Lsi08G006020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G006020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cleavage stimulating factor 64
Location	chr08: 14296859 .. 14306290 (+)
RNA-Seq Expression	Lsi08G006020
Synteny	Lsi08G006020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACCTTCGCTCAGTTACGAACTCCATTGATCCGCGTTCCTATTGCGGAACTTCTGTGCAGTTTTCAGCTGCAGTGCATCAGTGGGAGGCGGATTAGTTTAAAAACTATGCTGAGGAGGAAGAAGATGAAGCAGTGCTTCAGCTTCTTCTTCTTCTTCTGTTGATTCATGGCCTCCTCTCAGCATCGTTGTGTTTTTGGTGTGTTCTGTATTCTTTTTTCGTTGTTAATTTTGATTCTCTGTTTTTGCGTTTTGATTTGGTGGGGGAACTGTTCGTCTATGTTGGAGAATGACGGATTTGAGTTGTATATCTTGCCGATTCTTTAGTGTTGCTTCTTATTTCCTTTTGTTTTGCTTTCAATTGTTCTTGGCTTTTATCAATCTGGGCCACGATTGAATTTTTTTTTTTTTGGTGATTTGGTTTCTGGTGGCCTTTTTTATTTTTTATTTTTTGTGTCTTATTGTGTTGAATTTTGATTTCAGTTGGGAATATACCTTATGATGCTACTGAAGAGCAGCTTATAGAAATCTGCCAAGAAGTTGGACCCGTAGTGTCGTTCAGGTCTGTGTTCTCTGCTCTTTTTATCTGGGAAATGATCCCTAAAATTGATATTGGATTGACATTTAGGATCTAGAATGAGATTGAGAGCTTTGAAGCCGTAAAGTTGGATTTTTTCCCTTAATTATTATTTTTGAAAACCTCCTCGAACTTTCTGTAGTTTCCTTACCTTTTACTCTCTAGCCTTCATTGTTTTCACCTCTGCGCGTGGATTTTGTTATTCTGTTTCTCTTATTCCTCTTCTATGTTTTGTTTCGGGGGTTTACTTCTGTCATTCTCTATCTGGGACAGATTAAGTGGCTATGCCATGCTAGAGTAGAATCCTTTGTTTTTGCTAGGTTTTGTCTACTGTCAGCCCACTGCCAAGGTAGCCAAGGGCTGGGCATTCGGTTCTTAATTGTTTTCTTTAGGTCAGTTGCCAAAGATGATTGGTTTTTATTGACTGTGATATACATATAGTGTAGTTAAGTCTATGGCATGACTGATAATTTGCCCATGTCTGGTCTGATTGATTGAGGGGGTGTAGTGGAATGCCAGTGTATACTTTGAAAAAATTATCGTGTACTGTTATATCTCATAACAGATAGACAGCCTTTTCTTTAATAAATGTAACACGCTTTTTGGTTCTGTCATGGTATAGTGTGCATGATAAGAGGTCTCTAATCTGTAAAAAGGGAACTACAACTAATATACCACATTTGGAATTTGAGCACATTATTGGAAGCTGTAACTTTTAATTAACTGCAGTATGCCATTCTTGAAAATTATTATCTTCTAAGTTCCCCATCCAAAAAAATGAAGGAAAAAGAAAATAAACTAAGTGCAGGACATCCAGTGTTTTTAAATGCCCAAGGCGCAACGGTCCTCTGGAGCCTAGGTGCAAGGTGCACAAAAAGGCGCGGACTTTTTTTTTGTGAGGCGCACTATATATAAAAATATTACATTAGAAATAGAAAGCATAGTTGGAGTGGAAATATGGAAAAAAAAAAATCCCAAATACAAGAAATTTTGCATTTAGGCTTAGTAAACATGATTCTTTTAGTTAATAAAGAAGGAAAATCCTAAATTATTACTAGTTTTTTAAAAATAATGGAAAAGCCCCAAGGCCCAAGGCTTTGAGCCTCGGGGCTTCACAAAAGGTGCACGCCTGAGGTGTGCCTTATTTTGTGAAAGGCGAGACGTCAAACCTGCGCCTTGAGCCTAGGCCGCGCCTGAGAGGGCTTTTTAAAACACTGAGGACATCGTTATTGAGAGCCATTATTTTCTAACGTCTGAGTCTCTTGTCCAAAAGGAATTTGAATATCATATTAATTGTCATTTCAGCTATTGTTTTTCAATACATTTTAAAGTTAAAATTAATGGTTCCTTCCTTCTTTAGATTAGTTATTGACAGGGAAACTGGAAAACCAAAAGGCTACGGGTTTTGTGAGTACAAGGATGAAGAAACAGCTTTGAGTGCTCGTCGTAATCTTCAAGGTTATGAGATTAATGGCCGGCAGTTACGAGTTGATTTTGCTGAAAATGACAAGGGGGCAGACAGAAATAGAGAACAGGTGAAATATTTAACCTTTTGCAAAATGACTCATTGACTATTCTCGTCCATAGCTAGTTACATTGGGGTTTTTGGATTATAATGCTGCCAATATTTTCAAGGAGTGTGCTGTAAATATTAAATTGATTTAGTTTTTAAAACCTTGGAGGCTGTTTTCATTTCTCTGCTTAGAGTAATCTTCAACCAGTAGTTGAAGAAACAGGTTCGAAGGAGGCTTTTTTGTAGTCTTTACTTTGAAATTTTTGTTTTCCATGTTTAAAAGGGATTCAAATATATGTTCAATAGCTTCAGTAACCTTCTTAGATGCCTGGAATAGATTTCTAAATTGGATTGTATATATATATAAAATATTGTGATATTTTCCTGACTCCTGACATATGTATTTATAAGAACAAATTTTTTTGGGAGGATTAATAGGTTTTCTAGGGAGGTGGAGAGATCTAGTGAGGATGTTTTTTTTTAAACAAGAAACAAATCTTTTCATTGATAAAATAATCGAGTGAGCATGTTTGGGAGGGGGCTAGGTTTAACGCCTTGTTACTAGCTTCGGTTAATATACTCTTCTGTAATTATGATCTTGCCATCTTAGTTTGATTTTGCCAGATTGGAGCCCCTTTCTGTAGTTACTGTTGGGCTCCCTCTTGACTCTTTCTTAATGAAAGTTTGGCTTCTTACAATATATATTTATATATATATGTATTTATTTATTTATTGGTACTTGGGAATTTGTCGATGATAGGATTTTTTTCAAAATGTTGGCAACTAGACGAAAAGGACATTATCTTTTCTTCGAAACTGAAAGTTCTACGTAGAACTTCAATCCTTTTTAATTTGAAAAGGCAGAAAAGAAAATTTCGTAAGTAAATATTTTTTTATTGGAAAAGTTCTTTTGATAAGTATACCTCCGAGTTAAAAACTGAAATTACAAAAGCCATCTAGAATTCATAAATCCAAAGGAAATATTCCAAAGATCAAATACTCAACTCAGTCTTCAGCTGCATTTACTTTTTCTTCAATTATCATTATGCTTCTTTCCAATCAAATGATTTGCCAAATTGCTGAAACTGTGCATTTGACATTCGAATATTTAGAAAAATAAAAAATTTCCTTTTATGTGTCTACATATTGCATGTTAGTTATGATTTGATTTGAGCAACTTTCCTTCCCTCTTTTCAGGGTCGTGGTGGACCTGGATTGGTTGCAAATGCTGGTTAGTTTTCTCTATCTTAAATGTTTTCTGCCTTATGGATTGTGCAATAATATCGACTGTTTTCTTTAAGTTTTGTGTTAACATCAAAGATGCTAAAAAACAATTAGGTGGCCCAACACCCCATGGGGAATCCAGTCAATATCAATCAATTGGTCTACATATAGCTATAACTGCTGCAGCCGTCATGGCGGGAGCCCTTGGTGGTGCACAAGCGGCTTCTAATCAGAATACTTCGCAGAGTGCAGCAATGCCCAACGATCCTTTAACTTTACATCTGGCTAAGCTTTCTAGGAGTCAGCTTACTGAAATTATGTCAGGGCTAAAGGTAACTTTTTGAGTATGTTCCCTCCTCTCTCCTTATTTTCCTGAATAGCTCCTGTTGATTGGTACATTGTTTGGACTTAGGCAATGGCTACGGAAAACAAAGATCTGGCTCGTCAGCTATTGCTGGCAAGACCACAATTATCAAAAGCTCTTTTCCAGGTACTTATTTACCTTTCCTCCTTCATAGTTTCTTCAAGCGTGGAGATCCTCCATAATATCTTGTGTTTTTTTACTTTCTTTCCCTTTTCTTTTCTGTAGAATATTATTTTCCTAATTACTACTAGTTATTTTCTCAGTTCAGTGTTCAATTCCAATATCTCTGCGTGGAAGAGATGTTGATGAATTTCTGCCTTCTTTTACTCTTATGATCTTATTGTCTATGTGTATCAATTTTGTAAACATGTTTATGCAATCCATTTCTTCCTAGTTCCTACTCTAGTAGTTATTTGGGTTAACACAATAAGCTGGAGAAAAGGAAAAAAAAATCTATTTGGACCTCTTCATGACGTGAATAAAATATGAGATTGAAGGTAGCTGTTTGAACCCAATTGGTTCTGTAGATGTCAAGGGAACCAACGTAGATCACAACTATACATGTTAATTATTGTTTCATTTAGCTCGTCATTCATCCTCATATATGATGTTGAGAATATGTATGCACATATTTAAAGCACTCACTCTTATTTTTTTGCTCGCATTTAAGTTCCATAGGTTTATTGAACATCAGTGTGAATTACATTTTTTTAGAAACTGAGCTTTCATTGAGAAAAATTAAAACAACTGGGGTCGCCCAGTTCGGAAATTATATCGTTGAGAAGAAACATTGTTTTATTTTTGGCATTTTTGATGAGTGAAGATGTCCAGAAGTGTCAGCTCTTAATCCTTTGATAGAGACAGACTAATCAAAGCACTTGTTAAGTTTGGATGAAAATAAGTCTTTGAGAAGAATTGAAAATGTTCTTGCCTCTATGATTAGCTCGGGTGATTGCCATTTTGGTGTTGTAGTCACCTTTCAATGGCTCCTTTAATTATGTGCGAGGAATTTCCCTCGTCGCTAGTGTGCGTCATATGTTAAAAGAATAAAGAATCTAATTGCATAGGAAACACACCTTCATAGAACATTCCAGCCACACACTCTTCTTTTAGCAGATGCGCATAACTAGAGGACCCTCTCTTTCCGCTTAAATTAAGAAAGTTTTGGAAGGACATAATTGGATGAACTTGTCTTATGTGAAGCTTCTAGAACACTGATATGTGAAGTGTCCACCTGGAACCTTCTCATCAGATTTAAGTTAAGCTACTCTTTGACGTAGTTTTTTAACTTGTATTGCCTCAAAGCTTCTTTAGGTCCTAATCTCAGAACCAATTTTTGTGTTAAATTTTGATTGAAAACCAATGTTGTAAGAATCAAAATAGTTCTTTGTTGGAGACAGAAGACTTTAAATAAATCTTTGGGAAATAAGAGTCCTGCAATACGTTCATCCTTTTAGTTTTACCTTATTAGTTATTTCTTCGACAACTTTCTTGTTCCTCCCAATTTTATGAACTATATCTCTTCTTGTATGCAACACCAGCTAAACATCCTCTCTTTTCTGTAATTTTGTTTGCAGTCACAGATAATGCTTGGAATGGTCACTCCACAAGTGGTATTTTTCTTCACTGCCTATGTTGTTATTATTATTACTACTTCTACTACTACTATTATTATTTGGGCGTGTCTGTTATATAGCTGTTAAGATTTTCTCACACACAATGCCCCTTCTTTGATTGTTGCAGTTGCAGAAGCCTAATTTACGGCAACCTTCTACTCATCCTCAGCTTCCTTTGCATGAAATTCAGCAGGGTCAGTCATCATCTCTTCAAATTCAACCAGGGCTTCCCCCTCTTGCACCTAACAGGATGCAAACTGGTTTTGTACCTAAAAAAGAAACTCAATTGTCTCTCACGCCTCAAAATCCTTTGGCTCCCCATCAGTTTTCTGCATCCCAACGGCCTCCACTTCAATCTCAAATTCAGCCATCACACGCTTTACAAGGCGCTTTGACCGGAATGCCTGGAGGCTCATCGCTTCCTTCCATAAGTTTGCAGGGAAATATATCTGTTAGGCAACAGGTTCAGGTGCCTACCTCCTCTTCCTTAAAGCAGCACATGCGTCCTCCTCCTCAACAATATTCGGGGCATGGTGGAGCTTTAATTCCTGGGCATAACGCTCATATTGCTAATCCAGAAGCTAAACCTTCCCTTTTGCCTCACCCTTCCTTATCAGATGCAGACTTTCAGGTTCTACTTTATGCATTTTTTCTCTTTCATTTTATAGTTTAATATATAAATGTCAATGCTATTTTCTTTTTCATTGTTTATAGGATTTTTGTTTTCTTTTTCATTTTAAAGTTTACTTGGAGAGCAGGTAAGGCCAGTATAGCAAAAGTTGCTTCCCAACCTTGTAGTTTACCTTTGATAGAATGACAAGTTAATTTTAAGCTTTAACTCAATGCAAATCTGGAGGGGAAATAATAATGCAACTAACTTTTATGTTGATGTTTTGGTGATTGTTATAGGTGGAAATATAAGTGTTCTTAATTTATTTCTCTCATGTGTATGTGTCCACTTAATGAGAAACTCTTTATGATCAATAAATGAGGCTTTGCTTAACAATGTTTGTAGTCCTCTATTATCTGGTTATGCGTATTTATCATTTCTTCTTTTTTTGTTTTTGAGAATAAACAAAATTTCATTCATATATGAAAAAAATGAAGAACAAACGTAAAAGAACCAAACCACCAAACCGTTAAAGTAAAAATCCCAAAAGTTACAAAAGTCAAAGCACAAATTTTAAGACCAAAGTACCCGAGGGAGAATTAGCTAATATCTCAGAAGAAAAACTGCACGGCCAAATAACCACTAAAGATAAAAATCTGACCATCAGAAGGCATGCCCAGCACAGCTGCCCAGATGACAGAACTCTGGAAAAGAGATCCAAAACTCCAGCTAGAGAACAAAAAAGTTTCTCTAACTCCTTCAAAGCTACTGACCACCATCAAACCGCCACCAAGAGTTCTATTTTCATTTTCATTTTCTATTTTTCTTTTTAATAACAAGAAACGTAACTTATCAAAAGAGTCAAAAGAGTAGGGCAGAGTAATTGAAATCAAAACCGACATACTCTTTCTTTTGGACTTTGTGGGGCGATGGAAATGGGCACCTTTTCCGAGACTCTTTTTCCACTTTTGGCTGTTTTATGGATTTAGTTTTTTCTACTGTTTTGGTGCAGAACTAAATACCCTTTTAAACACTATAGCTTATCATTTTTAGTTACCATTTGACATCTTTATAGTCTTTTGTAATCACCTTTAGGTGTTTGTGGTTTTATTTCATTTATCAATGAAATGTTTCTCTTTCAAAAAAAGAAGAAATCAAAACCGTACTCAAACAAGGAACCTGCTCTAGCCTGAAAATTTTAATAAGATCCTCTGTAATATCTAAAAAAGTCTTTGGAGTTTGCTCCCCTTGGTTATGTTATTGTCTTCTTGTTTCTGACTTGCTCTTCTTAACAGCCTGGCCCCTCCACAGCGTATAGTGCATCTCAGATAGTGGGCAGTGATGTTGATAAGTCTTCTCAAGTTCCTCTTGGTGTAGATGGTAAAAGAAATATACTTCATGGCTTTTCAGGAACAACTAATCGCCCTGTAAAGCAAATAAAATTAGAGGATGGAAAAGGCAGCCCTTTCTCAGCCGGAGGTCTAAGTGCATCAATAGGTACCAATGGATCTGGACAACTTGGAATTGTCTCAGATCCCAATCTGACGGGAAAGCAACTCTCTGAGAAACCAACTTCATTGGTACGTGATTTATTACTTGAAAATATTTACTCTCTTTCTTGTTCATGATAATTTGGTTGCATTGACAGCATTTACTGCAATTTCCATATTTCTATCTGATTTTGTTCTTTATAGTTTTCTGTCTGATTCTGAATTGATTTTTTCTAGTTCAGTGCTCATGTCATGTAGAAGAGTTGTGCATACTTATCTTTTGAGAAATTAGACTCTCACTAAGAAGTATAAAAGATTAGAGTGGTATTTGCAAGTGTCTTTTGACATTTTAAGAGTGAGCTTTAGCTTGAGATGCCTTTTGAGGGTAGTGCTTTTAAATGGCATACTTCTTATTTAAACGAGTTTAGAATTTTCAAAATCACTTTCTAACAAAATACATTGGAAGTAATTTTAATAAGCTAAAGGTCACATTGAACTTGATCGATCCAAGGTTTATATACATATATATATATACACATATATTTCCAATATGATATTTATCCTATCTTTTACCTTTAAGTTCAGTGATTTGAACCTCAACTACGTTCATTCACAAGAGCAACAATACAGCCTAAAATTGGGTCCGGTTTGGTAACTATTTGGTTTTTTATTTTTTTGAAAATTAAACCTATTTTCTCTCAGTTTCTTACAAACTTTTACATATTTCTTAAGTAAAAGAATTGAATTCTTAGTCAAATTACTAAAACAAAAACAAGTTTTTTAAAACTACTTTTTTAGTTTTCAAAACTTGGCTCGATTCTTTTGAAAACATTGGTAAAATGTAGATAACAAACCAAGATATTTAGAAGTAAAAGGGTGTTTATAAGCTTAATTTTCGAAAACCAAAAACTAAAAAACCAAATAGTTACCAAATGAGGCCTTAATTGTTCAAATCAAGAAAAGTGTAATAAAATGATTGAAAAGCGAATATGAAAGATCTGGTTCATATTACTGTAGGTGAGTTCTCTCACTGGAGTATCTTGTTTTAGTTCATAGTCTGTGCCCCAAAATGCTCATGGCATAATAGCATCGAGGATGTGGGTTGAGAATTTTGTCTGGCCATCAGTTTTAGTTCAATAACATGAACATTTTCTCTGTAATTGCATTCATAGCCAAATCATCATGCTTCAAATTCTTGTTCCTATAGATTTATGAATTTTCTACTTAGATATGTTAATGTCTTAGAGTAAGTTCCATCGATCATTATGACAAGATCTCTGCATGCTGGTGAAGTTGATTGATATCTTCTGAATCATAACCTGAAATAAACTAGCACTTCTGTTTCTTGTTCCTCCACCAGCTTCCCCACAGTGTCGAGTCTGTACTACTGCAACAAGTTTTGAATCTAACTCCCGAACAGCTTAACTCGTTGCCACTCGAACAGAGGCTGCAAGTTATTGAGCTCCAGCACGCACTTCGCAGAGATCAAATGCGGCCATCCTAGCAAGAAAATTACTGCTGATCAACCCGACACTCTCGGAAGCTCTGCTCCGAGCAACTAATGCTGGCAGGTAGCAGACAGATTCAGCATAGTAGATTGTAAAATATTTGGCTCCAGAAAGATTCAGCAAGTGACAGTCAAAAATACCTGTAAAATTATTGCTTGTCGAAGGGGTCCAAAGCGACGGGTCCTGCCACAAGGTATGAGTTTTTCATAAACAACATTCATGTAAGGCTTACAAGTTTGTGATTATAGTGATTCCTTAATAATAACAAATCAAGATAGGGGAAAAGATCCAACGGTGGAGGAATTTTGATATATTTTTAGGGTCTCTTTTTTTGGCCGTTAGATTTGCAATTATATTTTTGCCAGTTTTGGACCTCTTTCCTTTGCTTCTACTGTTCGTTCTTTTTATGTAATTTCTCATTTTGGCTTTTGGTTTTGTTTGTAAAAGAAAAATTGCTAATTTGGTTTCCTAACTGTTAAGAGACGTTTTTAATATCCAGTCTCTTTTGAATCAATTTAGATCATACTTAG

mRNA sequence

CGAACCTTCGCTCAGTTACGAACTCCATTGATCCGCGTTCCTATTGCGGAACTTCTGTGCAGTTTTCAGCTGCAGTGCATCAGTGGGAGGCGGATTATTGGGAATATACCTTATGATGCTACTGAAGAGCAGCTTATAGAAATCTGCCAAGAAGTTGGACCCGTAGTGTCGTTCAGATTAGTTATTGACAGGGAAACTGGAAAACCAAAAGGCTACGGGTTTTGTGAGTACAAGGATGAAGAAACAGCTTTGAGTGCTCGTCGTAATCTTCAAGGTTATGAGATTAATGGCCGGCAGTTACGAGTTGATTTTGCTGAAAATGACAAGGGGGCAGACAGAAATAGAGAACAGGGTCGTGGTGGACCTGGATTGGTTGCAAATGCTGATGCTAAAAAACAATTAGGTGGCCCAACACCCCATGGGGAATCCAGTCAATATCAATCAATTGGTCTACATATAGCTATAACTGCTGCAGCCGTCATGGCGGGAGCCCTTGGTGGTGCACAAGCGGCTTCTAATCAGAATACTTCGCAGAGTGCAGCAATGCCCAACGATCCTTTAACTTTACATCTGGCTAAGCTTTCTAGGAGTCAGCTTACTGAAATTATGTCAGGGCTAAAGGCAATGGCTACGGAAAACAAAGATCTGGCTCGTCAGCTATTGCTGGCAAGACCACAATTATCAAAAGCTCTTTTCCAGTCACAGATAATGCTTGGAATGGTCACTCCACAAGTGTTGCAGAAGCCTAATTTACGGCAACCTTCTACTCATCCTCAGCTTCCTTTGCATGAAATTCAGCAGGGTCAGTCATCATCTCTTCAAATTCAACCAGGGCTTCCCCCTCTTGCACCTAACAGGATGCAAACTGGTTTTGTACCTAAAAAAGAAACTCAATTGTCTCTCACGCCTCAAAATCCTTTGGCTCCCCATCAGTTTTCTGCATCCCAACGGCCTCCACTTCAATCTCAAATTCAGCCATCACACGCTTTACAAGGCGCTTTGACCGGAATGCCTGGAGGCTCATCGCTTCCTTCCATAAGTTTGCAGGGAAATATATCTGTTAGGCAACAGGTTCAGGTGCCTACCTCCTCTTCCTTAAAGCAGCACATGCGTCCTCCTCCTCAACAATATTCGGGGCATGGTGGAGCTTTAATTCCTGGGCATAACGCTCATATTGCTAATCCAGAAGCTAAACCTTCCCTTTTGCCTCACCCTTCCTTATCAGATGCAGACTTTCAGTTTACTTGGAGAGCAGGTAAGGCCAGTATAGCAAAACCTGGCCCCTCCACAGCGTATAGTGCATCTCAGATAGTGGGCAGTGATGTTGATAAGTCTTCTCAAGTTCCTCTTGGTGTAGATGGAACAACTAATCGCCCTGTAAAGCAAATAAAATTAGAGGATGGAAAAGGCAGCCCTTTCTCAGCCGGAGGTCTAAGTGCATCAATAGGTACCAATGGATCTGGACAACTTGGAATTGTCTCAGATCCCAATCTGACGGGAAAGCAACTCTCTGAGAAACCAACTTCATTGCTTCCCCACAGTGTCGAGTCTGTACTACTGCAACAAGTTTTGAATCTAACTCCCGAACAGCTTAACTCGTTGCCACTCGAACAGAGGCTGCAAGTTATTGAGCTCCAGCACGCACTTCGCAGAGATCAAATGCGGCCATCCTAGCAAGAAAATTACTGCTGATCAACCCGACACTCTCGGAAGCTCTGCTCCGAGCAACTAATGCTGGCAGGTAGCAGACAGATTCAGCATAGTAGATTGTAAAATATTTGGCTCCAGAAAGATTCAGCAAGTGACAGTCAAAAATACCTGTAAAATTATTGCTTGTCGAAGGGGTCCAAAGCGACGGGTCCTGCCACAAGGTATGAGTTTTTCATAAACAACATTCATGTAAGGCTTACAAGTTTGTGATTATAGTGATTCCTTAATAATAACAAATCAAGATAGGGGAAAAGATCCAACGGTGGAGGAATTTTGATATATTTTTAGGGTCTCTTTTTTTGGCCGTTAGATTTGCAATTATATTTTTGCCAGTTTTGGACCTCTTTCCTTTGCTTCTACTGTTCGTTCTTTTTATGTAATTTCTCATTTTGGCTTTTGGTTTTGTTTGTAAAAGAAAAATTGCTAATTTGGTTTCCTAACTGTTAAGAGACGTTTTTAATATCCAGTCTCTTTTGAATCAATTTAGATCATACTTAG

Coding sequence (CDS)

CGAACCTTCGCTCAGTTACGAACTCCATTGATCCGCGTTCCTATTGCGGAACTTCTGTGCAGTTTTCAGCTGCAGTGCATCAGTGGGAGGCGGATTATTGGGAATATACCTTATGATGCTACTGAAGAGCAGCTTATAGAAATCTGCCAAGAAGTTGGACCCGTAGTGTCGTTCAGATTAGTTATTGACAGGGAAACTGGAAAACCAAAAGGCTACGGGTTTTGTGAGTACAAGGATGAAGAAACAGCTTTGAGTGCTCGTCGTAATCTTCAAGGTTATGAGATTAATGGCCGGCAGTTACGAGTTGATTTTGCTGAAAATGACAAGGGGGCAGACAGAAATAGAGAACAGGGTCGTGGTGGACCTGGATTGGTTGCAAATGCTGATGCTAAAAAACAATTAGGTGGCCCAACACCCCATGGGGAATCCAGTCAATATCAATCAATTGGTCTACATATAGCTATAACTGCTGCAGCCGTCATGGCGGGAGCCCTTGGTGGTGCACAAGCGGCTTCTAATCAGAATACTTCGCAGAGTGCAGCAATGCCCAACGATCCTTTAACTTTACATCTGGCTAAGCTTTCTAGGAGTCAGCTTACTGAAATTATGTCAGGGCTAAAGGCAATGGCTACGGAAAACAAAGATCTGGCTCGTCAGCTATTGCTGGCAAGACCACAATTATCAAAAGCTCTTTTCCAGTCACAGATAATGCTTGGAATGGTCACTCCACAAGTGTTGCAGAAGCCTAATTTACGGCAACCTTCTACTCATCCTCAGCTTCCTTTGCATGAAATTCAGCAGGGTCAGTCATCATCTCTTCAAATTCAACCAGGGCTTCCCCCTCTTGCACCTAACAGGATGCAAACTGGTTTTGTACCTAAAAAAGAAACTCAATTGTCTCTCACGCCTCAAAATCCTTTGGCTCCCCATCAGTTTTCTGCATCCCAACGGCCTCCACTTCAATCTCAAATTCAGCCATCACACGCTTTACAAGGCGCTTTGACCGGAATGCCTGGAGGCTCATCGCTTCCTTCCATAAGTTTGCAGGGAAATATATCTGTTAGGCAACAGGTTCAGGTGCCTACCTCCTCTTCCTTAAAGCAGCACATGCGTCCTCCTCCTCAACAATATTCGGGGCATGGTGGAGCTTTAATTCCTGGGCATAACGCTCATATTGCTAATCCAGAAGCTAAACCTTCCCTTTTGCCTCACCCTTCCTTATCAGATGCAGACTTTCAGTTTACTTGGAGAGCAGGTAAGGCCAGTATAGCAAAACCTGGCCCCTCCACAGCGTATAGTGCATCTCAGATAGTGGGCAGTGATGTTGATAAGTCTTCTCAAGTTCCTCTTGGTGTAGATGGAACAACTAATCGCCCTGTAAAGCAAATAAAATTAGAGGATGGAAAAGGCAGCCCTTTCTCAGCCGGAGGTCTAAGTGCATCAATAGGTACCAATGGATCTGGACAACTTGGAATTGTCTCAGATCCCAATCTGACGGGAAAGCAACTCTCTGAGAAACCAACTTCATTGCTTCCCCACAGTGTCGAGTCTGTACTACTGCAACAAGTTTTGAATCTAACTCCCGAACAGCTTAACTCGTTGCCACTCGAACAGAGGCTGCAAGTTATTGAGCTCCAGCACGCACTTCGCAGAGATCAAATGCGGCCATCCTAG

Protein sequence

RTFAQLRTPLIRVPIAELLCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPTPHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHPQLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRPPLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYSGHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIVGSDVDKSSQVPLGVDGTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSGQLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHALRRDQMRPS

Homology

[Close]

BLAST of Lsi08G006020 vs. ExPASy Swiss-Prot
Match: Q9M9G6 (Cleavage stimulating factor 64 OS=Arabidopsis thaliana OX=3702 GN=CSTF64 PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.1e-92
Identity = 237/537 (44.13%), Postives = 310/537 (57.73%), Query Frame = 0


Query: 21  SFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 80
           S Q +C+     +GNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDE
Sbjct: 5   SSQRRCV----FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 64

Query: 81  ETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVAN---ADAKKQLGGP 140
           ETALSARRNLQ YEINGRQLRVDFAENDKG D+ R+Q +GGPGL +     +++KQ+GGP
Sbjct: 65  ETALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGP 124

Query: 141 TPHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRS 200
               +S+ +Q +GLH+A TAA+V+AGALGG Q  S    S      +DPL LHLAK+SRS
Sbjct: 125 V---DSNMHQPVGLHLATTAASVIAGALGGPQVGSQFTQSNLQVPASDPLALHLAKMSRS 184

Query: 201 QLTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTH 260
           QLTEI+S +K MAT+NK+ ARQLL++RPQL KA+F +Q+MLG+V+PQVLQ PN+ Q  +H
Sbjct: 185 QLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVSPQVLQSPNIVQAPSH 244

Query: 261 PQLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQR 320
             +    IQ  Q S   +   LPPLA          ++  QLS       APH    SQ 
Sbjct: 245 --MTGSSIQDAQLSGQNL---LPPLA----------QRSQQLS------RAPH----SQY 304

Query: 321 PPLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQY 380
           P  QS  QP   +   L   PG SS+       N   R QV+V  +   +Q + P     
Sbjct: 305 PVQQSSKQPFSQIP-QLVAQPGPSSV-------NPPPRSQVKVENAPFQRQQVVPASTNI 364

Query: 381 SGHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQI 440
                  +P       N   +PS +PH +L ++  Q           + G + + +  + 
Sbjct: 365 GYSSQNSVP-------NNAIQPSQVPHQALPNSVMQ-----------QGGQTVSLNFGKR 424

Query: 441 VGSDVDKSSQVPLGVDGTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSGQLGIVSDPN 500
           +       S          NRP K +K+ED + +    G +S S+  N            
Sbjct: 425 INEGPPHQSM---------NRPSKMMKVEDRRTTSLPGGHVSNSMLPN------------ 457

Query: 501 LTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHALRRDQM 555
                 ++ P + +   V+S LLQQV+NLTPEQL  L  EQ+ +V++LQ AL++D M
Sbjct: 485 -----QAQAPQTHISPDVQSTLLQQVMNLTPEQLRLLTPEQQQEVLKLQQALKQDHM 457

[Close]

BLAST of Lsi08G006020 vs. ExPASy Swiss-Prot
Match: Q8BIQ5 (Cleavage stimulation factor subunit 2 OS=Mus musculus OX=10090 GN=Cstf2 PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 4.2e-32
Identity = 130/422 (30.81%), Postives = 188/422 (44.55%), Query Frame = 0


Query: 33  IGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 92
           +GNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G
Sbjct: 20  VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 79

Query: 93  YEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPTPHGESSQYQSIGLH 152
            E +GR LRVD A ++K  +  +  G G P +             +P+GES         
Sbjct: 80  REFSGRALRVDNAASEKNKEELKSLGTGAPVI------------ESPYGES--------- 139

Query: 153 IAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKAMATE 212
                              S ++  +S       ++  +A L   Q+ E+M  +K     
Sbjct: 140 ------------------ISPEDAPES-------ISKAVASLPPEQMFELMKQMKLCVQN 199

Query: 213 NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQP------STHPQLPLHEIQ 272
           +   AR +LL  PQL+ AL Q+Q+++ +V P++  K   RQ       S +PQ P+H   
Sbjct: 200 SPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLISGNPQ-PVHVAG 259

Query: 273 QGQSSSLQIQPGLPPLAPNRMQTGFV------PKKETQLSLTPQNPLAPHQFSASQRPPL 332
            G   ++ +     P AP     G +      P  +  +   P    AP Q +A+   P 
Sbjct: 260 PGSGPNVSMNQ-QNPQAPQAQSLGGMHVNGAPPMMQASM---PGGVPAPVQMAAAVGGPG 319

Query: 333 QSQIQPSHALQGALTGMPGGSSLP----SISLQGNISVRQQ----VQVPTSSSL------ 392
              + P+  +Q A  GM G   +P     + +Q   +  Q+      VPT   L      
Sbjct: 320 PGSLAPAGVMQ-AQVGMQGAGPVPMERGQVPMQDPRAAMQRGALPTNVPTPRGLLGDAPN 379

Query: 393 ----------------KQHMRPPPQQYSGHGGALIPGHNAHIANP---EAKPSLLPHPSL 410
                           + ++ PPP  + G     +PGH      P      P   P P +
Sbjct: 380 DPRGGTLMTVTGDVEPRAYLGPPPPPHQGPPMHHVPGHEGRGPPPHDMRGGPLAEPRPLM 389

[Close]

BLAST of Lsi08G006020 vs. ExPASy Swiss-Prot
Match: Q8HXM1 (Cleavage stimulation factor subunit 2 OS=Bos taurus OX=9913 GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.1e-32
Identity = 126/407 (30.96%), Postives = 176/407 (43.24%), Query Frame = 0


Query: 33  IGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 92
           +GNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G
Sbjct: 20  VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 79

Query: 93  YEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPTPHGESSQYQSIGLH 152
            E +GR LRVD A ++K  +  +  G G P +             +P+GE+         
Sbjct: 80  REFSGRALRVDNAASEKNKEELKSLGTGAPVI------------ESPYGET--------- 139

Query: 153 IAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKAMATE 212
                              S ++  +S       ++  +A L   Q+ E+M  +K     
Sbjct: 140 ------------------ISPEDAPES-------ISKAVASLPPEQMFELMKQMKLCVQN 199

Query: 213 NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPST------HPQLPLHEIQ 272
           +   AR +LL  PQL+ AL Q+Q+++ +V P++  K   RQ +       +PQ  +H   
Sbjct: 200 SPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQ-TVHSAG 259

Query: 273 QGQSSSLQIQP-----------------GLPPLAPNRMQTGFVPKKETQLSLTPQNP--L 332
            G  SS+ +                   G PPL    +Q G     +   ++T   P  L
Sbjct: 260 PGSGSSVSMNQQNPQTPQAQTLSGMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSL 319

Query: 333 AP--------------------------HQFSASQRPPLQSQIQPSHALQGALTGMPGGS 389
           AP                             +A QR PL + +     L G     P G 
Sbjct: 320 APAGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGPLPANVPTPRGLLGDAPNDPRGG 370

[Close]

BLAST of Lsi08G006020 vs. ExPASy Swiss-Prot
Match: P33240 (Cleavage stimulation factor subunit 2 OS=Homo sapiens OX=9606 GN=CSTF2 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-31
Identity = 130/424 (30.66%), Postives = 181/424 (42.69%), Query Frame = 0


Query: 33  IGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 92
           +GNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G
Sbjct: 20  VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 79

Query: 93  YEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPTPHGESSQYQSIGLH 152
            E +GR LRVD A ++K  +  +  G G P +             +P+GE+         
Sbjct: 80  REFSGRALRVDNAASEKNKEELKSLGTGAPVI------------ESPYGET--------- 139

Query: 153 IAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKAMATE 212
                              S ++  +S       ++  +A L   Q+ E+M  +K     
Sbjct: 140 ------------------ISPEDAPES-------ISKAVASLPPEQMFELMKQMKLCVQN 199

Query: 213 NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPST------HPQLPLHEIQ 272
           +   AR +LL  PQL+ AL Q+Q+++ +V P++  K   RQ +       +PQ P+H   
Sbjct: 200 SPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQ-PVHGAG 259

Query: 273 QGQSSSLQIQP-----------------GLPPLAPNRMQTGFVPKKETQLSLTPQNP--L 332
            G  S++ +                   G PPL    MQ G     +   ++T   P  L
Sbjct: 260 PGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSL 319

Query: 333 AP--------------------------HQFSASQRPPLQSQIQPSHALQGALTGMPGGS 392
           AP                             +A QR  L + +     L G     P G 
Sbjct: 320 APGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGG 379

Query: 393 SLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYSGHGGALIPGHNAHIANPEAKPSL 406
           +L  +S+ G +  R  +  P       H  PP     GH     P H       E +   
Sbjct: 380 TL--LSVTGEVEPRGYLGPP-------HQGPPMHHVPGHESRGPPPH-------ELRGGP 380

[Close]

BLAST of Lsi08G006020 vs. ExPASy Swiss-Prot
Match: Q5RDA3 (Cleavage stimulation factor subunit 2 OS=Pongo abelii OX=9601 GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-31
Identity = 130/424 (30.66%), Postives = 181/424 (42.69%), Query Frame = 0


Query: 33  IGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 92
           +GNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G
Sbjct: 20  VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 79

Query: 93  YEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPTPHGESSQYQSIGLH 152
            E +GR LRVD A ++K  +  +  G G P +             +P+GE+         
Sbjct: 80  REFSGRALRVDNAASEKNKEELKSLGTGAPVI------------ESPYGET--------- 139

Query: 153 IAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQLTEIMSGLKAMATE 212
                              S ++  +S       ++  +A L   Q+ E+M  +K     
Sbjct: 140 ------------------ISPEDAPES-------ISKAVASLPPEQMFELMKQMKLCVQN 199

Query: 213 NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPST------HPQLPLHEIQ 272
           +   AR +LL  PQL+ AL Q+Q+++ +V P++  K   RQ +       +PQ P+H   
Sbjct: 200 SPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQ-PVHGAG 259

Query: 273 QGQSSSLQIQP-----------------GLPPLAPNRMQTGFVPKKETQLSLTPQNP--L 332
            G  S++ +                   G PPL    MQ G     +   ++T   P  L
Sbjct: 260 PGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQIPAAVTGPGPGSL 319

Query: 333 AP--------------------------HQFSASQRPPLQSQIQPSHALQGALTGMPGGS 392
           AP                             +A QR  L + +     L G     P G 
Sbjct: 320 APGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGG 379

Query: 393 SLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYSGHGGALIPGHNAHIANPEAKPSL 406
           +L  +S+ G +  R  +  P       H  PP     GH     P H       E +   
Sbjct: 380 TL--LSVTGEVEPRGYLGPP-------HQGPPMHHVPGHESRGPPPH-------ELRGGP 380

[Close]

BLAST of Lsi08G006020 vs. ExPASy TrEMBL
Match: A0A5D3BZN4 (Cleavage stimulating factor 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00590 PE=4 SV=1)

HSP 1 Score: 894.0 bits (2309), Expect = 3.1e-256
Identity = 476/549 (86.70%), Postives = 494/549 (89.98%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
           PHG+SSQ+Q IGLHIAITAAAVMAGALGGAQAASNQNT QSA MPNDPLTLHLAKLSRSQ
Sbjct: 121 PHGDSSQHQPIGLHIAITAAAVMAGALGGAQAASNQNTLQSATMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLKAMAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNL+Q +THP
Sbjct: 181 LTEVMSGLKAMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLQQSATHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLHEIQQGQ SS+QIQPGLPPLAPNRMQTGF+PKKETQLSLTPQNPLAPHQFSAS RP
Sbjct: 241 QLPLHEIQQGQPSSVQIQPGLPPLAPNRMQTGFLPKKETQLSLTPQNPLAPHQFSASLRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
            LQSQIQPSH LQGALTG+PGGSSLPSI+LQGNIS+RQQVQ PTSSSLKQHMRPPPQQY 
Sbjct: 301 SLQSQIQPSHTLQGALTGIPGGSSLPSINLQGNISIRQQVQAPTSSSLKQHMRPPPQQYL 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGALIPGHNAHI NPEAKPSLLPHPS+SD DFQ            PGPSTAYS  QIV
Sbjct: 361 GHGGALIPGHNAHITNPEAKPSLLPHPSISDVDFQ------------PGPSTAYSTPQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSDVDKSS VPLGVD          GTTNRPVKQIKLEDGKGSPFSAGGLS SIGTNGSG
Sbjct: 421 GSDVDKSSPVPLGVDGKRTMLHGFSGTTNRPVKQIKLEDGKGSPFSAGGLSTSIGTNGSG 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPN+TG QLSEKPTSLLP +VESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA
Sbjct: 481 QLGIASDPNVTGTQLSEKPTSLLPQNVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 527

[Close]

BLAST of Lsi08G006020 vs. ExPASy TrEMBL
Match: A0A1S3C3F6 (cleavage stimulating factor 64 OS=Cucumis melo OX=3656 GN=LOC103496563 PE=4 SV=1)

HSP 1 Score: 894.0 bits (2309), Expect = 3.1e-256
Identity = 476/549 (86.70%), Postives = 494/549 (89.98%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
           PHG+SSQ+Q IGLHIAITAAAVMAGALGGAQAASNQNT QSA MPNDPLTLHLAKLSRSQ
Sbjct: 121 PHGDSSQHQPIGLHIAITAAAVMAGALGGAQAASNQNTLQSATMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLKAMAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNL+Q +THP
Sbjct: 181 LTEVMSGLKAMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLQQSATHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLHEIQQGQ SS+QIQPGLPPLAPNRMQTGF+PKKETQLSLTPQNPLAPHQFSAS RP
Sbjct: 241 QLPLHEIQQGQPSSVQIQPGLPPLAPNRMQTGFLPKKETQLSLTPQNPLAPHQFSASLRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
            LQSQIQPSH LQGALTG+PGGSSLPSI+LQGNIS+RQQVQ PTSSSLKQHMRPPPQQY 
Sbjct: 301 SLQSQIQPSHTLQGALTGIPGGSSLPSINLQGNISIRQQVQAPTSSSLKQHMRPPPQQYL 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGALIPGHNAHI NPEAKPSLLPHPS+SD DFQ            PGPSTAYS  QIV
Sbjct: 361 GHGGALIPGHNAHITNPEAKPSLLPHPSISDVDFQ------------PGPSTAYSTPQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSDVDKSS VPLGVD          GTTNRPVKQIKLEDGKGSPFSAGGLS SIGTNGSG
Sbjct: 421 GSDVDKSSPVPLGVDGKRTMLHGFSGTTNRPVKQIKLEDGKGSPFSAGGLSTSIGTNGSG 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPN+TG QLSEKPTSLLP +VESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA
Sbjct: 481 QLGIASDPNVTGTQLSEKPTSLLPQNVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 527

[Close]

BLAST of Lsi08G006020 vs. ExPASy TrEMBL
Match: A0A0A0KCI7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G052670 PE=4 SV=1)

HSP 1 Score: 884.0 bits (2283), Expect = 3.2e-253
Identity = 473/549 (86.16%), Postives = 489/549 (89.07%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASTQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
           PHGE+SQ+Q IGLHIAITAAAVMAGALGGAQAASNQN  QSA MPNDPLTLHLAKLSRSQ
Sbjct: 121 PHGEASQHQPIGLHIAITAAAVMAGALGGAQAASNQNNLQSATMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLKAMAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNL+Q +THP
Sbjct: 181 LTEVMSGLKAMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLQQSATHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLHE QQGQ SSLQIQPGLPPLAPNRMQTGFVPKKETQ SL PQNPLAPHQFSASQRP
Sbjct: 241 QLPLHESQQGQPSSLQIQPGLPPLAPNRMQTGFVPKKETQSSLMPQNPLAPHQFSASQRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
            LQSQIQPSH LQG+LTG+PGGSSLPSISLQGNIS+RQQVQ P+SSSLKQHMRPPPQQY 
Sbjct: 301 SLQSQIQPSHTLQGSLTGIPGGSSLPSISLQGNISIRQQVQAPSSSSLKQHMRPPPQQYL 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGALIPGHN HI NPEAKPSLLPHPSLSDADFQ            PGPSTAYS  QIV
Sbjct: 361 GHGGALIPGHNTHITNPEAKPSLLPHPSLSDADFQ------------PGPSTAYSTPQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSDVDKSS VPLGVD          GTTNRPVKQIKLEDGKGS F AGGLS SIGTNGSG
Sbjct: 421 GSDVDKSSPVPLGVDGKRTMLHGFSGTTNRPVKQIKLEDGKGSSFLAGGLSTSIGTNGSG 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPN+TG QLSEKPTSLLP +VESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA
Sbjct: 481 QLGIASDPNVTGTQLSEKPTSLLPQNVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 527

[Close]

BLAST of Lsi08G006020 vs. ExPASy TrEMBL
Match: A0A6J1HJJ0 (cleavage stimulating factor 64 OS=Cucurbita moschata OX=3662 GN=LOC111464146 PE=4 SV=1)

HSP 1 Score: 853.6 bits (2204), Expect = 4.6e-244
Identity = 458/549 (83.42%), Postives = 479/549 (87.25%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLV NA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVTNA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
            HGESSQ Q IGLHIAITAAAVMAGALGGAQAASNQN  QS  MPNDPLTLHLAKLSRSQ
Sbjct: 121 AHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLK MAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQ PNLRQPSTHP
Sbjct: 181 LTEVMSGLKVMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQNPNLRQPSTHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLH+IQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQ+S+TPQNPLAPHQFSASQRP
Sbjct: 241 QLPLHDIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQVSITPQNPLAPHQFSASQRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
           PLQSQIQP+ AL G LTG+PGGS LPS+SL G++SVRQQVQVPTS+SLKQHMRPP QQYS
Sbjct: 301 PLQSQIQPALALHGTLTGIPGGSLLPSVSLPGSMSVRQQVQVPTSASLKQHMRPPSQQYS 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGA+IPGHNA IANPEAKPSLLP PSL DADFQ            PG S AY ASQIV
Sbjct: 361 GHGGAVIPGHNAQIANPEAKPSLLPRPSLPDADFQ------------PGSSAAYGASQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSD DKSSQV LGVD          GTTNRPVKQIKLEDGKGSPFS GGLSAS+G NG+ 
Sbjct: 421 GSDADKSSQVLLGVDGKRKIPHGFSGTTNRPVKQIKLEDGKGSPFSTGGLSASVGNNGAR 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPNL G Q+SEKPTS+LPH VES LLQQVLNLTPEQLNSLPLEQR QVI+LQ A
Sbjct: 481 QLGIASDPNLPGIQISEKPTSMLPHDVESALLQQVLNLTPEQLNSLPLEQRQQVIQLQQA 527

[Close]

BLAST of Lsi08G006020 vs. ExPASy TrEMBL
Match: A0A6J1JSX2 (cleavage stimulating factor 64 OS=Cucurbita maxima OX=3661 GN=LOC111487220 PE=4 SV=1)

HSP 1 Score: 847.8 bits (2189), Expect = 2.5e-242
Identity = 458/549 (83.42%), Postives = 477/549 (86.89%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLV NA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVTNA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
            HGESSQ Q IGLHIAITAAAVMAGALGGAQAASNQN  QS  MPNDPLTLHLAKLSRSQ
Sbjct: 121 AHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE +SGLK MAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQ PNLRQPSTHP
Sbjct: 181 LTEALSGLKVMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQNPNLRQPSTHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLH+IQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQ+S TPQNPLAPHQFSASQR 
Sbjct: 241 QLPLHDIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQVSFTPQNPLAPHQFSASQRL 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
           PLQSQIQPS ALQG LTG+PGGS LPS+SL G++SVRQQVQVPTS+SLKQHMRPP QQYS
Sbjct: 301 PLQSQIQPSLALQGTLTGIPGGSLLPSVSLPGSMSVRQQVQVPTSASLKQHMRPPSQQYS 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHG A+IPGHNA IANPEAKPSLLP PSL DADFQ            PG S AY ASQIV
Sbjct: 361 GHGEAVIPGHNAQIANPEAKPSLLPRPSLPDADFQ------------PGSSAAYGASQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSD DKSSQV LGVD          GTTNRPVKQIKLEDGKGSPFSAGGLSAS+G NG+ 
Sbjct: 421 GSDADKSSQVLLGVDGKRKIPHGFSGTTNRPVKQIKLEDGKGSPFSAGGLSASVGNNGAR 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPNL G Q+SEKPTS+LPH VES LLQQVLNLTPEQLNSLPLEQR QVI+LQ A
Sbjct: 481 QLGIASDPNLPGIQISEKPTSMLPHDVESALLQQVLNLTPEQLNSLPLEQRQQVIQLQQA 527

[Close]

BLAST of Lsi08G006020 vs. NCBI nr
Match: XP_008456694.1 (PREDICTED: cleavage stimulating factor 64 [Cucumis melo] >KAA0031656.1 cleavage stimulating factor 64 [Cucumis melo var. makuwa] >TYK04454.1 cleavage stimulating factor 64 [Cucumis melo var. makuwa])

HSP 1 Score: 894.0 bits (2309), Expect = 6.4e-256
Identity = 476/549 (86.70%), Postives = 494/549 (89.98%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
           PHG+SSQ+Q IGLHIAITAAAVMAGALGGAQAASNQNT QSA MPNDPLTLHLAKLSRSQ
Sbjct: 121 PHGDSSQHQPIGLHIAITAAAVMAGALGGAQAASNQNTLQSATMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLKAMAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNL+Q +THP
Sbjct: 181 LTEVMSGLKAMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLQQSATHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLHEIQQGQ SS+QIQPGLPPLAPNRMQTGF+PKKETQLSLTPQNPLAPHQFSAS RP
Sbjct: 241 QLPLHEIQQGQPSSVQIQPGLPPLAPNRMQTGFLPKKETQLSLTPQNPLAPHQFSASLRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
            LQSQIQPSH LQGALTG+PGGSSLPSI+LQGNIS+RQQVQ PTSSSLKQHMRPPPQQY 
Sbjct: 301 SLQSQIQPSHTLQGALTGIPGGSSLPSINLQGNISIRQQVQAPTSSSLKQHMRPPPQQYL 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGALIPGHNAHI NPEAKPSLLPHPS+SD DFQ            PGPSTAYS  QIV
Sbjct: 361 GHGGALIPGHNAHITNPEAKPSLLPHPSISDVDFQ------------PGPSTAYSTPQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSDVDKSS VPLGVD          GTTNRPVKQIKLEDGKGSPFSAGGLS SIGTNGSG
Sbjct: 421 GSDVDKSSPVPLGVDGKRTMLHGFSGTTNRPVKQIKLEDGKGSPFSAGGLSTSIGTNGSG 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPN+TG QLSEKPTSLLP +VESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA
Sbjct: 481 QLGIASDPNVTGTQLSEKPTSLLPQNVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 527

[Close]

BLAST of Lsi08G006020 vs. NCBI nr
Match: XP_038885247.1 (LOW QUALITY PROTEIN: cleavage stimulating factor 64 [Benincasa hispida])

HSP 1 Score: 888.3 bits (2294), Expect = 3.5e-254
Identity = 481/549 (87.61%), Postives = 496/549 (90.35%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQE GPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEXGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
           P GESSQ+Q IGLHIAITAAAVMAG+LGGAQAAS+QNT QSA MPNDPLTLHLAKLSRSQ
Sbjct: 121 PQGESSQHQPIGLHIAITAAAVMAGSLGGAQAASSQNTLQSATMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLKAMAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNL QPSTH 
Sbjct: 181 LTEVMSGLKAMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLWQPSTHT 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           +LPLHEIQQGQ SSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSAS RP
Sbjct: 241 RLPLHEIQQGQPSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSAS-RP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
           PLQSQIQPSHALQG+LTG+PGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMR PPQQYS
Sbjct: 301 PLQSQIQPSHALQGSLTGIPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMR-PPQQYS 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQ            PGPSTAY AS IV
Sbjct: 361 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQ------------PGPSTAYGASPIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSDVDKSSQVPLGVD          GTTNRPVKQIKLEDGKGSPFSAGGLSAS+GTNGSG
Sbjct: 421 GSDVDKSSQVPLGVDGKRNVLHGFSGTTNRPVKQIKLEDGKGSPFSAGGLSASLGTNGSG 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPNL G Q SEKPTSLLPH+VESVLLQQVLNLTPEQLN LPLEQRLQV+ELQHA
Sbjct: 481 QLGISSDPNLAGTQHSEKPTSLLPHNVESVLLQQVLNLTPEQLNLLPLEQRLQVVELQHA 525

[Close]

BLAST of Lsi08G006020 vs. NCBI nr
Match: XP_004141001.1 (cleavage stimulating factor 64 [Cucumis sativus])

HSP 1 Score: 884.0 bits (2283), Expect = 6.6e-253
Identity = 473/549 (86.16%), Postives = 489/549 (89.07%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASTQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
           PHGE+SQ+Q IGLHIAITAAAVMAGALGGAQAASNQN  QSA MPNDPLTLHLAKLSRSQ
Sbjct: 121 PHGEASQHQPIGLHIAITAAAVMAGALGGAQAASNQNNLQSATMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLKAMAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNL+Q +THP
Sbjct: 181 LTEVMSGLKAMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLQQSATHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLHE QQGQ SSLQIQPGLPPLAPNRMQTGFVPKKETQ SL PQNPLAPHQFSASQRP
Sbjct: 241 QLPLHESQQGQPSSLQIQPGLPPLAPNRMQTGFVPKKETQSSLMPQNPLAPHQFSASQRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
            LQSQIQPSH LQG+LTG+PGGSSLPSISLQGNIS+RQQVQ P+SSSLKQHMRPPPQQY 
Sbjct: 301 SLQSQIQPSHTLQGSLTGIPGGSSLPSISLQGNISIRQQVQAPSSSSLKQHMRPPPQQYL 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGALIPGHN HI NPEAKPSLLPHPSLSDADFQ            PGPSTAYS  QIV
Sbjct: 361 GHGGALIPGHNTHITNPEAKPSLLPHPSLSDADFQ------------PGPSTAYSTPQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSDVDKSS VPLGVD          GTTNRPVKQIKLEDGKGS F AGGLS SIGTNGSG
Sbjct: 421 GSDVDKSSPVPLGVDGKRTMLHGFSGTTNRPVKQIKLEDGKGSSFLAGGLSTSIGTNGSG 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPN+TG QLSEKPTSLLP +VESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA
Sbjct: 481 QLGIASDPNVTGTQLSEKPTSLLPQNVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 527

[Close]

BLAST of Lsi08G006020 vs. NCBI nr
Match: XP_023550987.1 (cleavage stimulating factor 64 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 858.2 bits (2216), Expect = 3.9e-245
Identity = 461/549 (83.97%), Postives = 480/549 (87.43%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLV NA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVTNA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
            HGESSQ Q IGLHIAITAAAVMAGALGGAQAASNQN  QS  MPNDPLTLHLAKLSRSQ
Sbjct: 121 AHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE MSGLK MAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQ PNLRQPSTHP
Sbjct: 181 LTEAMSGLKVMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQNPNLRQPSTHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLH+IQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQ+SLTPQNPLAPHQFSASQRP
Sbjct: 241 QLPLHDIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQVSLTPQNPLAPHQFSASQRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
           PLQSQIQPS ALQG LTG+PGGS LPS+SL G++SVRQQVQVPTS+SLKQHMRPP QQYS
Sbjct: 301 PLQSQIQPSLALQGTLTGIPGGSLLPSVSLPGSMSVRQQVQVPTSASLKQHMRPPSQQYS 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGA+IPGHNA IANPEAKPSLLP PSL DADFQ            PG S AY ASQIV
Sbjct: 361 GHGGAVIPGHNAQIANPEAKPSLLPRPSLPDADFQ------------PGSSAAYGASQIV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSD D+SSQVPLGVD          GTTNRPVK IKLEDGKGSPFSAGGLSAS+G NG+ 
Sbjct: 421 GSDADRSSQVPLGVDGKRKIPHGFSGTTNRPVKHIKLEDGKGSPFSAGGLSASVGNNGAR 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPNL G Q+SEKPTS+LPH VES LLQQVLNLTPEQLNSLPLEQR QVI+LQ A
Sbjct: 481 QLGIASDPNLPGIQISEKPTSMLPHDVESALLQQVLNLTPEQLNSLPLEQRQQVIQLQQA 527

[Close]

BLAST of Lsi08G006020 vs. NCBI nr
Match: KAG6602216.1 (Cleavage stimulating factor 64, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 854.4 bits (2206), Expect = 5.6e-244
Identity = 458/549 (83.42%), Postives = 480/549 (87.43%), Query Frame = 0


Query: 19  LCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 78
           + S Q +C+     +GNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK
Sbjct: 1   MASSQHRCV----FVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYK 60

Query: 79  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVANADAKKQLGGPT 138
           DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLV NA      GGPT
Sbjct: 61  DEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVTNA------GGPT 120

Query: 139 PHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRSQ 198
            HGESSQ Q IGLHIAITAAAVMAGALGGAQAASNQN  QS  MPNDPLTLHLAKLSRSQ
Sbjct: 121 AHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQ 180

Query: 199 LTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTHP 258
           LTE+MSGLK MAT+NKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQ PNLRQPSTHP
Sbjct: 181 LTEVMSGLKVMATQNKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQNPNLRQPSTHP 240

Query: 259 QLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQRP 318
           QLPLH+IQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQ+S+TPQNPLAPHQFSASQRP
Sbjct: 241 QLPLHDIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQVSITPQNPLAPHQFSASQRP 300

Query: 319 PLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQYS 378
           PLQSQIQP+ ALQG LTG+PGGS LPS+SL G++SVRQQVQVPTS+SLKQHMRPP QQYS
Sbjct: 301 PLQSQIQPALALQGTLTGIPGGSLLPSVSLPGSMSVRQQVQVPTSASLKQHMRPPSQQYS 360

Query: 379 GHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIV 438
           GHGGA+IPGHNA IANPEAKPSLLP PSL DADFQ            PG S AY ASQ+V
Sbjct: 361 GHGGAVIPGHNAQIANPEAKPSLLPRPSLPDADFQ------------PGSSAAYGASQMV 420

Query: 439 GSDVDKSSQVPLGVD----------GTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSG 498
           GSD DKSSQV LGVD          GTTNRPVKQIKLEDGKGSPFS GGLSAS+G NG+ 
Sbjct: 421 GSDADKSSQVLLGVDGKRKIPHGFSGTTNRPVKQIKLEDGKGSPFSTGGLSASVGNNGAR 480

Query: 499 QLGIVSDPNLTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHA 558
           QLGI SDPNL G Q+SEKPTS+LPH VES LLQQVLNLTPEQLNSLPLEQR QVI+LQ A
Sbjct: 481 QLGIASDPNLPGIQISEKPTSMLPHDVESALLQQVLNLTPEQLNSLPLEQRQQVIQLQQA 527

[Close]

BLAST of Lsi08G006020 vs. TAIR 10
Match: AT1G71800.1 (cleavage stimulating factor 64 )

HSP 1 Score: 341.3 bits (874), Expect = 1.5e-93
Identity = 237/537 (44.13%), Postives = 310/537 (57.73%), Query Frame = 0


Query: 21  SFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 80
           S Q +C+     +GNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDE
Sbjct: 5   SSQRRCV----FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 64

Query: 81  ETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLVAN---ADAKKQLGGP 140
           ETALSARRNLQ YEINGRQLRVDFAENDKG D+ R+Q +GGPGL +     +++KQ+GGP
Sbjct: 65  ETALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGP 124

Query: 141 TPHGESSQYQSIGLHIAITAAAVMAGALGGAQAASNQNTSQSAAMPNDPLTLHLAKLSRS 200
               +S+ +Q +GLH+A TAA+V+AGALGG Q  S    S      +DPL LHLAK+SRS
Sbjct: 125 V---DSNMHQPVGLHLATTAASVIAGALGGPQVGSQFTQSNLQVPASDPLALHLAKMSRS 184

Query: 201 QLTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVLQKPNLRQPSTH 260
           QLTEI+S +K MAT+NK+ ARQLL++RPQL KA+F +Q+MLG+V+PQVLQ PN+ Q  +H
Sbjct: 185 QLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVSPQVLQSPNIVQAPSH 244

Query: 261 PQLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNPLAPHQFSASQR 320
             +    IQ  Q S   +   LPPLA          ++  QLS       APH    SQ 
Sbjct: 245 --MTGSSIQDAQLSGQNL---LPPLA----------QRSQQLS------RAPH----SQY 304

Query: 321 PPLQSQIQPSHALQGALTGMPGGSSLPSISLQGNISVRQQVQVPTSSSLKQHMRPPPQQY 380
           P  QS  QP   +   L   PG SS+       N   R QV+V  +   +Q + P     
Sbjct: 305 PVQQSSKQPFSQIP-QLVAQPGPSSV-------NPPPRSQVKVENAPFQRQQVVPASTNI 364

Query: 381 SGHGGALIPGHNAHIANPEAKPSLLPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQI 440
                  +P       N   +PS +PH +L ++  Q           + G + + +  + 
Sbjct: 365 GYSSQNSVP-------NNAIQPSQVPHQALPNSVMQ-----------QGGQTVSLNFGKR 424

Query: 441 VGSDVDKSSQVPLGVDGTTNRPVKQIKLEDGKGSPFSAGGLSASIGTNGSGQLGIVSDPN 500
           +       S          NRP K +K+ED + +    G +S S+  N            
Sbjct: 425 INEGPPHQSM---------NRPSKMMKVEDRRTTSLPGGHVSNSMLPN------------ 457

Query: 501 LTGKQLSEKPTSLLPHSVESVLLQQVLNLTPEQLNSLPLEQRLQVIELQHALRRDQM 555
                 ++ P + +   V+S LLQQV+NLTPEQL  L  EQ+ +V++LQ AL++D M
Sbjct: 485 -----QAQAPQTHISPDVQSTLLQQVMNLTPEQLRLLTPEQQQEVLKLQQALKQDHM 457

[Close]

BLAST of Lsi08G006020 vs. TAIR 10
Match: AT1G73840.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-14
Identity = 109/391 (27.88%), Postives = 159/391 (40.66%), Query Frame = 0


Query: 187 LTLHLAKLSRSQLTEIMSGLKAMATENKDLARQLLLARPQLSKALFQSQIMLGMVTPQVL 246
           L  +LA +++SQL +IMS +K +  +N   AR++L+  P L+KALFQ+QIMLGMV P   
Sbjct: 12  LPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQIMLGMVQP--- 71

Query: 247 QKPNLRQPSTHPQLPLHEIQQGQSSSLQIQPGLPPLAPNRMQTGFVPKKETQLSLTPQNP 306
                  P   P++    +QQ Q S   I P     A      G     E   ++ PQ P
Sbjct: 72  -------PQVTPKVEPQAVQQPQQSHQSIPPKPNVQAHMSSFQGGGSVHEPANTMQPQAP 131

Query: 307 LAPH---QFSASQRPP-------LQSQIQPSH-ALQGALTGMPGGSSLPSISLQGNISVR 366
           +  H   Q      PP        QSQ + SH   QG L       S P  S   N    
Sbjct: 132 IRKHPTPQPMPMPPPPPSVSANSAQSQPRFSHPQRQGHLNPAVTSMSHPQSSQVQNAPPP 191

Query: 367 QQVQVPTSSSLKQHMRPPPQQYSGHGGALIPGHNAHIANPEAKP--------------SL 426
                 +      H+  P          +  G   H+A  +++P                
Sbjct: 192 ASHHPTSQQPPFHHLDIPASSTQLQQQPMHSGGGPHVAQQQSRPYHHQYGQAQTGPNTGF 251

Query: 427 LPHPSLSDADFQFTWRAGKASIAKPGPSTAYSASQIVGSDVDKSSQVPLGVDGTTNRPVK 486
             H + +    Q  + +G    A  GP        +      +      G     N  + 
Sbjct: 252 QHHGAPTQHLSQPMYHSGNRPPASGGPQFPQGQPHLPSQPTYQGGGQYRG--DYNNNQLA 311

Query: 487 QIKLEDGKGSPFSAGGLSASIGTNGSGQLGIVSDPNLTGKQLSEKP-TSLLPHSVESVLL 546
            +  +D +G  + AG   +S  T+  G LG V  P+  G      P  + +   +E  LL
Sbjct: 312 GLMAQD-RGPSWMAGQSESSNITHLPG-LGPVPPPSQVGPGGGPPPRPAPISAEMEKALL 371

Query: 547 QQVLNLTPEQLNSLPLEQRLQVIELQHALRR 552
           QQV++LTPEQ+N LP EQR QV++LQ  LR+
Sbjct: 372 QQVMSLTPEQINLLPPEQRNQVLQLQQILRQ 388

[Close]

BLAST of Lsi08G006020 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-11
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 14  PIAELLCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYG 73
           P+  +L S  L+ +S +  +G + +   +  L +     G V    ++ DRETG+ +G+G
Sbjct: 22  PVTSMLGS--LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFG 81

Query: 74  FCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 124
           F  +  E++A +A + + G E+NGRQ+RV+ A     A R+   G GG G
Sbjct: 82  FVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGGGGYG 129

[Close]

BLAST of Lsi08G006020 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-11
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 14  PIAELLCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYG 73
           P+  +L S  L+ +S +  +G + +   +  L +     G V    ++ DRETG+ +G+G
Sbjct: 22  PVTSMLGS--LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFG 81

Query: 74  FCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 124
           F  +  E++A +A + + G E+NGRQ+RV+ A     A R+   G GG G
Sbjct: 82  FVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGGGGYG 129

[Close]

BLAST of Lsi08G006020 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-11
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 13  VPIAELLCSFQLQCISGRRIIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGY 72
           VP+  +L S +L  +S +  IG + +   +  L +     G VV  ++++DRETG+ +G+
Sbjct: 21  VPVTSMLGSLRL--MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF 80

Query: 73  GFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 124
           GF  + DE  A +A   + G E+NGR +RV+ A +   A R    G G  G
Sbjct: 81  GFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSG 129

The following BLAST results are available for this feature:

BLAST of Lsi08G006020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9G6	2.1e-92	44.13	Cleavage stimulating factor 64 OS=Arabidopsis thaliana OX=3702 GN=CSTF64 PE=1 SV...	[more]
Q8BIQ5	4.2e-32	30.81	Cleavage stimulation factor subunit 2 OS=Mus musculus OX=10090 GN=Cstf2 PE=1 SV=...	[more]
Q8HXM1	7.1e-32	30.96	Cleavage stimulation factor subunit 2 OS=Bos taurus OX=9913 GN=CSTF2 PE=2 SV=1	[more]
P33240	2.7e-31	30.66	Cleavage stimulation factor subunit 2 OS=Homo sapiens OX=9606 GN=CSTF2 PE=1 SV=1	[more]
Q5RDA3	2.7e-31	30.66	Cleavage stimulation factor subunit 2 OS=Pongo abelii OX=9601 GN=CSTF2 PE=2 SV=1	[more]

BLAST of Lsi08G006020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZN4	3.1e-256	86.70	Cleavage stimulating factor 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3C3F6	3.1e-256	86.70	cleavage stimulating factor 64 OS=Cucumis melo OX=3656 GN=LOC103496563 PE=4 SV=1	[more]
A0A0A0KCI7	3.2e-253	86.16	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G052670 PE=4 SV...	[more]
A0A6J1HJJ0	4.6e-244	83.42	cleavage stimulating factor 64 OS=Cucurbita moschata OX=3662 GN=LOC111464146 PE=...	[more]
A0A6J1JSX2	2.5e-242	83.42	cleavage stimulating factor 64 OS=Cucurbita maxima OX=3661 GN=LOC111487220 PE=4 ...	[more]

BLAST of Lsi08G006020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456694.1	6.4e-256	86.70	PREDICTED: cleavage stimulating factor 64 [Cucumis melo] >KAA0031656.1 cleavage ...	[more]
XP_038885247.1	3.5e-254	87.61	LOW QUALITY PROTEIN: cleavage stimulating factor 64 [Benincasa hispida]	[more]
XP_004141001.1	6.6e-253	86.16	cleavage stimulating factor 64 [Cucumis sativus]	[more]
XP_023550987.1	3.9e-245	83.97	cleavage stimulating factor 64 [Cucurbita pepo subsp. pepo]	[more]
KAG6602216.1	5.6e-244	83.42	Cleavage stimulating factor 64, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi08G006020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71800.1	1.5e-93	44.13	cleavage stimulating factor 64	[more]
AT1G73840.1	3.1e-14	27.88	hydroxyproline-rich glycoprotein family protein	[more]
AT3G23830.1	5.4e-11	31.82	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	5.4e-11	31.82	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	5.4e-11	33.33	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 30..103 e-value: 9.1E-24 score: 95.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 33..101 e-value: 1.5E-20 score: 72.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 29..107 score: 17.711065
IPR038192	Transcription termination and cleavage factor, C-terminal domain superfamily	GENE3D	1.10.20.70		coord: 514..555 e-value: 2.7E-9 score: 38.3
IPR026896	Transcription termination and cleavage factor, C-terminal domain	PFAM	PF14304	CSTF_C	coord: 519..551 e-value: 1.5E-7 score: 30.9
IPR025742	Cleavage stimulation factor subunit 2, hinge domain	PFAM	PF14327	CSTF2_hinge	coord: 184..248 e-value: 6.2E-15 score: 55.4
None	No IPR available	GENE3D	1.25.40.630		coord: 173..249 e-value: 6.6E-8 score: 34.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..330
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 338..372
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..145
None	No IPR available	PANTHER	PTHR45735	CLEAVAGE STIMULATION FACTOR SUBUNIT 2	coord: 33..552
None	No IPR available	CDD	cd12671	RRM_CSTF2_CSTF2T	coord: 33..105 e-value: 6.26775E-49 score: 161.888
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 28..142 e-value: 3.6E-28 score: 100.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G006020.1	Lsi08G006020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042868	antisense RNA metabolic process
biological_process	GO:0048589	developmental growth
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0098789	pre-mRNA cleavage required for polyadenylation
biological_process	GO:0031124	mRNA 3'-end processing
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding