Lsi08G005760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G005760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Prolamin_like domain-containing protein
Location	chr08: 14040959 .. 14041360 (+)
RNA-Seq Expression	Lsi08G005760
Synteny	Lsi08G005760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGGGAAATAATAACACAATGGGAGCAATAGTGATTCTCTTATTGGCAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGATAAACGACAACTTCAATTCACCGATATGGAATGGATGGGTAGATGAGGATAGAGGAATAATTCTACGACCGTGTTTGGATAGGATGAAAAGTGTAAAATGTCAGGTGGAACTTTACAATTACTACTTCAATATAAGTAAGAAGGAATTGGATCTAAATTGTTGTGTCTTCGTCAAAGTCATGGGAAAGAAATGTGCACGAGCTTTTGCTAGTTGGTACCAGTTTTCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAGGTTTACACTAATTGTGCTAGAAGACTTGCTGCTCTCCCACCTGCACCATTTTAA

mRNA sequence

ATGGCAAAGGGAAATAATAACACAATGGGAGCAATAGTGATTCTCTTATTGGCAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGATAAACGACAACTTCAATTCACCGATATGGAATGGATGGGTAGATGAGGATAGAGGAATAATTCTACGACCGTGTTTGGATAGGATGAAAAGTGTAAAATGTCAGGTGGAACTTTACAATTACTACTTCAATATAAGTAAGAAGGAATTGGATCTAAATTGTTGTGTCTTCGTCAAAGTCATGGGAAAGAAATGTGCACGAGCTTTTGCTAGTTGGTACCAGTTTTCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAGGTTTACACTAATTGTGCTAGAAGACTTGCTGCTCTCCCACCTGCACCATTTTAA

Coding sequence (CDS)

ATGGCAAAGGGAAATAATAACACAATGGGAGCAATAGTGATTCTCTTATTGGCAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGATAAACGACAACTTCAATTCACCGATATGGAATGGATGGGTAGATGAGGATAGAGGAATAATTCTACGACCGTGTTTGGATAGGATGAAAAGTGTAAAATGTCAGGTGGAACTTTACAATTACTACTTCAATATAAGTAAGAAGGAATTGGATCTAAATTGTTGTGTCTTCGTCAAAGTCATGGGAAAGAAATGTGCACGAGCTTTTGCTAGTTGGTACCAGTTTTCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAGGTTTACACTAATTGTGCTAGAAGACTTGCTGCTCTCCCACCTGCACCATTTTAA

Protein sequence

MAKGNNNTMGAIVILLLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKSVKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVYTNCARRLAALPPAPF

Homology

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BLAST of Lsi08G005760 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 9   MGAIVILLLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKSVKCQVELY 68
           M AIVILL AINL+ LVQ S +++++NSPIW+GWVDEDRG  LRPCLDRM+S KCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 69  NYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVYTNCARRLAAL 128
           NYYFNISKKELDLNCCVFVKVMGKKCA+AF  WYQF GLEIYEPNPMKVY NC  RL A 
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 129 PPAPF 134
           PPAPF
Sbjct: 121 PPAPF 125

[Close]

BLAST of Lsi08G005760 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.9e-52
Identity = 97/135 (71.85%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MAKGNNNTMGAIVILLLAINLATLVQPSR--INDNFNSPIWNGWVDEDRGIILRPCLDRM 60
           MA G N   G + ILLLA+NLA LV PS   ++D++NSPIWNGWVDEDR   LRPCLD M
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSVKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVY 120
           KS KCQV+LYNYYFNISKKELDL CCVFVK+MGK CA AFA WY+F GLE+YEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 TNCARRLAALPPAPF 134
            NC  RL ALPP PF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of Lsi08G005760 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.7e-51
Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 7   NTMGAIVILLLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKSVKCQVE 66
           N M A+VILL AINLA LVQ S +++++NS IWN W+DEDR   LRPCLDRM+S KCQVE
Sbjct: 6   NAMRAMVILLSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKCQVE 65

Query: 67  LYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVYTNCARRLA 126
           LYNYYFNISKKELDLNCCVFVKVMGKKCA+AF  WYQF GLEIYEPNPMKVY NCA RL+
Sbjct: 66  LYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCATRLS 125

Query: 127 ALPPAP 133
           A PP P
Sbjct: 126 APPPTP 131

[Close]

BLAST of Lsi08G005760 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.0e-37
Identity = 76/131 (58.02%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   NNNTMGAIVIL---LLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKSV 64
           NN+T   +V++   LL ++   LVQPS ++DN  S IW+ W+DEDR   L PCL  M+S 
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVYTNC 124
           KCQVELYNYYFNISKKELDL+CCV+V  MGKKCA AF  W+ F  LE  +PNPMKVY NC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 ARRLAALPPAP 133
            +RL    P P
Sbjct: 122 FKRLTFPAPTP 132

[Close]

BLAST of Lsi08G005760 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.0e-32
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 1   MAKGNNNTMGAIVIL---LLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDR 60
           M K +N+T   ++++   LL ++   LV PS I+DN  S IW+GW+D+DR  IL  CL  
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSVKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKV 120
           MKS KCQVELYNYYFN SKKE+DL+CCV+V  +G++CA +F SW+   G +  +PNPMK+
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YTNCARRLAALPPAP 133
           Y NC +RL    PAP
Sbjct: 121 YNNCFKRLTV--PAP 133

[Close]

BLAST of Lsi08G005760 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.7e-53
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 9   MGAIVILLLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKSVKCQVELY 68
           M AIVILL AINL+ LVQ S +++++NSPIW+GWVDEDRG  LRPCLDRM+S KCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 69  NYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVYTNCARRLAAL 128
           NYYFNISKKELDLNCCVFVKVMGKKCA+AF  WYQF GLEIYEPNPMKVY NC  RL A 
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 129 PPAPF 134
           PPAPF
Sbjct: 121 PPAPF 125

[Close]

BLAST of Lsi08G005760 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-51
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 9   MGAIVILLLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKSVKCQVELY 68
           MGA+VILLLAINLA L QPS  +D++NSPIW+ WVDEDRGI LRPCLD MKS KCQVELY
Sbjct: 1   MGAMVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELY 60

Query: 69  NYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVYTNCARRLAAL 128
           NYYFNISKKELDLNCCVFVKVMGK+CARAFA W++F   E++E NPMKVY NC  RL AL
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDAL 120

Query: 129 PPAPF 134
           PPAPF
Sbjct: 121 PPAPF 125

[Close]

BLAST of Lsi08G005760 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 97/135 (71.85%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MAKGNNNTMGAIVILLLAINLATLVQPSR--INDNFNSPIWNGWVDEDRGIILRPCLDRM 60
           MA G N   G + ILLLA+NLA LV PS   ++D++NSPIWNGWVDEDR   LRPCLD M
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSVKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVY 120
           KS KCQV+LYNYYFNISKKELDL CCVFVK+MGK CA AFA WY+F GLE+YEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 TNCARRLAALPPAPF 134
            NC  RL ALPP PF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of Lsi08G005760 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 7.1e-44
Identity = 85/116 (73.28%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   MAKGNNNTMGAIVILLLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKS 60
           MA    N M A++ILL  INLA LVQP  +++++NS IWN W+DEDR   LRPCLDRM+S
Sbjct: 26  MANIKTNAMRAMLILLSTINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 85

Query: 61  VKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMK 117
            KCQVELYNYYFNISK+ELDLNCCVFVKVMGKKCA+AF  WYQF GLEIYEPNPMK
Sbjct: 86  AKCQVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMK 141

[Close]

BLAST of Lsi08G005760 vs. NCBI nr
Match: KAG6575251.1 (hypothetical protein SDJN03_25890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 75/129 (58.14%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1   MAKGNNNTMGAIVILLLAINLATLVQPSRINDNFNSPIWNGWVDEDRGIILRPCLDRMKS 60
           MAK   +T+GA+V+LLLA+NL   V+ ++ ND++NSPIW+ W+D  R   LRPCL+ MKS
Sbjct: 1   MAK-ETSTVGALVVLLLAVNLQVFVRLTKANDDYNSPIWDRWLDAGRAPYLRPCLNLMKS 60

Query: 61  VKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYQFSGLEIYEPNPMKVYTN 120
            KCQV+LYN YFNI KK++DLNCCVFVKVMG+ CAR FA  + +  LE+Y+PNPMK+Y  
Sbjct: 61  TKCQVQLYNNYFNIRKKKMDLNCCVFVKVMGENCARRFAGCFDYPSLEVYKPNPMKLYKT 120

Query: 121 CARRLAALP 130
           C  RL++ P
Sbjct: 121 CVARLSSKP 128

The following BLAST results are available for this feature:

BLAST of Lsi08G005760 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G005760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C280	1.8e-53	80.00	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TZR1	9.9e-52	71.85	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	1.7e-51	76.98	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A0A0KQ41	9.0e-37	58.02	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	3.0e-32	51.85	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of Lsi08G005760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046835.1	3.7e-53	80.00	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAG6578867.1	1.6e-51	78.40	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0046841.1	2.0e-51	71.85	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAE8646662.1	7.1e-44	73.28	hypothetical protein Csa_004797, partial [Cucumis sativus]	[more]
KAG6575251.1	2.0e-38	58.14	hypothetical protein SDJN03_25890, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi08G005760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 54..121 e-value: 3.9E-6 score: 26.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G005760.1	Lsi08G005760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity