Lsi08G006740 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATGCTATAAAAGGTGGGTGGACGGGGCGTCCTCTTGCCCTAGCCAAGAACAATGAGCCTGAAGGGAGGAAGACAAGAATTCGGCGTTCAAAGGAGGAAAGGAAGGCAATGGTTGAAGTCTTCATAAAAAAGTAACCACGCAATGGTTTTAAATTCAATTCATATTTTCTATAGAATGCATGGATTGGTTAGATTGTTGAAATTATTAATTGTCTATGCATGATGACATTTGACCTGCAGCTATATTGAATTCCCAAGTGGATGATATCTTTCTCGAGAAAACCTTTTCCTGCTATATGATGTTCTCACTCCATGATTTATCTGGCTGTTCATGTTTAAACATGGATCATTGTTGTTTGGCACTAGTTCTTGGATTTGTTTACGCCGCTGTTTTCTTGTAAGCTTTTAGATAGCAAGCATCTAGAAACTGTTAGGTTGATAAATTCCCTTGCAGCTTAATAGTCATGGTTATTTTTATCCCAAAAACAGTCGTGGTTATTTCCCCTTAGTATGAAGTGGGATAAAAACATAATTCATAGATGTTAACAGGGGAATATTTATGGAAGTTTTAGCTCCCAGAGGAGGTAAGGGGAAAAAAGCTTCCTTCCTCAACATTTTGTTGATTGCACGTATATTGGATGAACATTTGTATTTTTGAACAAGAAAGAATGGATGAGCATTTTTTTGGGCCATATAAATAAACATAAAAGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTCAAGATAGAGCTATTGAAAATCAGATCCTTGCGAAACACTATTGTATATAAGCAAAATAATAATGATGGTAGTCTTATTTGAAGGAGTGTAACCTTCTAATGTTGAGAGTTCAAGGGAACTCAACTCAACTCTTGCCAAAATAATAATAATAATAATAATAATAATAAAAGAAAGAAAAATAAAAAGGAAATGGGTTATTCATCTTCTCCATTTATTTCATGAAAAATCTCTATAACCGAAGAAATCAGTAACCCGTGAAACCTTGCAATAAGTGACTTTGTCGACTGCTATCTACATACTAATAAAGATAAAATAAAGGGGTTAAAAGCCTTTCAGGATAACTGGTATCTAAAAGCATAATTTAATTAATAACATAGAATAGGATTGTAGCCTTTCTTCTCCCTTACATGACCAACCTTTTCCTAAAGGGCGAGATCTTTGAGGATGATTCTGGTATTCTGTGACTTATTGTTGGGTCTTTCGATTTCAGAATACACCAGCTCCTTTGATATGTTTTCTTCAAATCTCAGTATTGAAGCCTTTAAAAATGTTAGAGCTCTCTTGGGCAAGGTGAAAAGGCTCTAGTTCTTCTTATTGCTCCAGATCTGGTCTTCTTTGTTAAAAATGAGGTTGCATGATATTTAAATAGAAATAATAAAATTATTCAAGAGAGTTTAGACCTCTATGGTGGAACTTTGGAGAATCTGAAACTTCTCAAAAAATTTATCTGGACATGGAAATTCTCATTCCTTATTAACCTCTCGATTTAAATACTATGATATGAAAACAATTTACTGTTAGAAATCCTAAAATCAAAGAAATTACTAGACCACAAAAACTTATTTAACTGTTAATGACTAAATCTAGATATGGATGTAATTTATTTAATTATTAGAAGTATGAAATCGCATCATAACATCTTGCTTGCAGGTATCAGGAATCAAATAATGGGAGTTTCCCCTCGCTCAACCTTACTCACAAGGAAGTTGGTGGATCTTTCTATACGGTACGAGAGATTGTACGTGATATAATCCAAGAAAACAGAGTCCTTGGTCCGGGAAAGTTGTTATTAGAAGAGCACAGCACTGATCATTTACTTGAAGAGAATCCACTCCACTCAATTGCTATTGAACCTCAATCTCCTTTAACCGTATCGTCTAAGGAATTCTACTCTCCAGTTGACTACTACAACCAATATATAAATGAAGAATCAATCATTGTTTCAGATGAGCAATGCACTGCAACAAATATTCAGGGATCACAGAATGGGCCAATAATTAATGGCAGCCTGGTGGATGTAAGGGACAAGGATTCTGTTGAATTTATCAAGCCAGAGTTGCTAGTAAATGAACACAAGAAAGTAGAGGAAGTGATGAAAGAGGAATCAGGAATGCCAATTAATCATGTAAGTCCTTTGGCAACAGATGTTGTGGTAGAGACATTCCCATTGGATTCAGTTTCTTGGGGTGTTAATGGTTCAGATGTAAGATCTGAAATGTTGATTTCAACCAGTGCCTCAGAAAAGCAAGTTAGTCAAACCATTGAGTTAGAATCAGATGTTGGCTTGTTTAACATTAAAGCTTCTGGCTGTGTAGTTGAGAAAGCAGAGAAAAACTTTGCAGGTCCATTATCAGAAACAAAGTCTGACTTGGTGGAGGTAGCACAAATTGTTGAAACATCTAATGGATCTACTGTGAAAGAAGGTATCATATATGAAGTTGGGGGTCCTGAGTTGGAAGTTTGCAGTGATAATCCAATATCTGTGACCTTTGAACAAGGCCAGAAATCTAGTGAAATGAAGGTGCGTGTTCTACTTTTTTCTGGCTAAGCATTTAATGACTTTTTTTTTTTTTTTTTTTTCTTCTATCGTCTTTTAAATTTCTGGGGCATAGGTGTAACTTCTTAAAGTTGACTATTAGGTTATGACAAAATAGTGTGGGGCAATTACTTGAGTAGTTTCTGGGCCAGTTGAAACTTTAGATTGAAGAAAAAGAATAGAGAATTCCTTTTATCTAAAAACTTTATGAATGACATTTGGACGTTCATTTGCACGGTGGTCTTGTTTCCATGTTTCTGAAATACCTACTTTTTTATTTGAAAAATGCGAGAAACACCTACTTTTTTATTTGAAAAATGCACCTAGGACTGCATCCATCTTTTGGCAGCCCACCCAGCTGTCCAACCAAAGTTTGCCATGTGACAACTCTTCTCTCTTCGTTTTTTTTTTCTTTTTCATTTTGCTGTGTGATTAAGGTGGACTGCTAGAAGATGAGTGCAACTCAGTATGCATCCATGTATCATTATCGCTCATAAATAAATTGTCAAACAATATGTTCTCATCCAACCAGAGAAAACCTTGTCTTTCTTTTTTTTCTTTTGGCGGGGAGATGAGAAAGAAAAAGGAAACGAAGAAAATGATATGTTGGACTTTGGAGTTGTTTATTTTGAGGATTTGCCACTCTTTTTGTGTTTGTAACTCAACTTTTGAAAGCCTAATTTGCATTTGGACCAATATTGATGCTCTTTTACAGGCTCCAAATGCTTCTCCAAGTACTATTGAGAGTCTCAACAAGACATTCAGCAATGGCTTTGATCAGGCCTCAAAAATCAAAGAGGAGACAGAGATGGAAAATAAAGTAGATGCTGAACAAACTGGTGGCTCCCAGAAAGAAAGCATTCCAACTTTAAACAGAATTAATCTGTAAGAATATCCCCCCCCCCAAAATTAGTCAATCATTTTACATGCTTATTGGTGAGAAGGTACATCTGTTCGCTTATTGCGAATTGATTTTGAGATGAAATCTCATGATTATCTAATACTTATCAAACAGTTTAACCAACATATTCATCCTCCACCTTTTTTTTTTCTTTTTTTCCAGTGAATCATGGGAAGGGATGTCCAAAAACTCGTCAAAACCCGAAAACAACCTGCTTTTGGAAATCTTCAAGGCATTCATTGCTGCCTTCGTGAAGTTTTGGTCCGAGTAAGTAATATGATTGTCAAGTAGACGAATAGAGAGTAGTAGTTAAATTTTCTGCCACAGAACCTGTCTGTCTTTGTACCAAGTTGCAGTCGGTTACCCCGTTCAGTCCAGTCGGTCCCATCATCGATATTTATGAGGACAAAACTGGATTCTGAATGTGGGTTGGCATTTCTGTACTCTGCA ATGCATGCTATAAAAGGTGGGTGGACGGGGCGTCCTCTTGCCCTAGCCAAGAACAATGAGCCTGAAGGGAGGAAGACAAGAATTCGGCGTTCAAAGGAGGAAAGGAAGGCAATGGTTGAAGTCTTCATAAAAAAGTATCAGGAATCAAATAATGGGAGTTTCCCCTCGCTCAACCTTACTCACAAGGAAGTTGGTGGATCTTTCTATACGGTACGAGAGATTGTACGTGATATAATCCAAGAAAACAGAGTCCTTGGTCCGGGAAAGTTGTTATTAGAAGAGCACAGCACTGATCATTTACTTGAAGAGAATCCACTCCACTCAATTGCTATTGAACCTCAATCTCCTTTAACCGTATCGTCTAAGGAATTCTACTCTCCAGTTGACTACTACAACCAATATATAAATGAAGAATCAATCATTGTTTCAGATGAGCAATGCACTGCAACAAATATTCAGGGATCACAGAATGGGCCAATAATTAATGGCAGCCTGGTGGATGTAAGGGACAAGGATTCTGTTGAATTTATCAAGCCAGAGTTGCTAGTAAATGAACACAAGAAAGTAGAGGAAGTGATGAAAGAGGAATCAGGAATGCCAATTAATCATGTAAGTCCTTTGGCAACAGATGTTGTGGTAGAGACATTCCCATTGGATTCAGTTTCTTGGGGTGTTAATGGTTCAGATGTAAGATCTGAAATGTTGATTTCAACCAGTGCCTCAGAAAAGCAAGTTAGTCAAACCATTGAGTTAGAATCAGATGTTGGCTTGTTTAACATTAAAGCTTCTGGCTGTGTAGTTGAGAAAGCAGAGAAAAACTTTGCAGGTCCATTATCAGAAACAAAGTCTGACTTGGTGGAGGTAGCACAAATTGTTGAAACATCTAATGGATCTACTGTGAAAGAAGGTATCATATATGAAGTTGGGGGTCCTGAGTTGGAAGTTTGCAGTGATAATCCAATATCTGTGACCTTTGAACAAGGCCAGAAATCTAGTGAAATGAAGGCTCCAAATGCTTCTCCAAGTACTATTGAGAGTCTCAACAAGACATTCAGCAATGGCTTTGATCAGGCCTCAAAAATCAAAGAGGAGACAGAGATGGAAAATAAAGTAGATGCTGAACAAACTGGTGGCTCCCAGAAAGAAAGCATTCCAACTTTAAACAGAATTAATCTTGAATCATGGGAAGGGATGTCCAAAAACTCGTCAAAACCCGAAAACAACCTGCTTTTGGAAATCTTCAAGGCATTCATTGCTGCCTTCGTGAAGTTTTGGTCCGATCGGTTACCCCGTTCAGTCCAGTCGGTCCCATCATCGATATTTATGAGGACAAAACTGGATTCTGAATGTGGGTTGGCATTTCTGTACTCTGCA ATGCATGCTATAAAAGGTGGGTGGACGGGGCGTCCTCTTGCCCTAGCCAAGAACAATGAGCCTGAAGGGAGGAAGACAAGAATTCGGCGTTCAAAGGAGGAAAGGAAGGCAATGGTTGAAGTCTTCATAAAAAAGTATCAGGAATCAAATAATGGGAGTTTCCCCTCGCTCAACCTTACTCACAAGGAAGTTGGTGGATCTTTCTATACGGTACGAGAGATTGTACGTGATATAATCCAAGAAAACAGAGTCCTTGGTCCGGGAAAGTTGTTATTAGAAGAGCACAGCACTGATCATTTACTTGAAGAGAATCCACTCCACTCAATTGCTATTGAACCTCAATCTCCTTTAACCGTATCGTCTAAGGAATTCTACTCTCCAGTTGACTACTACAACCAATATATAAATGAAGAATCAATCATTGTTTCAGATGAGCAATGCACTGCAACAAATATTCAGGGATCACAGAATGGGCCAATAATTAATGGCAGCCTGGTGGATGTAAGGGACAAGGATTCTGTTGAATTTATCAAGCCAGAGTTGCTAGTAAATGAACACAAGAAAGTAGAGGAAGTGATGAAAGAGGAATCAGGAATGCCAATTAATCATGTAAGTCCTTTGGCAACAGATGTTGTGGTAGAGACATTCCCATTGGATTCAGTTTCTTGGGGTGTTAATGGTTCAGATGTAAGATCTGAAATGTTGATTTCAACCAGTGCCTCAGAAAAGCAAGTTAGTCAAACCATTGAGTTAGAATCAGATGTTGGCTTGTTTAACATTAAAGCTTCTGGCTGTGTAGTTGAGAAAGCAGAGAAAAACTTTGCAGGTCCATTATCAGAAACAAAGTCTGACTTGGTGGAGGTAGCACAAATTGTTGAAACATCTAATGGATCTACTGTGAAAGAAGGTATCATATATGAAGTTGGGGGTCCTGAGTTGGAAGTTTGCAGTGATAATCCAATATCTGTGACCTTTGAACAAGGCCAGAAATCTAGTGAAATGAAGGCTCCAAATGCTTCTCCAAGTACTATTGAGAGTCTCAACAAGACATTCAGCAATGGCTTTGATCAGGCCTCAAAAATCAAAGAGGAGACAGAGATGGAAAATAAAGTAGATGCTGAACAAACTGGTGGCTCCCAGAAAGAAAGCATTCCAACTTTAAACAGAATTAATCTTGAATCATGGGAAGGGATGTCCAAAAACTCGTCAAAACCCGAAAACAACCTGCTTTTGGAAATCTTCAAGGCATTCATTGCTGCCTTCGTGAAGTTTTGGTCCGATCGGTTACCCCGTTCAGTCCAGTCGGTCCCATCATCGATATTTATGAGGACAAAACTGGATTCTGAATGTGGGTTGGCATTTCTGTACTCTGCA MHAIKGGWTGRPLALAKNNEPEGRKTRIRRSKEERKAMVEVFIKKYQESNNGSFPSLNLTHKEVGGSFYTVREIVRDIIQENRVLGPGKLLLEEHSTDHLLEENPLHSIAIEPQSPLTVSSKEFYSPVDYYNQYINEESIIVSDEQCTATNIQGSQNGPIINGSLVDVRDKDSVEFIKPELLVNEHKKVEEVMKEESGMPINHVSPLATDVVVETFPLDSVSWGVNGSDVRSEMLISTSASEKQVSQTIELESDVGLFNIKASGCVVEKAEKNFAGPLSETKSDLVEVAQIVETSNGSTVKEGIIYEVGGPELEVCSDNPISVTFEQGQKSSEMKAPNASPSTIESLNKTFSNGFDQASKIKEETEMENKVDAEQTGGSQKESIPTLNRINLESWEGMSKNSSKPENNLLLEIFKAFIAAFVKFWSDRLPRSVQSVPSSIFMRTKLDSECGLAFLYSA Homology
BLAST of Lsi08G006740 vs. ExPASy TrEMBL
Match: A0A5A7UUF2 (Plastid envelope DNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00240 PE=4 SV=1) HSP 1 Score: 714.9 bits (1844), Expect = 2.1e-202 Identity = 388/489 (79.35%), Postives = 418/489 (85.48%), Query Frame = 0
BLAST of Lsi08G006740 vs. ExPASy TrEMBL
Match: A0A5D3BB97 (Plastid envelope DNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00180 PE=4 SV=1) HSP 1 Score: 682.2 bits (1759), Expect = 1.5e-192 Identity = 374/489 (76.48%), Postives = 402/489 (82.21%), Query Frame = 0
BLAST of Lsi08G006740 vs. ExPASy TrEMBL
Match: A0A1S3C473 (uncharacterized protein LOC103496473 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496473 PE=4 SV=1) HSP 1 Score: 662.9 bits (1709), Expect = 9.6e-187 Identity = 362/458 (79.04%), Postives = 389/458 (84.93%), Query Frame = 0
BLAST of Lsi08G006740 vs. ExPASy TrEMBL
Match: A0A0A0LML9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G384970 PE=4 SV=1) HSP 1 Score: 644.0 bits (1660), Expect = 4.6e-181 Identity = 348/458 (75.98%), Postives = 381/458 (83.19%), Query Frame = 0
BLAST of Lsi08G006740 vs. ExPASy TrEMBL
Match: A0A1S3C344 (uncharacterized protein LOC103496473 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496473 PE=4 SV=1) HSP 1 Score: 630.6 bits (1625), Expect = 5.3e-177 Identity = 348/458 (75.98%), Postives = 373/458 (81.44%), Query Frame = 0
BLAST of Lsi08G006740 vs. NCBI nr
Match: XP_038886590.1 (uncharacterized protein LOC120076760 [Benincasa hispida]) HSP 1 Score: 729.9 bits (1883), Expect = 1.3e-206 Identity = 384/428 (89.72%), Postives = 402/428 (93.93%), Query Frame = 0
BLAST of Lsi08G006740 vs. NCBI nr
Match: KAA0057131.1 (plastid envelope DNA binding protein [Cucumis melo var. makuwa]) HSP 1 Score: 714.9 bits (1844), Expect = 4.4e-202 Identity = 388/489 (79.35%), Postives = 418/489 (85.48%), Query Frame = 0
BLAST of Lsi08G006740 vs. NCBI nr
Match: TYJ97112.1 (plastid envelope DNA binding protein [Cucumis melo var. makuwa]) HSP 1 Score: 682.2 bits (1759), Expect = 3.1e-192 Identity = 374/489 (76.48%), Postives = 402/489 (82.21%), Query Frame = 0
BLAST of Lsi08G006740 vs. NCBI nr
Match: XP_008456554.1 (PREDICTED: uncharacterized protein LOC103496473 isoform X1 [Cucumis melo] >XP_008456555.1 PREDICTED: uncharacterized protein LOC103496473 isoform X1 [Cucumis melo] >XP_008456556.1 PREDICTED: uncharacterized protein LOC103496473 isoform X1 [Cucumis melo]) HSP 1 Score: 662.9 bits (1709), Expect = 2.0e-186 Identity = 362/458 (79.04%), Postives = 389/458 (84.93%), Query Frame = 0
BLAST of Lsi08G006740 vs. NCBI nr
Match: XP_004138835.1 (uncharacterized protein LOC101202832 [Cucumis sativus] >KGN63028.1 hypothetical protein Csa_022329 [Cucumis sativus]) HSP 1 Score: 644.0 bits (1660), Expect = 9.5e-181 Identity = 348/458 (75.98%), Postives = 381/458 (83.19%), Query Frame = 0
BLAST of Lsi08G006740 vs. TAIR 10
Match: AT3G52170.1 (DNA binding ) HSP 1 Score: 176.4 bits (446), Expect = 5.2e-44 Identity = 167/518 (32.24%), Postives = 246/518 (47.49%), Query Frame = 0
BLAST of Lsi08G006740 vs. TAIR 10
Match: AT3G52170.2 (DNA binding ) HSP 1 Score: 176.4 bits (446), Expect = 5.2e-44 Identity = 167/518 (32.24%), Postives = 246/518 (47.49%), Query Frame = 0
BLAST of Lsi08G006740 vs. TAIR 10
Match: AT5G58210.3 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.9e-09 Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0
BLAST of Lsi08G006740 vs. TAIR 10
Match: AT5G58210.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.9e-09 Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0
BLAST of Lsi08G006740 vs. TAIR 10
Match: AT5G58210.2 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.9e-09 Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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