Lsi08G009160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G009160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr08: 17545730 .. 17552232 (+)
RNA-Seq Expression	Lsi08G009160
Synteny	Lsi08G009160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGTATAGAATCAATGCAATATCATTGTGACAAGAAATAAAGCTATCTTGGAGTCATCATTGGTTGAGAAAACCCTTGTGTTTAACCTATAAAATTAAGTTAGATGCTTTTGAAATTTCTATTGTGCTATGTAATTACATGTTAATCTATGGGTGCTTTGTGCCTATTTTCTTGCCACCATTATTTGCTATCAAATCAACTCTTTTTTCTCTCTATTTTTGAGTGACCATATAAATATCATTTGACATTTGAGGTGAGGGATCATTTAACATTGTTATCAGGTATGTTATTCTTCAACAACAACATGGCATTGCTGAGAGATGTCTCTATTAACTTCCATCTTATCAAGCACATCAAGTCAAACAAAGTATCATATATGTCTACTATCTTTGACATTAGTCATTAACTACTTCTCAATTCATATACAAATCATTACTCTATCTAAAACTCTCACCGGGTGTTTGGCCTACAAAGTCTGGAGAGTAGAGTTGTGAATTTCACTCTTTGTTTGACTTCAGGAGTTCGTGGGCTCTACGACTAACAAGCATCTGTTTTATACCTTACTAACTCCTTACACTGTGACTCTGGAGTTCATGAGAATCACATCTCTTTTATGAGACAATGATCTCATTCGATAAGAAGTCGTACTCATAAAGGGATTTAACAACAAACAGACGTTTCACTCTCTCGTGCGTGTGAAAGTTGTTTCAACATCAAAAGCATATCATTTGTTGGTGTGTAAACACTCAAATGATTGGCATGAAAATACAACATTGTCATGAAAAGGGGCATTATTGTTGATGTGATAAATAAAAAATTCTCGGATATCAACGGACATGAATACCCTAGTGAATTAGAAATTAGGAATCATTTGTCTATGTGAACTCCCAATTCTCAAATACTTATATTTAATGCTCTAAATCAATTAGATTTCAAACTTGGGCTCTGACATCGAAAGACATGAATGCCCTAGTGAATTAGAAATTAGAAATCTTTCCTCTATGTGAACTCCCAATTCTTAAATACTTAAGGCTCTAAATCTATTAGATTTCAAACTTAAGAATTGGGTTAAACACGTAAAAGCTTTTTGTCCAAGATTAAGATGATATATTCTACTTGAAAGTTCTCGACATGCAATTCAAGACATGAAATTCAAAAAGGATTTAGGTCTTGGGGTTTTCGATTTTTCTTTTTCGTTTTAATAGATGGCGAGAGAAACAAAAATGAGGGGTTTAAAACTTTTTTCATTTCGTTCTTGCTATTTTAAACAAAAAATTTCTTTTAGTGATGTAGTAATATGTTGTTTAAAAGTTATTTACTTTTTGTGACTCAGATTAACATGTCACAAATACTTTTAATAACGTTGGGTTAAATTCTATTGTCAATAATTGTTTTTTGCGACATGTTTTCTCCCGCATCAATATAAATTAGTATTTAACAACAAAATTTAGCTACATCGCTAAAAGTAAATTTTCATATAGTGAGTTATTAACTAAACTTGAAAAGAAAGAAACACAAAAATTAAAACTTATTTTATCGTTAAAACAGACAAAAATATCCATACTTAATATGCCATAAAAAAAATAAACTTGAAAACCAATAAAATTACATAAAAATTATTAAATAAAATATAAATAATAAATTGGTGTGGTTGACTGTTCATAAAAGAAACCAAAAAGAAAAGCTCTTCTAGAAAAAGGGAAGAATAAGAAAAGAATATTGCATGGTGTGGATGATGCAAACATTTATGAAATCTTTTCTTTATGTTAAGAGGAAATGACAAAACCAACCCAAATGGTGTGAGGTCCCTAAAAATAAATATAAAAAAAATAAAATAAAAAAATTGCCTTGTCTTTACTAGGATTTATATGCAAACAGAAAAAGCCATTGATACAGCTTTCTAATGCAAAGAGATGGGTGTTGTAGCCATAACTTTGTTATGTCTCTTACTCTCCAATCAACAGATGCAGTCTCAGCCATTGCTCGATTACCGAGGTTCGTGTTATTTAACGTGTTTAGTGATAATCTAAGTATGTTTGATTAGTGATATGAAAATAGAAATTTGAAAACAAGTGGTTGAAAAACATTGTATTCCAATTTATGTGTTCTTCAAAATTTTCCGAAATGTGTTTGATAACATATTTAAAAATCATAAAATAATTGTAGTAACAAATACTATTATTAATTTGTTTATTATGTTTTATGTTATAAATTTCACATGATTATTATTTTATAAAATATCAATATAATGTATTATATTAATACATTATTTTACTTTAACGAAAAAAAAAGTTTATAACGTGAAATACAAGTTTTTAACTTCTTCTTCTCTTGAGAAAACAAGTTTTAATCTTTTTTTTTAATATAATTTTACAATTTATATTTTCTAATTTAAAATCAACGTACACTTAAAAACTTTTTTTTTTTTTTTTTGGTAAATTACCCATTTGGTTTCTATAGTATAAAGAAAGTTAGAATTATTCCGTTTATGTAAAAGTTAAAATTTAGTTCTTTGATAAAATCTCATAAATAGTCTATATGGTTGGATAAAATTCTCTAAGAAATTCTCTAAAGGACTATTTATGATAATTTTATCAAACTATAGAAAACAAATTTTAACTTTTTCCAAACTATAGGGACCAAATTTACAAGAAAAATACTTAGGTGCATCTCGAGTAGCACCTATCTTTGTGCACCCCACCAAATTGTCCAGTCATACTTTGACACATGGTAAATTCTTCTTATTTATTTCGTGTAGTATTTTAATTATCTTTTGGTGTGAGTGATGATAGTAGGATGCACAGACATGAGTGTATCTGGGAATACAACAAAGTATTGCTCAATTTACAATTTTGCTTCCTGACTTCGCTTAGCAAATACCTCGTCGAGACTTCGTCAATCTCGGGATAGTAATTTTAAAACATAAATTCCAAAAACAATAATACACAACATATATTCGTTAATAATCCATTTATTAATGTGAATCTGAAAACATAAAATAAAATTTAGATGAAATATGCTTTAACATCTTCCTCTCTCTCTCATTATTACATTTTGACAAATTTTTGTTTTTAATTAATTAAATGTGTTATGAATTGGGTGAGTGAGCAGTTGCTGAGGTTGATGATTTGGTTGATTTAGAACTGCCAAGGAAGCTCAGAATCTCAAAGGAACTGTCTGTCTGTATAACACACAAATTCCATTAATACCCCCCAACTTCCTTTGTTTTTAATTTCCATTTTTATCAATCAATTATTAGCAACCCCAATTTTCATTTTTTTCTTCATATATACATTTGCAGACTAAATTATTGCATAATGAAACCGGTGACCGAAGCCGATGCCGATCAATTAGAGATGAGAATGAAGATGAAGATGATCTATTGGAGCACTTTGCAATGGATTATAGCAGCGTACGACGTCGTCGGATCCATAATATGTCTTCACAACATCCTTAATATTGAAAAATTAAGACCCTCTCCTTTCGCATAATTCTATTGCAATGTTCGGTTAAATTACAAGTTTAGTTTCATATGACATTTCATGTTCTAGTCAAACAGATTCTAAATTCGCATAATTCTATTGCAATGTTCGGTTAAATTACAAGTTTAGTTTCATATGACATTTCATGTTCTAGTCAAACAGATTCTAAACTTTATAAATGAGTCTATGAACTTTAAGAATTGTCTAACAAGTTTTTCAATTTTCGATTTTCTATATAATAAAAGTTTTAAAACTTTTAATTTTATGCGTACTGTCAAATAAGTACTTGATATATTACCTTTCACTTCTGTCCTGGAAGAATAACGGGTCGATTCTCCTGAGTTCAATAATACCCGTTGAGTAGGCCTCGTCCTAACAACCACTTTTGTTTTAGTTATTTTTTCAAAAATATTAATTATGTTGACATGATCGTTTTAAAATTCACGAAAGTATTGAATATATGATTGAATGTTTATCAGACCTAAAGAATTGTCTAAAATAACTAAAACAAAAGTAATTCTATATCTAATAAAACTAAACAAAATAACTAAAACAAAAGTAATTCTATATCTAATAAAACTAAACAAAAGTGGTTGTTAGACGAGGCCTACTCAACGGTTATTATTGAGCTCAGGAGAACCGACCCGTTATCCTTCCACCGACAGAAGCGGAAGGTAAACGCTGCTCTGTGAAACCAGCCTCACGCGGTGTCCTAAACTTTATGGGCAATGGAATCTGGGCTTCCGCCAAGAGCCCAAAGCCATACTTCTTACTTGGAATGGGCGGGCCAGTATATTTCTACAAAGAACTCTACCCGATGGGCCGTGCCCGCTTCCAACCACTTCATTGCCCTCATACGAGTTACAAGCCCACATTACCGAGCTCGGCGATAGCAGAAGTTACAAGGCGCTATATGAAGACTATGCTTAACTACAAATCTAGCGATGTGGGACTTCTTGGGGATTTCATTAATTTGAATTATCTATGTAAAATCTATTGCATATATTATGTTCGAATTACCTCTTAGATTCCTTTTTTTTATATGTACTTGAATACTCCTTTTTCACATCGTGTTTATGAGCATTAAGTTGAAACCCAAATTATAATTAAATGTGTAAATTGTTGATGTTATATATGTCCTTGATCCAACAATATTTGGGTGCTAAAAATACTTGTAAGTTATTAATTCTAGGTAGGTAGTCACTAACAAGGACGAAAATATCGTTATCGATGTAAATATCAATAACTCAAATTTATGGATAGAAAAATCACGGATATCACAAAAATTTAAAAAAATATTGTGGAATTTTTAGTGAAATTTTAGAACAAACTTATTTATGCAATAAATTATAACTTTAAAGCATATAAAACAATAATTATAAGCCAAATATGATTGGTAACAGAATAATAGATTTAGTGAAGACCGAAAAATGATTATGAAATGAATATTTCATTAATCAAATGGAAGGCCAAATACAAGATTCAATAATCAATTTGAGCATCATCATGTGTGGATCTTCTATGAATATGTAAGGTTTTCCTATTGTTTCATTGGAGGTGAAATGACTTGAAATTTCAATGCAAAAGTTTGAATGAGGTTAGAAATTAATATATGTTAATTTTTTCAATTTTTTTTTATGAAAAATTTTGGATGGTGAAGTAAGCAAAACTTACATCAATTCAGTTTTGAGGTGAAATAGTGTGAAAATTCAGTAGAAAAAGTTTGAATCAGGACATAAATTAATATATATTATTTTTCTTGGAAATGGAAATTTTGAATGGCCAAGTAAGCAAGACTCGCATCAATTTAATTTTGAAGTGAAATGATGTGAAAAATTCAACGGAAGAATGATGTTAAAAATAAATATATGTTATTTTTTGTGGTTTTTACAAATTCAATTTCTTTTGGAAAATGTAAGTCTTGGATTTAAAATTGAGAAAAGTTTAAAATTTGAAAAGATAACATATTGGAAAAGGTTGATATTGAAAAAAGAAAAAAAAACGATATATGAAGATTTTTCCACGATATCTCCACTAAATATCCACGATAAGTTGTCAAAATATCCACAATTGTCATGATCTACAAACGAAATATCCTTTAAACAATATATCTCTAATATCGACAATTTTTCGAAAAAAAAGAACTTACCTCCCATATCTCTGTCGGATATGTCAATTTATGGATATATCGCGATTTTTTCAATCCTTGGTCACTACTCACTACCATGGAATTGTTGATGCTATATTTATATATTATTTTCTTTTTTGACATCTTAGATGTTCATGTCAGTTTACGCGCATCTCAATTTTAGTCTCTCTACTTTCAATTATTCAATTTTAGTCTATCTATTTTTTATAAATCTAATTCTTTTTTGAAAAAGAAAAGAAAAAAAAGGAAAAAATCTAATTTCTTTTTTTAAAAAATAAAATTATAATTAGGTTCAATTTTAGCCTCTCTACTTTCCGTTATCCAATTTTAGTCCATCTATTTTCTATAAATCTAATTCTAAAAGAAAAAATCTAATTTCTTTTAAGAAAAGGAAAAAAAAAATCTTTTAAAAAAAAAAGGAAAAAGAAAAGAAAAAGTGGATGTTAGGCGGTGTCAACCATCTTTAAGAACAATCACTTTTGGGCTTTCACCCTAAGTCGGAGGCCCACTCCCGACTTGAGATGGGTAGGCCCAGTGATATTTTCCAAAAGACCTTCCCCCCAGTGAGCCGAGCCCACAATCCAACAACTTCAAGTCACAAGCCCACATTACCGAGGTCGTCGATAGCACGTGCTAGCAGCCACTTCATGAAGACTACGCCCAATTAACTTCTAGCGATGTGGAATTTCTTCTATGAAAAATCTATTGCATTTTGTGTTCAAATATTTACCTCTTATAATTTTTGCTTGGGTACTAATTTTTTTTCTCTATATCGTGTTTATCAGCATTATGGTGAAAACTCAAATGGGAATCTCAACTATTCTCACGAGGACGATCTACTTGATCCGGCAACATTTTGGTGTTAA

mRNA sequence

ATGAAGACTAAATTATTGCATAATGAAACCGGTGACCGAAGCCGATGCCGATCAATTAGAGATGAGAATGAAGATGAAGATGATCTATTGGAGCACTTTGCAATGGATTATAGCAGCGAGAACCGACCCGTTATCCTTCCACCGACAGAAGCGGAAGGTAAACGCTGCTCTGTGAAACCAGCCTCACGCGGTGTCCTAAACTTTATGGGCAATGGAATCTGGGCTTCCGCCAAGAGCCCAAAGCCATACTTCTTACTTGGAATGGGCGGGCCAGTATATTTCTACAAAGAACTCTACCCGATGGGCCGTGCCCGCTTCCAACCACTTCATTGCCCTCATACGAGTTACAAGCCCACATTACCGAGCTCGGCGATAGCAGAAGTTACAAGGCGCTATATGAAGACTATGCTTAACTACAAATCTAGCGATCATTATGGTGAAAACTCAAATGGGAATCTCAACTATTCTCACGAGGACGATCTACTTGATCCGGCAACATTTTGGTGTTAA

Coding sequence (CDS)

ATGAAGACTAAATTATTGCATAATGAAACCGGTGACCGAAGCCGATGCCGATCAATTAGAGATGAGAATGAAGATGAAGATGATCTATTGGAGCACTTTGCAATGGATTATAGCAGCGAGAACCGACCCGTTATCCTTCCACCGACAGAAGCGGAAGGTAAACGCTGCTCTGTGAAACCAGCCTCACGCGGTGTCCTAAACTTTATGGGCAATGGAATCTGGGCTTCCGCCAAGAGCCCAAAGCCATACTTCTTACTTGGAATGGGCGGGCCAGTATATTTCTACAAAGAACTCTACCCGATGGGCCGTGCCCGCTTCCAACCACTTCATTGCCCTCATACGAGTTACAAGCCCACATTACCGAGCTCGGCGATAGCAGAAGTTACAAGGCGCTATATGAAGACTATGCTTAACTACAAATCTAGCGATCATTATGGTGAAAACTCAAATGGGAATCTCAACTATTCTCACGAGGACGATCTACTTGATCCGGCAACATTTTGGTGTTAA

Protein sequence

MKTKLLHNETGDRSRCRSIRDENEDEDDLLEHFAMDYSSENRPVILPPTEAEGKRCSVKPASRGVLNFMGNGIWASAKSPKPYFLLGMGGPVYFYKELYPMGRARFQPLHCPHTSYKPTLPSSAIAEVTRRYMKTMLNYKSSDHYGENSNGNLNYSHEDDLLDPATFWC

Homology

[Close]

BLAST of Lsi08G009160 vs. ExPASy TrEMBL
Match: A0A6A1WCG3 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G015773 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 37/82 (45.12%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 43  PVILPPTEAEGKRCSVKPASRGVLNFMGNGIWASAKSPKPYFLLGMGGPVYFYKELYPMG 102
           PVILP   A G RC+VKPASR  L    +   A A+  +P   LG G PV          
Sbjct: 42  PVILPLLRAGGDRCTVKPASRFALRSRSHLTQAFAQIRQPNSQLGAGEPVVCTTNPAERA 101

Query: 103 RARFQPLHCPHTSYKPTLPSSA 125
              FQ L CPH+S+K  LPSSA
Sbjct: 102 EPLFQHLSCPHSSHKLALPSSA 123

[Close]

BLAST of Lsi08G009160 vs. NCBI nr
Match: KAB1220520.1 (hypothetical protein CJ030_MR3G015773 [Morella rubra])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 37/82 (45.12%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 43  PVILPPTEAEGKRCSVKPASRGVLNFMGNGIWASAKSPKPYFLLGMGGPVYFYKELYPMG 102
           PVILP   A G RC+VKPASR  L    +   A A+  +P   LG G PV          
Sbjct: 42  PVILPLLRAGGDRCTVKPASRFALRSRSHLTQAFAQIRQPNSQLGAGEPVVCTTNPAERA 101

Query: 103 RARFQPLHCPHTSYKPTLPSSA 125
              FQ L CPH+S+K  LPSSA
Sbjct: 102 EPLFQHLSCPHSSHKLALPSSA 123

[Close]

BLAST of Lsi08G009160 vs. NCBI nr
Match: KAG8496085.1 (hypothetical protein CXB51_009220 [Gossypium anomalum])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 41/117 (35.04%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 19  IRDENEDEDD------LLEHFAMDYSSENRPVILPPTEAEGKRCSVKPASRGVLNFMGNG 78
           + DE E ++D       L H   ++    +PVILP     G RCSVKPASR + +   + 
Sbjct: 64  VADEREKKNDGPVGASSLSHGGCEWI---KPVILPLPGVGGVRCSVKPASRFIPHSKNHD 123

Query: 79  IWASAKSPKPYFLLGMGGPVYFYKELYPMGRARFQPLHCPHTSYKPTLPSSAIAEVT 130
             A A++P     LGMG P   +     M R R    + PH  +K  LP SAI E++
Sbjct: 124 AQAYARAPWSNSWLGMGKPESDHCRTNSMNRTRVPSPYSPHLGHKLALPGSAINEMS 177

The following BLAST results are available for this feature:

BLAST of Lsi08G009160 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G009160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1WCG3	6.1e-06	45.12	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G015773 PE=4 SV=1	[more]

BLAST of Lsi08G009160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1220520.1	1.3e-05	45.12	hypothetical protein CJ030_MR3G015773 [Morella rubra]	[more]
KAG8496085.1	1.1e-04	35.04	hypothetical protein CXB51_009220 [Gossypium anomalum]	[more]

BLAST of Lsi08G009160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G009160.1	Lsi08G009160.1	mRNA