Lsi08G005360 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAACCGGGCCATCATTAAGGGAAGGTTATGGTGGAGTTCCTCCCAATGTTTCTTCTAATGTAGGGCGGGCGAAATTTGGGTGGGAGAGTCCTCCTAAAAGGGTACGTACTTTGTCTTGTGATGATGGAAGGAGGATGTTCGTTAAGGGTAGTTTTGGATGGGTCTTGAGAGATCACAATGAGAATATTGTTTGCGTTGGGTGTAAGTCTGTGATTGGCGTCTATGATATTTCAATGCTAGAAATGTAGGTGATGAAGAGGGTTTGCAATTCAGATTTTTCCGGAGAAGATAGCAACTTAATGATTTTTTTTTTTTCTTTGGAAACTACATAATTTACAACTAGTTATAAGGGGGGTTAGAAAACTAAGTCTTGGCATTTTTTTATAAAAAAAAAAAATTAGCCTAAACATTAGGCTTTAAGTAACATATTTATAGTAGTAAAGTAACCTTTATTTATTTATTTATTATTTTTTTTTTAATGAGTTTTAGGATAAAAACCCCATAACTTCCGAAATTGGTAAGTAGATTAGAAAATATAATAGAGTTACTTATGTGGTAATCTAATTTGATGTAAAATTAGATTTTTTTTAAAATTTTTTTAATTTAATTTAATTTTTTGAGAAATTAAAAAATATCAAACTATTTACAAATATAGAAAATTTTTATTGTCTATCGCTTGATTGATAGAATTTTTAGTGATAGACCGTAAAATTTTTTTATATTTATAAATAGTTTGACTCATTTTTTTATATTTGAAAATAATTCTATTTTTTTTTTTTTTGGTTAGACGTGGAATTAGATAATTGATTCTGGCGTAATATCTACGGTGAGGTCTCGCGTATTAGATCCTAATTTGTCTGAGGAGTTTTGTTCTTCAGCTTCGAAACATTTACTCGGAAACAACAGATAGCTCTAAATTAATCGGCAGTTAGGGTTTTAGGAATCTCCAAATTCTTCGTGAAGGTCAATTCATTTGTCTCCGGTTTCCAAGATCCCGATTTCCCTCTGTCTTCTGAACCACTAATTTTGGAAAATTGCAGCATATATGGCGGATGATTATTGGAATCGGCAGCAGCCTCTGCTTCCCTCGCCAGGCATGCTTAAACGACCTCGTACTGAATATGGTAGGCCCGTCTATTTATTATGTTTAATTTGTTGGTACTTGAAGCCTCTTTTCTGAAATTTGGGTTCTTTTCTCGAATTCGGTTGCGCATAATGATTTTGCAGCTAGTTCGGCAGTAAATTTTGATGGGCTTAATTCCGTAACAATATCTGGAAAATTAATGAAAGCATTTTCGTTTTGTTTGGTTTGATTTGTTAAGTTAGTTGTGAATAATCAGTGTTCACAAAGTAATTGAATTCAGGTTTTTGCTGATAAAGTTGTAGTTGAAAATTCTGTATGAAGAATGTGCCGAAAATTCTGTATGAAGAATGTGCCCGAAATCATCTCTTCCCCAGCTTCTTGGTGGGTGTTATGTAGATCTTCGAAGTGTGTCTTTCACGGGGTACTAAAATAGTTTGATGGTCCAACGCACTTCATCGATAGATGAGACAAGACAATTTTCCTTTTTTTTGGTTCTGGTGGGGGATGTGCAAGCCAAGTTCTTAAAAAAGTAGTAGGTAGGGTAGGACTAAGAGGTCATGGGTTCAATCCATATTGGTCACCTATCTAGGATTTAATATCCTATGGTTTCTTTGACACCAAAATGTTGTAGGATCAAACGAGTTTAGTGTTTTAAAAAGCCCTCTCGGGCGCGTGCCTAGGCTCAAGGCGCAGATCTGGTGCCTCAGGTGCGTGCCTTTTGTGAAGCCCCAAGGCTCAAAGCCCTGGGACTTGGGGCTTTTTTATTATTTTTAAAAAATAGTAATAATTAAGGGTTTTCCTTTATTAACTAAAAAAATCAAGTTTACTTAAGCCTAAATGCAAAATTTCTTGTGTTTGGGGTCTTTTTTTTTTTTTTTTTTTCCATATTTCCACTTCAACTATGCTTTCTCTTTTTAATGTAATATTTTATATATAATGCGCCTCACAAAAAAAAAGCCGCGCCTTTTTGTGCGTCTTGCGCCTAGGCTCTAGAGGGCCATTGTGCCTTGGGCGTTTAAAAATACTAGGCGGGTTATCTCGTGAGATTAGTTGAGGTGTGCGTAAGCTGGTCTGGACACTCACAGATGTAAAAAGAGAAAAAAAGTAGTATAAAGGGTGTCATTAAAAGTTTTAATGTCCTCATGAACTGAAACTTGGGATAATGCCCTTGTTTTCACCTATAGTCAGTTTTGAAATTTTACTTCATATTTTTGAACCTTGTTGAAAATCCTTAGGGGATGAAAATAAACTTTATAAACCATTCATACAACTTTCACGATCTCAAGGAAGAAACCATGACAATGAATCTTAATGTGCCTGGGGTAGCTTGTCTTTGTCCTATATCTGTATGGTATGCCTATGCCATCATGGGAAAGTCCAAACTCTTCAACGTTTTGGTCCTTAGTAGTGGAGAAAATTCATATCACGCTGTTCACTAAATGGAAGGTTGCTCTATGTTGACATTCTGACAAAGAGAGTCATTATTTGCTTGACTTCCTATAATGTGAGAGAAGGCTTTCCAATCATCTCTCCAGTTTTGGAGGTGTTGAAGCGGCAGGGGGGGGGGGGTTAGTATTCAGTGGCTTTGGCCTAGCAAAGCGTCTGATCCCCTATATCAATTCATTGGTGGTACGCATTTTCGAGTGCAAGCCAAAATTCTTCAGTTATTTATTTTAACTGGCTCGCTTTTATGCTTCCTGCCTAATTGAGTCTTTTATTATTGTGTTTAGACTTTTATTGTTTTTATTGTCTTTTGTTACTTTTGTTTCCTTTACTTCTCTAATCTCTCCCTTGTTTTGTTCTATTGAGCATTAGTCTCTTTTCATTTCATCAACAAAAAGTTTTTTCCTTTGTTAAAAAAAAAAAGGTCCACCTTGCTAAATGGTCTTGGATTTCTGCTCATGGGAGCTCCCGTGAAGGTAGCTAAAGAAATTATCATCAGCAATCAATTATGCTAAGGAAAGTATACTAGAAGAAAATGAGGGGTTGGAGGTTGGGGGAATAGTGTAATGCTAATGTTATAAATGATAGGGAAGGACTATCCAAATACGGTGCGCTCATACAAGAATCTAAATCGAGGGTGGATACAAATGTAATAGAAACACTTCAGAGCTTGAGGGAGATTTGATGGACTGGGAAGTTGAATATTGGAGTGCTTTTGAGGGGCAGATTGCTTTATAGTATGAATGGAAGTAACGGATATGGAGAGGAAGAAACTCTGGAATAAAGTGGGAAATTTATTTGCTGCTATGATGGAAAGTGGTGTCTTGGGAGAGACTTTAATGTAGTGAGAATAGTAAAGAATCTTCAGCCAGAGCAGCAATTAAAAGCATGATGAATTTGGATAAGTTAGTTGATGAGATCAGAATGATCAAAATAGAATAATGTGCCTGGTTGAGTTTTAGAGATGTTCTTGTGCAGTCCCTTGTGGATTAGTTTTGTGTCTCCTAGGAATGCTTAACATAGTTTCATCCTATCAATGAAAGATTTGTGTTCTATTAAAAGAAAGGAACGGTTAACAAAATTTCAAGAGTTGAAGTCAATAAAGAAGGCGAGATCAAGGTTTTGATCCCTTTTAAATGTGTAGGGAACAGGGGAGCGTGATGGGACCATGGCCTTTTAGATTGGAGAACCTTGGGTGAAACATCAAGAGTTTTGGAGGAGATAGTGAGTTAACTGTGGAAATTGGGAAAATGATATTAGTAGCTGCACTTTGAAAGGGATTATAAACAAATGGGAATTGGATACATTTAAAAAATTTGGTAGCGGAGGGAGTTGAAAATCTAATCAGCAACATATATAAAGAAGGGAGAATGTTTAAAAAATTTGGTAACGGAAGGAGTTGAAAATCTAATCAGCAGCATAAAAGGGAGAATGGGTGCTTGGAGTGGAGAGCTAGAGAGACAAAAATCAATGCAATGGCAATTGCGTGGCATCATTCTCAAAAAGGTTTCTAGTTGCTTCCAAAAATTTAAATGGTTAAAAGAAGACGATGTTAGACTTTTGGTATATATATTTATACAATAATAATGTTTGTAGCGAAAGATTTGTCTTGTTTTTTTTTTTTGTTTTTTTGAATTACATTTGGTTGTTCTTACAATAAACTTTAGGTAAATATATTGGGTATAATTAATATTTTCATATATTGGGTAAATTAAGATTTTCATATTATGTATTCATATTGTGATCCCCTACCTTAATAATGTTTAGATACTTCCATGTGATCCACATTCGTTAACATATTATTGTTGGACATCTTACAATAATCTTGAAGTCTTTTTGAAGAATTTCACTTGGTTTCATAAACTAGAAGCTGAGGTTTTTTTGGGATTGAAACAAAATTTTCACTTTATTTACCTACGGTTCTGTTTAAGACTTTGATTTTCTATTTAATTTTGCTCTTATAGATGTTATCCGTCCATTGAACTTAAAGTAGTGTTATATAGTATTTGGATAGGGAGGATGAAGAGATTAGATACGTGGAATATGAAAGTATGAATGAACTGCTAAAACAATTAATTTAAATGGTATGAACTGCTAAAACAATTAATTTAAATGGTACGATAGGACTTTCTATACTCATTGAACTTTGTTGATTTAATTGAGTATTATTGAAGTAGTGTGTGTATTTTACTTTTAACAACTCTTTTATTCCTTCGCTAATAGGGCATCTGTTCTTTCATGTGTGGAATAAACTCTTTTTTTCTTTTTTTTTTTTCCTTCTTCTTTTGGTCTTGTTAGCTGTTTTCCTTATTGTAAATTGGAAATGGAATCATGTCCTGCTTTCACTCTCTGCAGAACATCCATCCTCTGGATTGTCTACCGGCCATGAGATGCACAATTATTTAGCAAGTGATGATTGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGGTATGACTGAGATCTAGATTTATTCTCTTTTCTTACCTCGCAGTTTGAGTGCTGAAAACATTTTGTAATTGCTTCTGAAGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCCACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGACCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTAGAAATATTGAGTATGGTAATCATCTTCCTGTAGATTCGATGAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTCGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCGTATCCTTTTTATAGGTGGTGATGCCACAAGATAA ATGAGAACCGGGCCATCATTAAGGGAAGGTTATGGTGGAGTTCCTCCCAATGTTTCTTCTAATGTAGGGCGGGCGAAATTTGGGTGGGAGAGTCCTCCTAAAAGGGTACGTACTTTGTCTTGTGATGATGGAAGGAGGATGTTCGTTAAGGGTAGTTTTGGATGGGTCTTGAGAGATCACAATGAGAATATTGTTTGCGTTGGGTCATATATGGCGGATGATTATTGGAATCGGCAGCAGCCTCTGCTTCCCTCGCCAGGCATGCTTAAACGACCTCGTACTGAATATGAACATCCATCCTCTGGATTGTCTACCGGCCATGAGATGCACAATTATTTAGCAAGTGATGATTGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCCACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGACCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTAGAAATATTGAGTATGGTAATCATCTTCCTGTAGATTCGATGAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTCGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCGTATCCTTTTTATAGGTGGTGATGCCACAAGATAA ATGAGAACCGGGCCATCATTAAGGGAAGGTTATGGTGGAGTTCCTCCCAATGTTTCTTCTAATGTAGGGCGGGCGAAATTTGGGTGGGAGAGTCCTCCTAAAAGGGTACGTACTTTGTCTTGTGATGATGGAAGGAGGATGTTCGTTAAGGGTAGTTTTGGATGGGTCTTGAGAGATCACAATGAGAATATTGTTTGCGTTGGGTCATATATGGCGGATGATTATTGGAATCGGCAGCAGCCTCTGCTTCCCTCGCCAGGCATGCTTAAACGACCTCGTACTGAATATGAACATCCATCCTCTGGATTGTCTACCGGCCATGAGATGCACAATTATTTAGCAAGTGATGATTGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCCACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGACCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTAGAAATATTGAGTATGGTAATCATCTTCCTGTAGATTCGATGAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTCGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCGTATCCTTTTTATAGGTGGTGATGCCACAAGATAA MRTGPSLREGYGGVPPNVSSNVGRAKFGWESPPKRVRTLSCDDGRRMFVKGSFGWVLRDHNENIVCVGSYMADDYWNRQQPLLPSPGMLKRPRTEYEHPSSGLSTGHEMHNYLASDDCGGPRSVKDTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVARILFIGGDATR Homology
BLAST of Lsi08G005360 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 6.3e-44 Identity = 97/186 (52.15%), Postives = 127/186 (68.28%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.3e-41 Identity = 97/184 (52.72%), Postives = 116/184 (63.04%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27 Identity = 84/199 (42.21%), Postives = 113/199 (56.78%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 2.3e-22 Identity = 81/184 (44.02%), Postives = 98/184 (53.26%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 7.6e-05 Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy TrEMBL
Match: A0A1S3B4F0 (RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 1.3e-92 Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy TrEMBL
Match: A0A6J1CKA2 (RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 1.5e-88 Identity = 162/183 (88.52%), Postives = 170/183 (92.90%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy TrEMBL
Match: A0A6J1JXN9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489771 PE=4 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 5.9e-85 Identity = 158/183 (86.34%), Postives = 168/183 (91.80%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy TrEMBL
Match: A0A6J1E3U2 (RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430572 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 5.5e-83 Identity = 154/183 (84.15%), Postives = 164/183 (89.62%), Query Frame = 0
BLAST of Lsi08G005360 vs. ExPASy TrEMBL
Match: A0A6J1FDW9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444852 PE=4 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 9.4e-83 Identity = 155/183 (84.70%), Postives = 165/183 (90.16%), Query Frame = 0
BLAST of Lsi08G005360 vs. NCBI nr
Match: XP_038884975.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida]) HSP 1 Score: 353.2 bits (905), Expect = 1.9e-93 Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0
BLAST of Lsi08G005360 vs. NCBI nr
Match: XP_038884977.1 (RNA-binding protein 2-like isoform X3 [Benincasa hispida]) HSP 1 Score: 353.2 bits (905), Expect = 1.9e-93 Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0
BLAST of Lsi08G005360 vs. NCBI nr
Match: XP_038884978.1 (RNA-binding protein 2-like isoform X4 [Benincasa hispida]) HSP 1 Score: 353.2 bits (905), Expect = 1.9e-93 Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0
BLAST of Lsi08G005360 vs. NCBI nr
Match: XP_008441534.1 (PREDICTED: RNA-binding protein 2 [Cucumis melo] >XP_008441535.1 PREDICTED: RNA-binding protein 2 [Cucumis melo]) HSP 1 Score: 349.4 bits (895), Expect = 2.7e-92 Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 0
BLAST of Lsi08G005360 vs. NCBI nr
Match: XP_031743537.1 (RNA-binding protein 2 isoform X3 [Cucumis sativus]) HSP 1 Score: 347.1 bits (889), Expect = 1.3e-91 Identity = 168/183 (91.80%), Postives = 174/183 (95.08%), Query Frame = 0
BLAST of Lsi08G005360 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding ) HSP 1 Score: 141.0 bits (354), Expect = 1.4e-33 Identity = 87/190 (45.79%), Postives = 121/190 (63.68%), Query Frame = 0
BLAST of Lsi08G005360 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding ) HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28 Identity = 84/199 (42.21%), Postives = 113/199 (56.78%), Query Frame = 0
BLAST of Lsi08G005360 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 107.5 bits (267), Expect = 1.7e-23 Identity = 81/184 (44.02%), Postives = 98/184 (53.26%), Query Frame = 0
BLAST of Lsi08G005360 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06 Identity = 34/74 (45.95%), Postives = 40/74 (54.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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