Lsi08G005530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G005530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	U6 snRNA-associated Sm-like protein LSm3
Location	chr08: 13686761 .. 13689065 (-)
RNA-Seq Expression	Lsi08G005530
Synteny	Lsi08G005530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGAGTAGTATTGGGCCATCGGCGTTGGCATTTGGTTTTGGACTGCAATTCGATTTCGACGACTGTGGGGATCGGAAACTCATAAATCCCACTCTTCAGTTTGCGATTTCAGAGCTCCCAATACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGTACATTCTCCTTCATTGTTTCGTCGTTTTTCCCTTTTTTTGTTTATCTTCTCTGTTTCTTTTCTCTAATTATGTCGTCTCCCTATCTCTCTACCCCCTTTAATCGAATACCCCCAATTGTTGGGTTTTATAGTGTGTTTTTTTTCCCCTTTCGATCAAATGAATGTTCTGGAGAATTAGGGTTTTGTAATTGTTTTGAGTTTCTTGATGGGGTTCCCTTGAAATTTGCTTACACTCATTTTTGTTGAAAAAGGATACACTTTAGTTGCTTTCAGTAAGCCATTAATCTTTCTTCAATTTTTTGTGTTTGACATGGGGTAGGGGTTGGTTTGGATTGAACTTCTCTATTTTGGGGGAATGGAATTGGATGAATTGGTTGAAGTGCCCTAATGGTGAAATGTATCAAAGATAAAGCAGACGCGTTCCACATAAATCTCTGGTCTTACCCATTGGAAATTAAGTAGAATGACGACTATTTTAGCATGATCTGCTTCTTATCATCTACAGAGATGTTCCATTGTGAATGTGGTTAACAGAGACTCTAAACATTACAATTATTTAACGAATATGGTCAATTGTTTTAGGTTAAGATGTTGTTTATGATTAGTAGCTGATCTGTCTATTGCATTTCTTTTAGTTTTGAGATGTTATTGTGAATGCAAAATTTTCAGCTTTGATTAAAATGTATCTTCATTTTTATCATTGATTACTGAGATTTTCCTTTCCTGGAGATTGAACTGCTTTCTTTTGCTGGCTATCATGTCTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTTGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGGTATGCTTGTTTTCTTAACTGCCCCCTCCCTCTCTCAAGGATATGGGAATTATTCATAGAAAGAGAGTTTGCCAAAAATTTAAGGAAAAAAACGAGTCCTGCATTAGGGTTGTTTGTAACTCTGCACCAATCTTGGTGGTTATCTCGAATGTAGTTAAATAGTGTTCTTAAGAGAATAGTTGAAATGAGCATAAGCTAGTCAGGATAAAAAGTCTTGGTATTTAGGTCCATGCTGTAAAACAAACATGTACCATACTGGAGTCCATTTCATAAGCACTTAATGTACTACCATACAGAAGATAGTTTGAATACTCTAAGTTGATCTTATTTTCAAGTAAATCAGGTGAGTTTACAGAAGTCAACACTGGATTACAAGCGTACATTGCGTTTTTAAAGGAAATAAATACCTATTGCTCAAAAGTTTGAAGTTTCATACCTAAGGAATGAAAGAAAAGAAAATACCCCGTGTCCCTCAAGCTGGTTCATCGAGTCTATATTTCCATACTTGATATGTTAACTCCAGTATTTCTCGTTTATACTTCAATTCAAATTTCATATATTTGTCTATTTTCCTTTCCAGACATCCAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAACTATCAGTCATTTGCGTGCATCCTAAATGGGAACTCCTTATTCGTCATCTCTACCAAATTGACTGGAGCTGGAATACTGTCAAGTTCTCGACACCATTCATAGACTAGGCTTTATCCTTCAGTTGTTATGCATATGTTGTTCTATTACATAAACTAGTTAGTTGTTTCGATGTATTCCAGTCGTAACTGTAGTTTTTGACATTTTAATTGGCTGCACAAGTTGAATGCCTTCAGATTTTGAATGCAAGGCCAAGTAAACGAAACTTGAAATTGTGCATCTAAGCATAGAGAATCGAGCCTCGCTTGGTTTCTTATCTGTTTGAAAAGCTTGTTTTGTTGGATTCTTGAACTCGTTTATTTTTACAATTAGTTGAAGGACATTTGATGTATTTCTATTCGTTAACGAGTATCATGAATTGATCTCAAATGAGCTCTGAAACCGTTATCTTCATTTTATAACGGTTTCTTTGTCATATGTTTCAGGCACAATGACATGAAACTATTATCCTTTGTGTTTCTATA

mRNA sequence

AAAGAGAGTAGTATTGGGCCATCGGCGTTGGCATTTGGTTTTGGACTGCAATTCGATTTCGACGACTGTGGGGATCGGAAACTCATAAATCCCACTCTTCAGTTTGCGATTTCAGAGCTCCCAATACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTTGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGACATCCAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAACTATCAGTCATTTGCGTGCATCCTAAATGGGAACTCCTTATTCGTCATCTCTACCAAATTGACTGGAGCTGGAATACTGTCAAGTTCTCGACACCATTCATAGACTAGGCTTTATCCTTCAGTTGTTATGCATATGTTGTTCTATTACATAAACTAGTTAGTTGTTTCGATGTATTCCAGTCGTAACTGTAGTTTTTGACATTTTAATTGGCTGCACAAGTTGAATGCCTTCAGATTTTGAATGCAAGGCCAAGTAAACGAAACTTGAAATTGTGCATCTAAGCATAGAGAATCGAGCCTCGCTTGGTTTCTTATCTGTTTGAAAAGCTTGTTTTGTTGGATTCTTGAACTCGTTTATTTTTACAATTAGTTGAAGGACATTTGATGTATTTCTATTCGTTAACGAGTATCATGAATTGATCTCAAATGAGCTCTGAAACCGTTATCTTCATTTTATAACGGTTTCTTTGTCATATGTTTCAGGCACAATGACATGAAACTATTATCCTTTGTGTTTCTATA

Coding sequence (CDS)

ATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTTGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGACATCCAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

Homology

[Close]

BLAST of Lsi08G005530 vs. ExPASy Swiss-Prot
Match: Q9LMN4 (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Lsi08G005530 vs. ExPASy Swiss-Prot
Match: Q9C6K5 (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.0e-42
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Lsi08G005530 vs. ExPASy Swiss-Prot
Match: Q32PE9 (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Lsi08G005530 vs. ExPASy Swiss-Prot
Match: P62310 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Lsi08G005530 vs. ExPASy Swiss-Prot
Match: P62311 (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of Lsi08G005530 vs. ExPASy TrEMBL
Match: A0A6J1JZX1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC111489789 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Lsi08G005530 vs. ExPASy TrEMBL
Match: A0A6J1FGZ1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111445386 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Lsi08G005530 vs. ExPASy TrEMBL
Match: A0A6J1BV62 (U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC111006032 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Lsi08G005530 vs. ExPASy TrEMBL
Match: A0A5D3DHH3 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo var. makuwa OX=1194695 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.6e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Lsi08G005530 vs. ExPASy TrEMBL
Match: A0A0A0K8S0 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis sativus OX=3659 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.6e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Lsi08G005530 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_038886358.1 sm-like protein LSM3A [Benincasa hispida] >KAG6578889.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032866.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6602182.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Lsi08G005530 vs. NCBI nr
Match: XP_008441520.1 (PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LSM3A [Cucumis melo var. makuwa] >TYK22739.1 sm-like protein LSM3A [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]

BLAST of Lsi08G005530 vs. NCBI nr
Match: XP_016719620.1 (sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like protein LSM3A [Gossypium arboreum] >KAB2093840.1 hypothetical protein ES319_A02G119900v1 [Gossypium barbadense] >TYH28285.1 hypothetical protein ES288_A02G132100v1 [Gossypium darwinii] >TYI39998.1 hypothetical protein ES332_A02G133700v1 [Gossypium tomentosum] >TYJ46483.1 hypothetical protein E1A91_A02G124400v1 [Gossypium mustelinum] >KAG4211549.1 hypothetical protein ERO13_A02G112705v2 [Gossypium hirsutum])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Lsi08G005530 vs. NCBI nr
Match: XP_042459108.1 (sm-like protein LSM3A [Zingiber officinale] >XP_042464526.1 sm-like protein LSM3A isoform X4 [Zingiber officinale])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI+TTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEILTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Lsi08G005530 vs. NCBI nr
Match: KAG9455091.1 (hypothetical protein H6P81_007995 [Aristolochia fimbriata])

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
           MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI+TTVE
Sbjct: 843 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 902

Query: 61  IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
           IDDETYEEIVRTSRRT+PFLFVRGDGVILVSPPLRT
Sbjct: 903 IDDETYEEIVRTSRRTIPFLFVRGDGVILVSPPLRT 938

[Close]

BLAST of Lsi08G005530 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 173.3 bits (438), Expect = 9.4e-44
Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Lsi08G005530 vs. TAIR 10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-43
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]

BLAST of Lsi08G005530 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]

BLAST of Lsi08G005530 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 72

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 73  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 103

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BLAST of Lsi08G005530 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 72

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 73  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 103

The following BLAST results are available for this feature:

BLAST of Lsi08G005530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMN4	1.3e-42	86.46	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
Q9C6K5	5.0e-42	88.54	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
Q32PE9	3.1e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
P62310	3.1e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
P62311	3.1e-36	79.78	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of Lsi08G005530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZX1	1.1e-44	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FGZ1	1.1e-44	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1BV62	1.1e-44	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3DHH3	5.6e-44	98.97	U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0K8S0	5.6e-44	98.97	U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis sativus OX=3659 GN=LSM3 PE=3...	[more]

BLAST of Lsi08G005530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133461.1	2.3e-44	100.00	sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3...	[more]
XP_008441520.1	1.1e-43	98.97	PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LS...	[more]
XP_016719620.1	3.3e-43	97.92	sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like pr...	[more]
XP_042459108.1	3.3e-43	97.92	sm-like protein LSM3A [Zingiber officinale] >XP_042464526.1 sm-like protein LSM3...	[more]
KAG9455091.1	4.4e-43	96.88	hypothetical protein H6P81_007995 [Aristolochia fimbriata]	[more]

BLAST of Lsi08G005530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21190.1	9.4e-44	86.46	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	3.6e-43	88.54	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	4.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.2	4.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.3	4.1e-07	32.97	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 14..92 e-value: 1.1E-19 score: 81.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 16..92 e-value: 1.1E-18 score: 66.6
None	No IPR available	GENE3D	2.30.30.100		coord: 2..94 e-value: 8.4E-30 score: 104.4
None	No IPR available	PANTHER	PTHR13110:SF13	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..97
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..97
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..92 e-value: 2.31926E-51 score: 153.921
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 11..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G005530.1	Lsi08G005530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0033962	P-body assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding