GN=LOC111462423 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.7e-73
Identity = 145/170 (85.29%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 2   SSAHSPSTAATP--AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS----RPRSRSS 61
           SS+ S + AA+P  AGVGLGYGIAIAVSILVFISTIMLVSYACI  KS+    RPR R S
Sbjct: 12  SSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPS 71

Query: 62  TSLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRC 121
             LP PAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDY+PYDS+RC
Sbjct: 72  APLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRC 131

Query: 122 IPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           IPDCRHCFHS CVDEWLR+SATCPLCRNSPAPTPVATPLSEF PLASNAR
Sbjct: 132 IPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181

[Close]

BLAST of Lsi08G009260 vs. ExPASy TrEMBL
Match: A0A1S3BCM0 (putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 147/170 (86.47%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS-RPRSR-SSTSL 60
           MSSAH PS+ AT  GVGLGYGIAIAVSILVFIST+ML+SYACI VKSS RPR R S+ SL
Sbjct: 1   MSSAHPPSSPAT--GVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPSANSL 60

Query: 61  PSPAA---DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRC 120
           PSP A   DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDYKP+DS+RC
Sbjct: 61  PSPPAATVDNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRC 120

Query: 121 IPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           IPDCRHCFHSDCVDEWLR+SATCPLCRNSPAPTPVATPLSEFVPLAS+AR
Sbjct: 121 IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Lsi08G009260 vs. ExPASy TrEMBL
Match: A0A5A7V8V8 (Putative RING-H2 finger protein ATL69 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00990 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 145/170 (85.29%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS-RPRSR-SSTSL 60
           MSSAH PS+ AT  GVGLGYGIAIAVSILVFIST+ML+SYACI VKSS RPR R ++ SL
Sbjct: 1   MSSAHPPSSPAT--GVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPNANSL 60

Query: 61  PSPAA---DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRC 120
           PSP A   DNVVVLMVGLDGSI ESYPKLVLGESRRLP PN+GPCSICLSDYKP+DS+RC
Sbjct: 61  PSPPAATVDNVVVLMVGLDGSIFESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRC 120

Query: 121 IPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           IPDCRHCFHSDCVDEWLR+SATCPLCRNSPAPTPVATPLSEFVPLAS+AR
Sbjct: 121 IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Lsi08G009260 vs. ExPASy TrEMBL
Match: A0A0A0KFY2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 137/167 (82.04%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPS 60
           MSSAH PS+ AT  G+GLGYGIAIAVSILVFIST+ML+SYACI VKS+   +R S SLPS
Sbjct: 1   MSSAHPPSSPAT--GLGLGYGIAIAVSILVFISTVMLISYACIRVKSA--TTRPSASLPS 60

Query: 61  P--AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPD 120
           P    DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDYKP+DS+RCIPD
Sbjct: 61  PPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPD 120

Query: 121 CRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           CRHCFHSDCVD+WLR+SATCPLCRNSPAPTP+ATPLSE VPLAS+AR
Sbjct: 121 CRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]

BLAST of Lsi08G009260 vs. NCBI nr
Match: XP_038886569.1 (putative RING-H2 finger protein ATL69 [Benincasa hispida])

HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MSSAHSPSTAAT--PAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS--RPRSRSST 60
           MSSAH PS+++T  P GVGLGYGIAIAVSILVFIST+MLVSYACI VKS+  RPR R S 
Sbjct: 1   MSSAHPPSSSSTTAPTGVGLGYGIAIAVSILVFISTVMLVSYACIRVKSARPRPRPRPSA 60

Query: 61  SLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCI 120
           SLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCI
Sbjct: 61  SLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCI 120

Query: 121 PDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           PDC HCFHSDCVDEWLR++ATCPLCRNSPAPTPVATPLSEFVPLAS+AR
Sbjct: 121 PDCCHCFHSDCVDEWLRMNATCPLCRNSPAPTPVATPLSEFVPLASSAR 169

[Close]

BLAST of Lsi08G009260 vs. NCBI nr
Match: XP_023546361.1 (putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 145/166 (87.35%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 2   SSAHSPSTAATP--AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLP 61
           SS+ S + AA+P  AGVGLGYGIAIAVSILVFISTIMLVSYACI  KS+RPR R S  LP
Sbjct: 9   SSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPSAPLP 68

Query: 62  SPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDC 121
            PAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDY+PYDS+RCIPDC
Sbjct: 69  PPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDC 128

Query: 122 RHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           RHCFHS CVDEWLR+SATCPLCRNSPAPTPVATPLSEF PLASNAR
Sbjct: 129 RHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 174

[Close]

BLAST of Lsi08G009260 vs. NCBI nr
Match: XP_022997272.1 (putative RING-H2 finger protein ATL69 [Cucurbita maxima])

HSP 1 Score: 285.4 bits (729), Expect = 3.1e-73
Identity = 146/168 (86.90%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 2   SSAHSPSTAATP--AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS--RPRSRSSTS 61
           SS+ S S AA+P  AGVGLGYGIAIAVSILVFISTIMLVSYACI  KS+  RPR R S  
Sbjct: 11  SSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPSAP 70

Query: 62  LPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIP 121
           LP PAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDY+PYDS+RCIP
Sbjct: 71  LPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIP 130

Query: 122 DCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           DCRHCFHS CVDEWLR+SATCPLCRNSPAPTPVATPLSEF PLASNAR
Sbjct: 131 DCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Lsi08G009260 vs. NCBI nr
Match: KAG6598654.1 (putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 284.3 bits (726), Expect = 6.9e-73
Identity = 145/168 (86.31%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 2   SSAHSPSTAATP--AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS--RPRSRSSTS 61
           SS+ S + AA+P  AGVGLGYGIAIAVSILVFISTIMLVSYACI  KS+  RPR R S  
Sbjct: 11  SSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPSAP 70

Query: 62  LPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIP 121
           LP PAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDY+PYDS+RCIP
Sbjct: 71  LPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIP 130

Query: 122 DCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           DCRHCFHS CVDEWLR+SATCPLCRNSPAPTPVATPLSEF PLASNAR
Sbjct: 131 DCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Lsi08G009260 vs. NCBI nr
Match: KAG7029595.1 (putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 145/170 (85.29%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 2   SSAHSPSTAATP--AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS----RPRSRSS 61
           SS+ S + AA+P  AGVGLGYGIAIAVSILVFISTIMLVSYACI  KS+    RPR R S
Sbjct: 11  SSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPS 70

Query: 62  TSLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRC 121
             LP PAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDY+PYDS+RC
Sbjct: 71  APLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRC 130

Query: 122 IPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           IPDCRHCFHS CVDEWLR+SATCPLCRNSPAPTPVATPLSEF PLASNAR
Sbjct: 131 IPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180

[Close]

BLAST of Lsi08G009260 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 200.7 bits (509), Expect = 9.3e-52
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 14  AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSS---TSLPSPAADNVVVLM 73
           +GVGLGYGIAIAVSILV IS IML SY CI  KS+     +S     LPSPAA+    + 
Sbjct: 9   SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VK 68

Query: 74  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDE 133
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + +RCIP+C HCFH+DCVDE
Sbjct: 69  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 128

Query: 134 WLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           WLR SATCPLCRNSPAP+ +ATPLS+ VPLA   R
Sbjct: 129 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Lsi08G009260 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 8.5e-29
Identity = 67/155 (43.23%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 17  GLGYGIAIAVSILVFISTIMLVSYACIHVK-SSRP--RSRSSTSLPSPAADNVVVLMVGL 76
           G  YGI +++ +L+ I+TI L SY C   + SS P   ++ ST +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 77  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYKPYDSLRCIPDCRHCFHSDCV 136
           D   I+SYPK++  E++       GP     C+ICL DYK    LR +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 137 DEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASN 164
           D WLR++ TCP+CR SP PTP++TPL+E VPLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of Lsi08G009260 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 0


Query: 17  GLGYGIAIAVSILVFISTIMLVSYACI--HVKSS---RPRSR-----SSTSLP------- 76
           GL YGI +++ IL+ I+TI L SY C   H+ +S    PR+R     S+ +LP       
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 77  --SPAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYKPYDS 136
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DYK  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 137 LRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLA 162
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP+++ VP +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Lsi08G009260 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 20  YGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPSPAADNV-------VVLMVG 79
           Y IA+   I   +    L  +    + S   R R    +P+P  +N         V+++G
Sbjct: 246 YAIAVGAGIPGALIVFGLFCFVYSKISSCIKRRR---LVPTPEINNAQAHYLHSSVIVMG 305

Query: 80  LDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWL 139
           LDG  IESYPK+VLGES+RLP  +   C+ICLS+Y+P ++LR IP C+HCFH+DC+DEWL
Sbjct: 306 LDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADCIDEWL 365

Query: 140 RVSATCPLCRNSP 146
           +++ TCP+CRNSP
Sbjct: 366 KLNGTCPVCRNSP 375

[Close]

BLAST of Lsi08G009260 vs. TAIR 10
Match: AT2G46495.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-26
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 65  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYKPYDSLRCIPDCRHCF 124
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   +++RCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 125 HSDCVDEWLRVSATCPLCRNSPAP 148
           HS+C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

The following BLAST results are available for this feature:

BLAST of Lsi08G009260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL42	1.3e-50	65.16	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q8RX29	1.2e-27	43.23	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	1.6e-27	40.83	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
P0CH01	5.5e-25	59.52	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]
O82353	6.1e-24	39.08	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]

BLAST of Lsi08G009260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4J2	1.5e-73	86.90	putative RING-H2 finger protein ATL69 OS=Cucurbita maxima OX=3661 GN=LOC11149222...	[more]
A0A6J1HD62	5.7e-73	85.29	putative RING-H2 finger protein ATL69 OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]
A0A1S3BCM0	1.7e-72	86.47	putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE...	[more]
A0A5A7V8V8	1.1e-71	85.29	Putative RING-H2 finger protein ATL69 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0KFY2	2.5e-68	82.04	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 P...	[more]

BLAST of Lsi08G009260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886569.1	7.8e-77	88.76	putative RING-H2 finger protein ATL69 [Benincasa hispida]	[more]
XP_023546361.1	2.1e-74	87.35	putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo]	[more]
XP_022997272.1	3.1e-73	86.90	putative RING-H2 finger protein ATL69 [Cucurbita maxima]	[more]
KAG6598654.1	6.9e-73	86.31	putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7029595.1	1.2e-72	85.29	putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of Lsi08G009260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07040.1	9.3e-52	65.16	RING/U-box superfamily protein	[more]
AT2G35910.1	8.5e-29	43.23	RING/U-box superfamily protein	[more]
AT5G06490.1	1.1e-28	40.83	RING/U-box superfamily protein	[more]
AT5G53110.1	1.1e-28	45.11	RING/U-box superfamily protein	[more]
AT2G46495.1	3.9e-26	59.52	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 100..141 e-value: 6.3E-5 score: 32.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 100..142 e-value: 5.5E-12 score: 45.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 100..142 score: 12.25323
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 67..147 e-value: 4.3E-19 score: 70.0
None	No IPR available	PANTHER	PTHR46279:SF19	RING-H2 FINGER PROTEIN ATL69-RELATED	coord: 19..147
None	No IPR available	PANTHER	PTHR46279	RING/U-BOX SUPERFAMILY PROTEIN	coord: 19..147
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 99..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G009260.1	Lsi08G009260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane