Lsi08G008940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G008940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like
Location	chr08: 17309129 .. 17310261 (-)
RNA-Seq Expression	Lsi08G008940
Synteny	Lsi08G008940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCAGCTCCAAACTCAGCAATTTTTTAGACCCTTTAACCAAAATAGTTCATTGCTGAGCAAATAATGCTTTACTTTGGAGGTAAAGATTATCTAAAAATATCATAACAGAAAAAAGGAGATGGAAGAGAAAAAAAAAGGAAGAAAAAAGGTGAATAGAGACACACTGGCACCGCCCTCTACATTCTCTTCCCCACTAGAAATCTCCATTCTCCCATCATTCCCCCTTTTTTTCTCTCTCTCTCTCTCTCTCTCTCTGGTTTTGCCACTTCTCTTAAATCCACCATATTTCTCTTCTCTTCTCTCCTCTGTTCTCTCTCAGAATCTGTGCTCATCCATGGCGGTTCTCTTGCTCTGTTATCTGATATTCTTGGCTTTCACTTCCCATTCAAGTAAGCTTCTGGGAATCTTCTTTTCCTCTTCATTTTGTTCACTGGCTTCCATTTCAAGTATTTCTGCAACTTAAAATGGGATTTTAAAGCTTTTGGAATCTTCTCTTCCTCTTCATTTCTTGGTTTTGTTCACTGGCTTCCATTTCAAGTTTTTTCTGCAGCTTAAAATGGGATTTTAAACAAGAATAGTTTAAACCCTCTGAAGGGTTTTGAAAAAATCAATAGAAATTAGAAAAGAAACTGCTGGCTTCATTTTTTTGAAGCTTCTGATAAACCCTTTTCTGGAATCTTCTTTAGGTGCAACCTATTGTATTTGTAAAGATGGACTGAGTGACCAAGCCCTTCAGAAAAGCCTGGATTATGCTTGTGGAGCTGGAGCTGATTGTACTCAAATCCTTCAAAATGGCCCTTGTTTTCAACCCAATACTGTGAAAGATCATTGTAGCTATGCTGTTAACAGCTATTTTCAGAAGAAGGGTCAGGTTCAAGGGAGCTGTGATTTTTCTGGCACTGCCATGCCTAGCCAATCTCCTCCTGGTATAAGACCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTACTCATTTTCTTCATCAACTGGTTTGTTTCTAGTTACTTAACATTTTTTGGTCTTTTCTTTTTTCTTGCGTTTTTCTTTTACAGCTGTAGCTTCTGGGTGTGTTTATCCTTCCAGTCCCAGGTACCCATTTCAATTTCTTCACTCTCTTGCCAGTTTTTGA

mRNA sequence

ATTTTCAGCTCCAAACTCAGCAATTTTTTAGACCCTTTAACCAAAATAGTTCATTGCTGAGCAAATAATGCTTTACTTTGGAGGTAAAGATTATCTAAAAATATCATAACAGAAAAAAGGAGATGGAAGAGAAAAAAAAAGGAAGAAAAAAGGTGAATAGAGACACACTGGCACCGCCCTCTACATTCTCTTCCCCACTAGAAATCTCCATTCTCCCATCATTCCCCCTTTTTTTCTCTCTCTCTCTCTCTCTCTCTCTGGTTTTGCCACTTCTCTTAAATCCACCATATTTCTCTTCTCTTCTCTCCTCTGTTCTCTCTCAGAATCTGTGCTCATCCATGGCGGTTCTCTTGCTCTGTTATCTGATATTCTTGGCTTTCACTTCCCATTCAAGTGCAACCTATTGTATTTGTAAAGATGGACTGAGTGACCAAGCCCTTCAGAAAAGCCTGGATTATGCTTGTGGAGCTGGAGCTGATTGTACTCAAATCCTTCAAAATGGCCCTTGTTTTCAACCCAATACTGTGAAAGATCATTGTAGCTATGCTGTTAACAGCTATTTTCAGAAGAAGGGTCAGGTTCAAGGGAGCTGTGATTTTTCTGGCACTGCCATGCCTAGCCAATCTCCTCCTGCTGTAGCTTCTGGGTGTGTTTATCCTTCCAGTCCCAGGTACCCATTTCAATTTCTTCACTCTCTTGCCAGTTTTTGA

Coding sequence (CDS)

ATGGAAGAGAAAAAAAAAGGAAGAAAAAAGGTGAATAGAGACACACTGGCACCGCCCTCTACATTCTCTTCCCCACTAGAAATCTCCATTCTCCCATCATTCCCCCTTTTTTTCTCTCTCTCTCTCTCTCTCTCTCTGGTTTTGCCACTTCTCTTAAATCCACCATATTTCTCTTCTCTTCTCTCCTCTGTTCTCTCTCAGAATCTGTGCTCATCCATGGCGGTTCTCTTGCTCTGTTATCTGATATTCTTGGCTTTCACTTCCCATTCAAGTGCAACCTATTGTATTTGTAAAGATGGACTGAGTGACCAAGCCCTTCAGAAAAGCCTGGATTATGCTTGTGGAGCTGGAGCTGATTGTACTCAAATCCTTCAAAATGGCCCTTGTTTTCAACCCAATACTGTGAAAGATCATTGTAGCTATGCTGTTAACAGCTATTTTCAGAAGAAGGGTCAGGTTCAAGGGAGCTGTGATTTTTCTGGCACTGCCATGCCTAGCCAATCTCCTCCTGCTGTAGCTTCTGGGTGTGTTTATCCTTCCAGTCCCAGGTACCCATTTCAATTTCTTCACTCTCTTGCCAGTTTTTGA

Protein sequence

MEEKKKGRKKVNRDTLAPPSTFSSPLEISILPSFPLFFSLSLSLSLVLPLLLNPPYFSSLLSSVLSQNLCSSMAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQPNTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRYPFQFLHSLASF

Homology

[Close]

BLAST of Lsi08G008940 vs. ExPASy Swiss-Prot
Match: Q9FZ86 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.2e-32
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAV +L  +I LA   HSS T+C+CK+GLS+  LQK+LDYACGAGADC  I Q GPCF P
Sbjct: 1   MAVFVL-VMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           NTVK HCSYAVNS+FQKKGQ  G+CDF+GTA  S S P+  + C +P+S
Sbjct: 61  NTVKSHCSYAVNSFFQKKGQSLGTCDFAGTATFSASDPSYTT-CPFPAS 107

[Close]

BLAST of Lsi08G008940 vs. ExPASy Swiss-Prot
Match: Q93V72 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.9e-28
Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           M+VLL   LI   FT +S+A YC+CK+G ++Q LQK++DYACG GADCTQI   G C+QP
Sbjct: 1   MSVLLPLCLIISMFT-YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           NTVK+HC  AVNSY+QKK     +CDF+G A PS +PP+ AS C+  SS
Sbjct: 61  NTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTASNCLTGSS 107

[Close]

BLAST of Lsi08G008940 vs. ExPASy Swiss-Prot
Match: Q9FNQ2 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-27
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MA L+L  L+ L+   HSSA++C+CK GLSD  LQ +LDYACG GADC        CF P
Sbjct: 1   MAALVLS-LLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           + V+ HC+YAVNS+FQKKGQ  GSC+F GTA P+ S P+  +GC +P+S
Sbjct: 61  DNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSY-TGCAFPTS 107

[Close]

BLAST of Lsi08G008940 vs. ExPASy Swiss-Prot
Match: Q9SD84 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-27
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 77  LLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQPNTVK 136
           L+ YL+ L    H+SA++C+CK GLSD  LQK+LDYACG GADC      G CF P+ V+
Sbjct: 4   LVLYLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVR 63

Query: 137 DHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
            HC+YAVNS+FQKKGQ   SC+F+GTA  + + P+  +GC +PSS
Sbjct: 64  AHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSY-TGCAFPSS 107

[Close]

BLAST of Lsi08G008940 vs. ExPASy Swiss-Prot
Match: Q9FZD0 (Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At1g26450 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLL  +L+   FT +S+A  C+CKD  ++  LQK +D+ACG GADC QI   G C+QP
Sbjct: 1   MAVLLPLFLLSFMFT-YSNAAVCVCKDA-NELDLQKVIDFACGGGADCAQIQTTGACYQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           NT+K+HC  AVNSY+QKK     +CDF+G A+ S SPP+  S C+  SS
Sbjct: 61  NTLKNHCDVAVNSYYQKKASTGATCDFNGAAVISTSPPSTTSSCLSSSS 107

[Close]

BLAST of Lsi08G008940 vs. ExPASy TrEMBL
Match: A0A5A7V8S9 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00670 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 9.7e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADC+QILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRY 185
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSP +
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSF 112

[Close]

BLAST of Lsi08G008940 vs. ExPASy TrEMBL
Match: A0A1S3BDH0 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC103488471 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 9.7e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADC+QILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRY 185
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSP +
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSF 112

[Close]

BLAST of Lsi08G008940 vs. ExPASy TrEMBL
Match: A0A0A0KDN8 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.8e-54
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCT ILQNGPC+QP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTPILQNGPCYQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRY 185
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTA PSQSPPAVASGCVYPSSP +
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTASPSQSPPAVASGCVYPSSPSF 112

[Close]

BLAST of Lsi08G008940 vs. ExPASy TrEMBL
Match: A0A6J1BPT8 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Momordica charantia OX=3673 GN=LOC111004672 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 7.2e-51
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MA++LLCYL+F+AFT HSSATYC+CKDG SDQALQKSLDYACGAGADCT ILQNGPCFQP
Sbjct: 1   MAIILLCYLLFMAFTGHSSATYCVCKDGQSDQALQKSLDYACGAGADCTPILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSP 183
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTA PS SPPA ASGCVYPSSP
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTATPSPSPPAGASGCVYPSSP 110

[Close]

BLAST of Lsi08G008940 vs. ExPASy TrEMBL
Match: A0A6J1HDW5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111462671 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.2e-49
Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLC+LIFLAFTSHSSA+YCICKDG SDQALQK+LDYACGAGADCT ILQNGPCFQP
Sbjct: 1   MAVLLLCHLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           NT+KDHCSYAVNSYFQ+KGQVQGSCDFSGTAM SQSPP  ASGCVY SS
Sbjct: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSS 109

[Close]

BLAST of Lsi08G008940 vs. NCBI nr
Match: KAG6598636.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-55
Identity = 110/123 (89.43%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLCYLIFLAFTSHSSA+YCICKDG SDQALQK+LDYACGAGADCT ILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRYPFQFLHSL 192
           NT+KDHCSYAVNSYFQ+KGQVQGSCDFSGTAM SQSPP  ASGCVY SS RYPFQF HSL
Sbjct: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSRYPFQFPHSL 120

Query: 193 ASF 196
           A F
Sbjct: 121 AVF 123

[Close]

BLAST of Lsi08G008940 vs. NCBI nr
Match: XP_008445454.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis melo] >KAA0064762.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 2.0e-55
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADC+QILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRY 185
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSP +
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSF 112

[Close]

BLAST of Lsi08G008940 vs. NCBI nr
Match: XP_038886488.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 3.4e-55
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCT ILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTAILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRY 185
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSP +
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSF 112

[Close]

BLAST of Lsi08G008940 vs. NCBI nr
Match: XP_004144176.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus] >XP_031742380.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis sativus] >KAE8647252.1 hypothetical protein Csa_018278 [Cucumis sativus] >KGN47648.1 hypothetical protein Csa_018913 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 3.8e-54
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCT ILQNGPC+QP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTPILQNGPCYQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPRY 185
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTA PSQSPPAVASGCVYPSSP +
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTASPSQSPPAVASGCVYPSSPSF 112

[Close]

BLAST of Lsi08G008940 vs. NCBI nr
Match: XP_022131475.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-50
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MA++LLCYL+F+AFT HSSATYC+CKDG SDQALQKSLDYACGAGADCT ILQNGPCFQP
Sbjct: 1   MAIILLCYLLFMAFTGHSSATYCVCKDGQSDQALQKSLDYACGAGADCTPILQNGPCFQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSP 183
           NTVKDHCSYAVNSYFQ+KGQVQGSCDFSGTA PS SPPA ASGCVYPSSP
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTATPSPSPPAGASGCVYPSSP 110

[Close]

BLAST of Lsi08G008940 vs. TAIR 10
Match: AT2G03505.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-33
Identity = 64/108 (59.26%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 76  LLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQPNTV 135
           LLL  L  LA T++SSATYC+C+DG+ ++ LQ S+DYACG   DC  I + GPC+QPNT+
Sbjct: 3   LLLSLLFLLALTTYSSATYCLCRDGVGEKDLQTSIDYACGVLKDCNPIHEKGPCYQPNTI 62

Query: 136 KDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQS-PPAVASGCVYPSSP 183
           K HC +AVN+YFQ+ GQ+ GSC+FSGTA  SQ+ P  V +GC+YPSSP
Sbjct: 63  KSHCDWAVNTYFQRFGQISGSCNFSGTATTSQNLPSTVVTGCLYPSSP 110

[Close]

BLAST of Lsi08G008940 vs. TAIR 10
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3 )

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-33
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MAV +L  +I LA   HSS T+C+CK+GLS+  LQK+LDYACGAGADC  I Q GPCF P
Sbjct: 1   MAVFVL-VMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           NTVK HCSYAVNS+FQKKGQ  G+CDF+GTA  S S P+  + C +P+S
Sbjct: 61  NTVKSHCSYAVNSFFQKKGQSLGTCDFAGTATFSASDPSYTT-CPFPAS 107

[Close]

BLAST of Lsi08G008940 vs. TAIR 10
Match: AT1G13830.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-31
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 76  LLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQPNTV 135
           +LL  L+ L+ T+ SSA YC+CKDG+ D  LQ S+DYACG  ADC  I   G C+QP+T+
Sbjct: 3   VLLGLLLLLSLTNSSSAIYCLCKDGIGDTELQTSIDYACGTLADCNPIHDKGTCYQPDTI 62

Query: 136 KDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPA-VASGCVYPSSP 183
           K HC +AVNSYFQ   QV GSC+FSGTA  + +PP+ +A+GC+YPSSP
Sbjct: 63  KSHCDWAVNSYFQNAAQVPGSCNFSGTATTNPNPPSNLANGCIYPSSP 110

[Close]

BLAST of Lsi08G008940 vs. TAIR 10
Match: AT1G69295.1 (plasmodesmata callose-binding protein 4 )

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-29
Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           M+VLL   LI   FT +S+A YC+CK+G ++Q LQK++DYACG GADCTQI   G C+QP
Sbjct: 1   MSVLLPLCLIISMFT-YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           NTVK+HC  AVNSY+QKK     +CDF+G A PS +PP+ AS C+  SS
Sbjct: 61  NTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTASNCLTGSS 107

[Close]

BLAST of Lsi08G008940 vs. TAIR 10
Match: AT5G61130.1 (plasmodesmata callose-binding protein 1 )

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-28
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 73  MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTQILQNGPCFQP 132
           MA L+L  L+ L+   HSSA++C+CK GLSD  LQ +LDYACG GADC        CF P
Sbjct: 1   MAALVLS-LLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNP 60

Query: 133 NTVKDHCSYAVNSYFQKKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSS 182
           + V+ HC+YAVNS+FQKKGQ  GSC+F GTA P+ S P+  +GC +P+S
Sbjct: 61  DNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSY-TGCAFPTS 107

The following BLAST results are available for this feature:

BLAST of Lsi08G008940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ86	7.2e-32	63.30	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3...	[more]
Q93V72	4.9e-28	57.80	PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4...	[more]
Q9FNQ2	2.4e-27	55.05	PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1...	[more]
Q9SD84	4.1e-27	54.29	PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2...	[more]
Q9FZD0	1.9e-24	52.29	Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Lsi08G008940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8S9	9.7e-56	96.43	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BDH0	9.7e-56	96.43	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0KDN8	1.8e-54	94.64	X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=...	[more]
A0A6J1BPT8	7.2e-51	89.09	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1HDW5	5.2e-49	89.91	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Lsi08G008940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598636.1	1.2e-55	89.43	PLASMODESMATA CALLOSE-BINDING PROTEIN 3, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_008445454.1	2.0e-55	96.43	PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis melo] >KAA00647...	[more]
XP_038886488.1	3.4e-55	96.43	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Benincasa hispida]	[more]
XP_004144176.1	3.8e-54	94.64	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus] >XP_031742380.1 PLASMO...	[more]
XP_022131475.1	1.5e-50	89.09	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Momordica charantia]	[more]

BLAST of Lsi08G008940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03505.1	3.0e-33	59.26	Carbohydrate-binding X8 domain superfamily protein	[more]
AT1G18650.1	5.1e-33	63.30	plasmodesmata callose-binding protein 3	[more]
AT1G13830.1	3.7e-31	57.41	Carbohydrate-binding X8 domain superfamily protein	[more]
AT1G69295.1	3.4e-29	57.80	plasmodesmata callose-binding protein 4	[more]
AT5G61130.1	1.7e-28	55.05	plasmodesmata callose-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 93..178 e-value: 2.2E-40 score: 150.1
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 94..164 e-value: 3.0E-21 score: 75.9
None	No IPR available	GENE3D	1.20.58.1040		coord: 67..179 e-value: 6.5E-9 score: 38.0
None	No IPR available	PANTHER	PTHR31044:SF95	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-LIKE ISOFORM X1	coord: 73..187
IPR044788	Carbohydrate-binding X8 domain-containing protein, plant	PANTHER	PTHR31044	BETA-1,3 GLUCANASE	coord: 73..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G008940.1	Lsi08G008940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018106	peptidyl-histidine phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0004673	protein histidine kinase activity