Lsi08G008680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G008680
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionendoplasmic reticulum metallopeptidase 1 isoform X1
Locationchr08: 17067645 .. 17067955 (+)
RNA-Seq ExpressionLsi08G008680
SyntenyLsi08G008680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTGTGACTGACCTGTTTATGAGACTCATGCACAGCTCTCTGTGACATGCAGGCTAAAAGTCAAGAAAAATTGAGAATCAACATCGCTGTATTGGATCAACAGTTGACAAAAGAAGTAAAGAGGTTGAAAAGTCTTTTCCCAGACTGGGTGGATGTCATTGCTTATTCCAGCTTCATGTCTACATATACCTTCTGATTCATCAGGCACTCCTCGGTTGCTATGGCTCCACAAGAGTTATAGCTGATTACGTTCGGGTTCGGGTTTTACTAGGAGTTCTTCCACCCCTCCATCCTACCAGGCTCATA

mRNA sequence

ATGCAGGCTAAAAGTCAAGAAAAATTGAGAATCAACATCGCTGTATTGGATCAACAGTTGACAAAAGAAGTAAAGAGGTTGAAAAGTCTTTTCCCAGACTGGGTGGATGCACTCCTCGGTTGCTATGGCTCCACAAGAGTTATAGCTGATTACGTTCGGGTTCGGGTTTTACTAGGAGTTCTTCCACCCCTCCATCCTACCAGGCTCATA

Coding sequence (CDS)

ATGCAGGCTAAAAGTCAAGAAAAATTGAGAATCAACATCGCTGTATTGGATCAACAGTTGACAAAAGAAGTAAAGAGGTTGAAAAGTCTTTTCCCAGACTGGGTGGATGCACTCCTCGGTTGCTATGGCTCCACAAGAGTTATAGCTGATTACGTTCGGGTTCGGGTTTTACTAGGAGTTCTTCCACCCCTCCATCCTACCAGGCTCATA

Protein sequence

MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDALLGCYGSTRVIADYVRVRVLLGVLPPLHPTRLI
Homology
[Close]
BLAST of Lsi08G008680 vs. ExPASy TrEMBL
Match: A0A5A7VBV1 (Endoplasmic reticulum metallopeptidase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00380 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++AKSQEKLRI+IAVLDQ+LT EVKRLKSLFPDWVD +
Sbjct: 825 LEAKSQEKLRIDIAVLDQKLTNEVKRLKSLFPDWVDVI 862

[Close]
BLAST of Lsi08G008680 vs. ExPASy TrEMBL
Match: A0A1S3BDK9 (endoplasmic reticulum metallopeptidase 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488498 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++AKSQEKLRI+IAVLDQ+LT EVKRLKSLFPDWVD +
Sbjct: 711 LEAKSQEKLRIDIAVLDQKLTNEVKRLKSLFPDWVDVI 748

[Close]
BLAST of Lsi08G008680 vs. ExPASy TrEMBL
Match: A0A1S3BCW5 (endoplasmic reticulum metallopeptidase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488498 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++AKSQEKLRI+IAVLDQ+LT EVKRLKSLFPDWVD +
Sbjct: 824 LEAKSQEKLRIDIAVLDQKLTNEVKRLKSLFPDWVDVI 861

[Close]
BLAST of Lsi08G008680 vs. ExPASy TrEMBL
Match: A0A6J1K8I2 (endoplasmic reticulum metallopeptidase 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492099 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.7e-07
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++A+S+EKLRI++AVLDQQLT EVKRL+SLFPDWVD +
Sbjct: 824 LEAESEEKLRIDVAVLDQQLTNEVKRLRSLFPDWVDVI 861

[Close]
BLAST of Lsi08G008680 vs. ExPASy TrEMBL
Match: A0A6J1K3X6 (endoplasmic reticulum metallopeptidase 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492099 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.7e-07
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++A+S+EKLRI++AVLDQQLT EVKRL+SLFPDWVD +
Sbjct: 798 LEAESEEKLRIDVAVLDQQLTNEVKRLRSLFPDWVDVI 835

[Close]
BLAST of Lsi08G008680 vs. NCBI nr
Match: XP_038886137.1 (endoplasmic reticulum metallopeptidase 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-08
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++AKSQE+LRINIAVLDQQLT EVKRLKSLFPDWVD +
Sbjct: 824 LEAKSQERLRINIAVLDQQLTNEVKRLKSLFPDWVDVI 861

[Close]
BLAST of Lsi08G008680 vs. NCBI nr
Match: XP_008445499.1 (PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++AKSQEKLRI+IAVLDQ+LT EVKRLKSLFPDWVD +
Sbjct: 711 LEAKSQEKLRIDIAVLDQKLTNEVKRLKSLFPDWVDVI 748

[Close]
BLAST of Lsi08G008680 vs. NCBI nr
Match: XP_008445498.1 (PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++AKSQEKLRI+IAVLDQ+LT EVKRLKSLFPDWVD +
Sbjct: 824 LEAKSQEKLRIDIAVLDQKLTNEVKRLKSLFPDWVDVI 861

[Close]
BLAST of Lsi08G008680 vs. NCBI nr
Match: KAA0064734.1 (endoplasmic reticulum metallopeptidase 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++AKSQEKLRI+IAVLDQ+LT EVKRLKSLFPDWVD +
Sbjct: 825 LEAKSQEKLRIDIAVLDQKLTNEVKRLKSLFPDWVDVI 862

[Close]
BLAST of Lsi08G008680 vs. NCBI nr
Match: XP_023546123.1 (endoplasmic reticulum metallopeptidase 1-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 6.2e-07
Identity = 29/38 (76.32%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++A+S+EKLRI++AVLDQQLT EVKRLKSLFPDWVD +
Sbjct: 735 LEAESEEKLRIDVAVLDQQLTNEVKRLKSLFPDWVDVI 772

[Close]
BLAST of Lsi08G008680 vs. TAIR 10
Match: AT1G67420.1 (Zn-dependent exopeptidases superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.2e-05
Identity = 18/38 (47.37%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++A S+E++R+++AVLDQ+L +E   LK LFP W D +
Sbjct: 824 LEASSEEEVRVDVAVLDQRLDEETIHLKGLFPKWSDVI 861

[Close]
BLAST of Lsi08G008680 vs. TAIR 10
Match: AT1G67420.2 (Zn-dependent exopeptidases superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.2e-05
Identity = 18/38 (47.37%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 1   MQAKSQEKLRINIAVLDQQLTKEVKRLKSLFPDWVDAL 39
           ++A S+E++R+++AVLDQ+L +E   LK LFP W D +
Sbjct: 874 LEASSEEEVRVDVAVLDQRLDEETIHLKGLFPKWSDVI 911

The following BLAST results are available for this feature:
BLAST of Lsi08G008680 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G008680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VBV11.0e-0781.58Endoplasmic reticulum metallopeptidase 1 isoform X1 OS=Cucumis melo var. makuwa ... [more]
A0A1S3BDK91.0e-0781.58endoplasmic reticulum metallopeptidase 1 isoform X2 OS=Cucumis melo OX=3656 GN=L... [more]
A0A1S3BCW51.0e-0781.58endoplasmic reticulum metallopeptidase 1 isoform X1 OS=Cucumis melo OX=3656 GN=L... [more]
A0A6J1K8I26.7e-0773.68endoplasmic reticulum metallopeptidase 1-like isoform X1 OS=Cucurbita maxima OX=... [more]
A0A6J1K3X66.7e-0773.68endoplasmic reticulum metallopeptidase 1-like isoform X2 OS=Cucurbita maxima OX=... [more]
BLAST of Lsi08G008680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886137.14.3e-0884.21endoplasmic reticulum metallopeptidase 1 isoform X1 [Benincasa hispida][more]
XP_008445499.12.1e-0781.58PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Cucumis melo][more]
XP_008445498.12.1e-0781.58PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X1 [Cucumis melo][more]
KAA0064734.12.1e-0781.58endoplasmic reticulum metallopeptidase 1 isoform X1 [Cucumis melo var. makuwa][more]
XP_023546123.16.2e-0776.32endoplasmic reticulum metallopeptidase 1-like isoform X3 [Cucurbita pepo subsp. ... [more]
BLAST of Lsi08G008680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G67420.16.2e-0547.37Zn-dependent exopeptidases superfamily protein [more]
AT1G67420.26.2e-0547.37Zn-dependent exopeptidases superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G008680.1Lsi08G008680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008235 metalloexopeptidase activity