Lsi08G008610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G008610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription and mRNA export factor ENY2
Location	chr08: 17031192 .. 17033663 (-)
RNA-Seq Expression	Lsi08G008610
Synteny	Lsi08G008610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTAATTCTTCAAGCTTCACTCCATGGCTATAATTGCCATGCCCTAATTTCTGCTGCGACAGGAGGGCTTCCATTAATCGGCCTCCGACGCCTGAACCGGAGGATGATCGAGAACACCACCCCACTTTTCAAGAAACAATCAACATCAAGGTCTGCAGTTTATTCGGTTCGTTTGTGTTTCTTTTTGTACGATTTTGATTGAATTTCCTTGTTTCCTCGTGTACAGCTGATTGAAAGTGGCGAAAAAGAGCGGTTGAAAGAGCTTTTGAGAGAGAGGCTCATTGAATGTGGCTGGAAAGATGAGATGAAAGCACTTTGCAGGTTTTCTCCTTTGTATTCATTCAATTCATGTATCGATTTCTTGTTTCTATTGTTTTTCTACAAATGTTTGATCAATTCCTGAACCGTTTTTTCGTCTTCAAGGGGGTTAATCGGTTGTCAGTTTAGGTATTAGTCATTAATCAACGAGAAATTGTTGAAAGACAAATGCTGGAGTGTATGGTTTGATGTGTAAAGATAGGACTGATATTAATTCAAACGGAAATTTAGAATTGATGTAGTTCTAGTTTTGTCTAAGGGTCTTTCATTAGCAATTTTGCAACTGGAGCTGTGCTATATGCTCATATTAATTCTTTCATTCCCGAGGCTAAGATCTTTGTATCTCCCTATTGCTTCTCCAGGGCATATGTAAGGAAGAAAGGAAGGAACAATGTTAGTGTTGACGACCTTGTGCAGGTCATTACTCCGAAAGGCCGAGGTTCGTTTTCATTTTCCATTTTAAAAGTGGTTGTTACTGGTTGCATTTATCATAAACTTCTGATAACATCTATCATTCAATCGCTTTCACTGCTGAAAGGATCCTTGATTTGATATGCCCTCTAACAATTACTGCATATGATGCAAGAAAACTTCATATTTATGTATCCTAGAATGGCTCTAAGTTTAAGTACTTTTATGCCACAATATGAGGTGCAACTTACTTTATCTCCATACAAATCCGATTACATTCTGACCTGCCCCTGTAAGATACATGTGCTCACCACAGTCCTTGACAACCATTACCCCATATGCTCAAAGTACTCTAATTGGTGATCTTTATTGTAATCAGCTGTAGGTGTTGGGTTTTTCCCAAATGAAATGTTTCTTTATCATATGCTCGATGTACAGTGTTTTGGTGTTGTCAAGTTAGAGGACTTTTTCTGAGCTAATGTATGAGATCACAGAAGTCAATAACAATAGGAAAGCCTTTATATTGGAAGAATTTCTTTACATCAAGTCAAATTGCAAGGAGTTAAATCGGGTTTTAGGACTTGGAGAATGATTGATAAAAATAAACATTGTCCAAAGCAATAGACCAATAATATAACTGATGAGTTATGCTTGGTTGATAGAATCATGAACTATTCAAACCTCATGGCAAATATCACTTCTTATAAATTATAAAGGTAAAAATTCCTGTTATATATGTGTGTGTGTATGTGTTTTATTATCGAGGGATATTCTGAAAATGAGTCGATAAGAACTTAGAAGAAACTCACTTTTAACACCTACCTAAGTTTGATTTTCGCACCCTTCCAAAGAACCAGCTTAACACAACGGAGAAAGAGTTGAAGTCATCAAGGGGTTTTCATTGGTTCTCATCAGGGATACCCCCAACAGTTTTAGAATTGCATCCATTATGTTACAACCGATATGTATTTTTAAAGTGCACCTAAAGGATCAACCACAAGAGGAGACCTCCATAGCCATTTGCCAATTAAACCTCCATAATGTTCCGGTTGATTTTGTGTTATTCATGTTGAAAAAGCTCTCCTATGAAAGTGAATAGTATATCATTTCAAAATGTACTTGCCATAACATTAATTTTGTCTTGCACTCTTTCTGTACTCTGTCTCAGAGATTTGTGTCTTTATTACACGTACATTTAGTCATAGACTCATAATCTTATATCATTCAACTATTCAAGTCTGCTTCTAGTTCTTGCCAAACTCGTTGCTGATTCTAGTTCGAACGATGTCATGTAGCCTCAGTTCCAGATTCAGTGAAAGCCGAGCTGCTGCAGCGCATCCGATCTTTCCTTGCATCAACAACCATCTGACATACACGATATGACTGCAAGCTGCCAAAAAGTATCTCCTTCATACCCTTACTAAACCGGCTAAAACCAATTAATCTACATTATATATGGAATTTGTTTGGACTATTTATGAAACTAGATCGATTCTGATGGAGAATCCAAGTCAAGTTCCATTTTCAGGTTATAAGGAATGTCGCATTGTGTAAGCTCGCTGTCAACAAAATTCTGGTTGGTGAGTGTTTTGTTGTAGAATGCATGTAAAAAGCTAGCTGTATGAGATTTATTTAATACTCTCATGATGACAAGTCTGTTTTTACCGAAAATTTGGTCAGTTGTAACTCTTGATTGGGTCTATTTTGATGGTATAATTATATATTTCGACTTGTTCAA

mRNA sequence

ATGGAGCTAATTCTTCAAGCTTCACTCCATGGCTATAATTGCCATGCCCTAATTTCTGCTGCGACAGGAGGGCTTCCATTAATCGGCCTCCGACGCCTGAACCGGAGGATGATCGAGAACACCACCCCACTTTTCAAGAAACAATCAACATCAAGGTCTGCAGTTTATTCGCTGATTGAAAGTGGCGAAAAAGAGCGGTTGAAAGAGCTTTTGAGAGAGAGGCTCATTGAATGTGGCTGGAAAGATGAGATGAAAGCACTTTGCAGGGCATATGTAAGGAAGAAAGGAAGGAACAATGTTAGTGTTGACGACCTTGTGCAGGTCATTACTCCGAAAGGCCGAGCCTCAGTTCCAGATTCAGTGAAAGCCGAGCTGCTGCAGCGCATCCGATCTTTCCTTGCATCAACAACCATCTGACATACACGATATGACTGCAAGCTGCCAAAAAGTTATAAGGAATGTCGCATTGTGTAAGCTCGCTGTCAACAAAATTCTGGTTGGTGAGTGTTTTGTTGTAGAATGCATGTAAAAAGCTAGCTGTATGAGATTTATTTAATACTCTCATGATGACAAGTCTGTTTTTACCGAAAATTTGGTCAGTTGTAACTCTTGATTGGGTCTATTTTGATGGTATAATTATATATTTCGACTTGTTCAA

Coding sequence (CDS)

ATGGAGCTAATTCTTCAAGCTTCACTCCATGGCTATAATTGCCATGCCCTAATTTCTGCTGCGACAGGAGGGCTTCCATTAATCGGCCTCCGACGCCTGAACCGGAGGATGATCGAGAACACCACCCCACTTTTCAAGAAACAATCAACATCAAGGTCTGCAGTTTATTCGCTGATTGAAAGTGGCGAAAAAGAGCGGTTGAAAGAGCTTTTGAGAGAGAGGCTCATTGAATGTGGCTGGAAAGATGAGATGAAAGCACTTTGCAGGGCATATGTAAGGAAGAAAGGAAGGAACAATGTTAGTGTTGACGACCTTGTGCAGGTCATTACTCCGAAAGGCCGAGCCTCAGTTCCAGATTCAGTGAAAGCCGAGCTGCTGCAGCGCATCCGATCTTTCCTTGCATCAACAACCATCTGA

Protein sequence

MELILQASLHGYNCHALISAATGGLPLIGLRRLNRRMIENTTPLFKKQSTSRSAVYSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

Homology

[Close]

BLAST of Lsi08G008610 vs. ExPASy Swiss-Prot
Match: Q6NQ54 (Transcription and mRNA export factor ENY2 OS=Arabidopsis thaliana OX=3702 GN=ENY2 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-26
Identity = 55/81 (67.90%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           L+ESGEKE L EL+R+RL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGRASV
Sbjct: 35  LVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDELIRVITPKGRASV 94

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELL RI++F+ S  +
Sbjct: 95  PDSVKAELLNRIQNFIVSAAL 115

[Close]

BLAST of Lsi08G008610 vs. ExPASy Swiss-Prot
Match: Q6DH42 (Transcription and mRNA export factor ENY2 OS=Danio rerio OX=7955 GN=eny2 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-25
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 47  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDL 106
           K+S  R+A+   LIE GE+ERLKELLR +LIECGW+D++KALC+  +++KG  NV+V+DL
Sbjct: 3   KESQMRAAINQKLIEMGERERLKELLRAKLIECGWRDQLKALCKEVIKEKGIENVTVEDL 62

Query: 107 VQVITPKGRASVPDSVKAELLQRIRSFLA 135
           V  +TPKGRA VPDSVK ELLQRIR+FLA
Sbjct: 63  VAGVTPKGRALVPDSVKKELLQRIRAFLA 91

[Close]

BLAST of Lsi08G008610 vs. ExPASy Swiss-Prot
Match: Q3ZBJ0 (Transcription and mRNA export factor ENY2 OS=Bos taurus OX=9913 GN=ENY2 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 47  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDL 106
           K +  R+A+   LIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDL
Sbjct: 8   KDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDL 67

Query: 107 VQVITPKGRASVPDSVKAELLQRIRSFLA 135
           V  ITPKGRA VPDSVK ELLQRIR+FLA
Sbjct: 68  VAEITPKGRALVPDSVKKELLQRIRTFLA 96

[Close]

BLAST of Lsi08G008610 vs. ExPASy Swiss-Prot
Match: Q9NPA8 (Transcription and mRNA export factor ENY2 OS=Homo sapiens OX=9606 GN=ENY2 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 47  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDL 106
           K +  R+A+   LIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDL
Sbjct: 8   KDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDL 67

Query: 107 VQVITPKGRASVPDSVKAELLQRIRSFLA 135
           V  ITPKGRA VPDSVK ELLQRIR+FLA
Sbjct: 68  VAEITPKGRALVPDSVKKELLQRIRTFLA 96

[Close]

BLAST of Lsi08G008610 vs. ExPASy Swiss-Prot
Match: Q9JIX0 (Transcription and mRNA export factor ENY2 OS=Mus musculus OX=10090 GN=Eny2 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 47  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDL 106
           K +  R+A+   LIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDL
Sbjct: 8   KDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDL 67

Query: 107 VQVITPKGRASVPDSVKAELLQRIRSFLA 135
           V  ITPKGRA VPDSVK ELLQRIR+FLA
Sbjct: 68  VAEITPKGRALVPDSVKKELLQRIRTFLA 96

[Close]

BLAST of Lsi08G008610 vs. ExPASy TrEMBL
Match: A0A6J1GGQ4 (Transcription and mRNA export factor ENY2 OS=Cucurbita moschata OX=3662 GN=LOC111454046 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIRSFLAST I
Sbjct: 91  PDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of Lsi08G008610 vs. ExPASy TrEMBL
Match: A0A1S3BDR5 (Transcription and mRNA export factor ENY2 OS=Cucumis melo OX=3656 GN=LOC103488502 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIRSFLAST I
Sbjct: 91  PDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of Lsi08G008610 vs. ExPASy TrEMBL
Match: A0A6J1KQ41 (Transcription and mRNA export factor ENY2 OS=Cucurbita maxima OX=3661 GN=LOC111496587 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.5e-34
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIR+FLAST I
Sbjct: 91  PDSVKAELLQRIRTFLASTAI 111

[Close]

BLAST of Lsi08G008610 vs. ExPASy TrEMBL
Match: A0A0A0KIM7 (Transcription and mRNA export factor ENY2 OS=Cucumis sativus OX=3659 GN=Csa_6G365120 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIRSFL ST I
Sbjct: 91  PDSVKAELLQRIRSFLGSTAI 111

[Close]

BLAST of Lsi08G008610 vs. ExPASy TrEMBL
Match: A0A6J1BSW0 (Transcription and mRNA export factor ENY2 OS=Momordica charantia OX=3673 GN=LOC111004543 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIRSFL ST I
Sbjct: 91  PDSVKAELLQRIRSFLGSTAI 111

[Close]

BLAST of Lsi08G008610 vs. NCBI nr
Match: XP_038884208.1 (transcription and mRNA export factor ENY2 [Benincasa hispida] >XP_038884209.1 transcription and mRNA export factor ENY2 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-34
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIRSFLAST I
Sbjct: 91  PDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of Lsi08G008610 vs. NCBI nr
Match: XP_008445505.1 (PREDICTED: transcription and mRNA export factor SUS1 isoform X2 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-34
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIRSFLAST I
Sbjct: 91  PDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of Lsi08G008610 vs. NCBI nr
Match: XP_022951096.1 (transcription and mRNA export factor SUS1 [Cucurbita moschata] >XP_022951097.1 transcription and mRNA export factor SUS1 [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-34
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIRSFLAST I
Sbjct: 91  PDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of Lsi08G008610 vs. NCBI nr
Match: KAG7020143.1 (Transcription and mRNA export factor SUS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-34
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 53  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 112

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIR+FLAST I
Sbjct: 113 PDSVKAELLQRIRTFLASTAI 133

[Close]

BLAST of Lsi08G008610 vs. NCBI nr
Match: XP_023002845.1 (transcription and mRNA export factor ENY2 [Cucurbita maxima] >XP_023002846.1 transcription and mRNA export factor ENY2 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-34
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
Sbjct: 31  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 90

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELLQRIR+FLAST I
Sbjct: 91  PDSVKAELLQRIRTFLASTAI 111

[Close]

BLAST of Lsi08G008610 vs. TAIR 10
Match: AT3G27100.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). )

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27
Identity = 55/81 (67.90%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           L+ESGEKE L EL+R+RL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGRASV
Sbjct: 35  LVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDELIRVITPKGRASV 94

Query: 118 PDSVKAELLQRIRSFLASTTI 139
           PDSVKAELL RI++F+ S  +
Sbjct: 95  PDSVKAELLNRIQNFIVSAAL 115

[Close]

BLAST of Lsi08G008610 vs. TAIR 10
Match: AT3G27100.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 8.7e-19
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 58  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV 117
           L+ESGEKE L EL+R+RL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGR  +
Sbjct: 35  LVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDELIRVITPKGRGKI 94

Query: 118 PDSVKAELLQRIRSFLASTTI 139
            +     +   + S L + T+
Sbjct: 95  YNEQSVSV--SVNSLLVTLTL 113

The following BLAST results are available for this feature:

BLAST of Lsi08G008610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ54	1.9e-26	67.90	Transcription and mRNA export factor ENY2 OS=Arabidopsis thaliana OX=3702 GN=ENY...	[more]
Q6DH42	2.7e-25	65.17	Transcription and mRNA export factor ENY2 OS=Danio rerio OX=7955 GN=eny2 PE=3 SV...	[more]
Q3ZBJ0	1.0e-24	65.17	Transcription and mRNA export factor ENY2 OS=Bos taurus OX=9913 GN=ENY2 PE=3 SV=...	[more]
Q9NPA8	1.0e-24	65.17	Transcription and mRNA export factor ENY2 OS=Homo sapiens OX=9606 GN=ENY2 PE=1 S...	[more]
Q9JIX0	1.0e-24	65.17	Transcription and mRNA export factor ENY2 OS=Mus musculus OX=10090 GN=Eny2 PE=1 ...	[more]

BLAST of Lsi08G008610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGQ4	1.1e-34	98.77	Transcription and mRNA export factor ENY2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A1S3BDR5	1.1e-34	98.77	Transcription and mRNA export factor ENY2 OS=Cucumis melo OX=3656 GN=LOC10348850...	[more]
A0A6J1KQ41	2.5e-34	97.53	Transcription and mRNA export factor ENY2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0KIM7	3.3e-34	97.53	Transcription and mRNA export factor ENY2 OS=Cucumis sativus OX=3659 GN=Csa_6G36...	[more]
A0A6J1BSW0	3.3e-34	97.53	Transcription and mRNA export factor ENY2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Lsi08G008610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884208.1	2.4e-34	98.77	transcription and mRNA export factor ENY2 [Benincasa hispida] >XP_038884209.1 tr...	[more]
XP_008445505.1	2.4e-34	98.77	PREDICTED: transcription and mRNA export factor SUS1 isoform X2 [Cucumis melo]	[more]
XP_022951096.1	2.4e-34	98.77	transcription and mRNA export factor SUS1 [Cucurbita moschata] >XP_022951097.1 t...	[more]
KAG7020143.1	5.3e-34	97.53	Transcription and mRNA export factor SUS1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023002845.1	5.3e-34	97.53	transcription and mRNA export factor ENY2 [Cucurbita maxima] >XP_023002846.1 tra...	[more]

BLAST of Lsi08G008610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27100.1	1.3e-27	67.90	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G27100.2	8.7e-19	51.85	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018783	Transcription factor, enhancer of yellow 2	PFAM	PF10163	EnY2	coord: 57..133 e-value: 2.1E-31 score: 108.1
IPR018783	Transcription factor, enhancer of yellow 2	PANTHER	PTHR12514	ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR	coord: 56..137
IPR018783	Transcription factor, enhancer of yellow 2	HAMAP	MF_03046	ENY2_Sus1	coord: 49..136 score: 20.54953
IPR038212	Transcription factor EnY2 superfamily	GENE3D	1.10.246.140		coord: 45..137 e-value: 6.2E-35 score: 121.4
None	No IPR available	PANTHER	PTHR12514:SF3	TRANSCRIPTION AND MRNA EXPORT FACTOR ENY2	coord: 56..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G008610.1	Lsi08G008610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0016578	histone deubiquitination
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0015031	protein transport
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0071819	DUBm complex
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0070390	transcription export complex 2
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003713	transcription coactivator activity