Lsi08G005100 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G005100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein SKP2A-like
Location	chr08: 13020976 .. 13024913 (+)
RNA-Seq Expression	Lsi08G005100
Synteny	Lsi08G005100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGTAAAGAAAACTTGAGGACTGAAGACTTGAACTTGTGCTTTGAGAAACTAATGATGCTTGTTGGTGGTGGTGATGGAATGGATGTTGGTGCTAAAGGAGTTAAAATGGATGGTGGGGTGATAGCAGGATGGAAGGACATTCCTATGGAGCTTCTCTTGCAAATTGTATCGCTTGTTGATGATCGAACTGTTATTGTAGCCTCAGGCGTGTGTCGTGGATGGAGAGATGCTATTTGCTTTGGCCTCATCCATCTTTCCCTCTCATGGTACTTCCTCTGACTTGCTTTGGATGCCTTGCTTTTTATTGATCATTTAGGCCTCATTTGATAACTCTTTGGTTTGATTATTTCATTTGAAGATATTGCTTGTTTTCTCACAATCTCCTACCATTGCTTTGTCTTTCTTAGGTAGAAAACATTTTAATTCTTAGGCTCTTAGCCAAATATCAAAACTAAACACAAGTTTTTAAAAACTATTCTCTTAGCTTGGATTTTGGAAACGTTTGTGAAAAGTAGAGAATATAACAAAGGAATTTGCAGGGGCCTTAACCTTTGACGTGAGTATAATCTTACTGAATTGTGTTGTTGTTATTAGTGGGTTCAGAGAGAGAATTTCAAGCATTTGTAGTTTCGTCCAGGTTTCTCAGTTGTTGGGCGTCTGGTTTATATTGATTTTCTCCTCCTGTTATTGCTTCATATGATATGATAAATTGGACTCCTCTCTTCTGGTTTTGTTTGTACTTTATTTTTTCGCGCTTTTATACTTATTTCCTCAAGTAATCAAAAAAATTTACGAAGGTTTGGTTGAATGGGAAGGGAGATAGTTGATGTGTTGATTCATATCTTCCTCTCCTCTCGTTATTTTATCTTTGATCATTGGTCTTTTTCAATTTTTCAATGAAAAGTTTTGTTTCCTTTTATGCCTTCGGTTTTACCTGTTTAAAAATAAATCACTGTTATTATTGCAAACGGAAAAACTTGGGTTTTGATATTGTCCCCAATCATAAATTTTGCCCAAAATATTATGTAAACCCCGTTCGTGTATTATTGCATCTTAGTCCCTCTAAACTTTATAGGATAAATCAGCAAGTATTTATAAAAAATCTTCTCTTGAAAATTCCTAGTTGTATCTCAGATTGAGATGATCCTGTTTCTCTGCTACCTTTTTGAGGTGTTAAATGAGCAGTAGAGCATTGATTATTACTTAAGTCATAAAACCAAATTTCTTTTCCAACTACTTTTTTGTATAATATCATTGCAAGGCTCTTCATTAAGAGAAGATTGTTAACTTTTCATAATTATCAAATACTAATTTTAAGTTCTCTCATTGCTATGTGATAATTCTGTTTTTGGAGGTTAACTTATAAATCATAAACATATCAGGAATGGTGCAAGCTTGATTTTTCTAGCTACAAACTTATGACTGTTATTTTGTAAGTATAGCTTCAACATTTACTTTTAGATATCTATTTAATGAGTAGCCTGCTGCTTGTACCAAAAAAAATAAAAACATTTACTTTTAGACATTTATACGTCTAATGAATGACATCTATTTTGATGTTATTGTAGGCCACACCACATTAAGCTCTTGCACCCTTGACTGGTATCATGCTAACTCAAGCACATCATTATTATTATGTACATTTAAACGATCAGCTAGAACTTGATTGAGTATTTTAATAGTGAATTTGTTTTATCAAGATATATGCTTGGCAAGGAAAGTTGTTCTGTAGCCTCTGTTTTGATCGAAATGGAGTGTAAAGATATACCGATGGGACATTTTTCATGACATAAAAATGAATAGACACCTTAGTTAATTGCTAGTTGGTGTCCCCTTTTTATTCAGGTGCAAAAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAGACTGCAAACTCTAATCTTGCGCCAGGATAAACCCCAGCTTGCAGACGATGCTGTTGAGACGATTGCTAGTAATTGTCGTGATTTGCAGGTCCTGGACCTGAGCAAAAGTTTCAAGCTTAGTGATCTTTCCCTATATGCTCTGGCTCATGGTTGTCGCGATCTTAAAAAACTGAATATTAGTGGTTGTACTGCATTCAGTGACACTGCACTGGCTTATCTGGCCAGTTATTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGATGTGTCAAGGCTGCATCTGACACTGCATTGCAGGTAAAAACTACAGATTAAGCAATTTATAGCTTGTTTGAAGTTGATTAATGTACTCATATTTCGCCTATGTGCAGGCTATTGGACAATACTGTAATCATTTGCAATCTGTAAATCTTGGATGGTGTGAAAATGTGAGTGATGTGGGTGTGATGAGTTTGGCATATGGATGTCCCGATCTTCGAACCCTAGACTTGTGTGGTTGTGTCCTAATTACAGGTACATCTCTTAACTCAAATCAACAAATTCGTATTTAGGAACTAAAAGATCATTGATGCTTCTTATTTGGTAGAATGTAGCTGTCTGATTCATGATATTTTTCTGCCGGCACTATTTATGAACTTTTAAGCTTTAGTATAGTACAGATATGAACTAGTCAAATCACCCCTTGTTCATGGTCCTCCAGAAAGGAGTATTATTGTTAATTTCAAATATCCTTCACTCACTTCCTATCCTTCCATCTCTAGTTGCTATGAAATCTATGGTCCTTGTTTTACACCAACAATGGTGATAATTGCCAAGCAAAGCCCTTTACTCCATGAAGTTGATGGATTGAAAGAAACTCAATGTTACCACTTCTGTATTTGATGAAGGGGTAAATAAGATTCTGTGTCAGTTGCACCCTTAGGCTATCCTTGGATAGAATCTCGTTTAAGAATCAAAATCAAAATCCTTTAACCTCCTCTTTTAAGAGAAATGCCCTGTTTCCAGGGAGATGCCTTTTTTCAGAGCAGAGATACTCTTGTCTTTAGATATGGAAAAAGATCCTTTAAACTATGGGAAGTCCCTCAGGTCAAAACTTCTATCTTTTGAGAGTTTCCTCGTCCACGGTGAGAGGAAGTGAAAGGTATTTTATAGTAAGATCTGTTTGTGGGGTAAGAAGAGCCGTTTCGATTCTCATCAGAAAATTCTTTTGAGTGTACATTTGCGCGGGTGTTTTCTTCTTCTCTCAAATTTTTGTTGAACTTTCTTATGGCTGATGAAAGATGGTTCTATATTTTTGGAAGAATGGTTAGTTATAATAGTGTAGCTGAATGGTTTTGATCCTTTTGCCTAATCTGCAGATGATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTATTGTCAAAATATAACAGACAGAGCAATGTATTCTTTAGCACATAGCTGTATAAAGAACAAACCCACAAAATGGGGAACAGGGAAAGGCAAGAATGACGACGATGGACTTCGAACTCTTAACATAAGCCAATGCACAGCTCTTACTCCCCCCGCCGTTCAGGCAGTTTGCGATTCATTTCCTGCTCTCCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGTACTCTGACTGCTTTTCCTCATTCAGCTCATTGAACACGAGAGTGAGTTTAGATTATTGTTATTCTCGGACACGATCCTTCTCCGGAAAATCATGATATGGTTGTATATGTACATGTTGCTTGGAAGAACGGGAATCTGAACATATGAGGACTTTGTTCTCTCGGTCGGTTTTTCCCTTTCTTTTTCATGTGTAAATATGTAGCTTACGGACATGAAGATGCCAAGCCTATATTTGTTTGGAACACATGCTTGGTTACTTTTGGAAATGCCTTCAATTTCATAAGACTTTTGGATTAAAAAAAATCTGCAAACAGAGCACAACTATTTACACCCTGAGCG

mRNA sequence

ATGGTTGGTAAAGAAAACTTGAGGACTGAAGACTTGAACTTGTGCTTTGAGAAACTAATGATGCTTGTTGGTGGTGGTGATGGAATGGATGTTGGTGCTAAAGGAGTTAAAATGGATGGTGGGGTGATAGCAGGATGGAAGGACATTCCTATGGAGCTTCTCTTGCAAATTGTATCGCTTGTTGATGATCGAACTGTTATTGTAGCCTCAGGCGAATGGTGCAAGCTTGATTTTTCTAGCTACAAACTTATGACTGTTATTTTGTGCAAAAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAGACTGCAAACTCTAATCTTGCGCCAGGATAAACCCCAGCTTGCAGACGATGCTGTTGAGACGATTGCTAGTAATTGTCGTGATTTGCAGGTCCTGGACCTGAGCAAAAGTTTCAAGCTTAGTGATCTTTCCCTATATGCTCTGGCTCATGGTTGTCGCGATCTTAAAAAACTGAATATTAGTGGTTGTACTGCATTCAGTGACACTGCACTGGCTTATCTGGCCAGTTATTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGATGTGTCAAGGCTGCATCTGACACTGCATTGCAGGCTATTGGACAATACTGTAATCATTTGCAATCTGTAAATCTTGGATGGTGTGAAAATGTGAGTGATGTGGGTGTGATGAGTTTGGCATATGGATGTCCCGATCTTCGAACCCTAGACTTGTGTGGTTGTGTCCTAATTACAGGTACATCTCTTAACTCAAATCAACAAATTCATGATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTATTGTCAAAATATAACAGACAGAGCAATGTATTCTTTAGCACATAGCTGTATAAAGAACAAACCCACAAAATGGGGAACAGGGAAAGGCAAGAATGACGACGATGGACTTCGAACTCTTAACATAAGCCAATGCACAGCTCTTACTCCCCCCGCCGTTCAGGCAGTTTGCGATTCATTTCCTGCTCTCCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGTACTCTGACTGCTTTTCCTCATTCAGCTCATTGAACACGAGAGTGAGTTTAGATTATTGTTATTCTCGGACACGATCCTTCTCCGGAAAATCATGATATGGTTGTATATGTACATGTTGCTTGGAAGAACGGGAATCTGAACATATGAGGACTTTGTTCTCTCGGTCGGTTTTTCCCTTTCTTTTTCATGTGTAAATATGTAGCTTACGGACATGAAGATGCCAAGCCTATATTTGTTTGGAACACATGCTTGGTTACTTTTGGAAATGCCTTCAATTTCATAAGACTTTTGGATTAAAAAAAATCTGCAAACAGAGCACAACTATTTACACCCTGAGCG

Coding sequence (CDS)

ATGGTTGGTAAAGAAAACTTGAGGACTGAAGACTTGAACTTGTGCTTTGAGAAACTAATGATGCTTGTTGGTGGTGGTGATGGAATGGATGTTGGTGCTAAAGGAGTTAAAATGGATGGTGGGGTGATAGCAGGATGGAAGGACATTCCTATGGAGCTTCTCTTGCAAATTGTATCGCTTGTTGATGATCGAACTGTTATTGTAGCCTCAGGCGAATGGTGCAAGCTTGATTTTTCTAGCTACAAACTTATGACTGTTATTTTGTGCAAAAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAGACTGCAAACTCTAATCTTGCGCCAGGATAAACCCCAGCTTGCAGACGATGCTGTTGAGACGATTGCTAGTAATTGTCGTGATTTGCAGGTCCTGGACCTGAGCAAAAGTTTCAAGCTTAGTGATCTTTCCCTATATGCTCTGGCTCATGGTTGTCGCGATCTTAAAAAACTGAATATTAGTGGTTGTACTGCATTCAGTGACACTGCACTGGCTTATCTGGCCAGTTATTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGATGTGTCAAGGCTGCATCTGACACTGCATTGCAGGCTATTGGACAATACTGTAATCATTTGCAATCTGTAAATCTTGGATGGTGTGAAAATGTGAGTGATGTGGGTGTGATGAGTTTGGCATATGGATGTCCCGATCTTCGAACCCTAGACTTGTGTGGTTGTGTCCTAATTACAGGTACATCTCTTAACTCAAATCAACAAATTCATGATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTATTGTCAAAATATAACAGACAGAGCAATGTATTCTTTAGCACATAGCTGTATAAAGAACAAACCCACAAAATGGGGAACAGGGAAAGGCAAGAATGACGACGATGGACTTCGAACTCTTAACATAAGCCAATGCACAGCTCTTACTCCCCCCGCCGTTCAGGCAGTTTGCGATTCATTTCCTGCTCTCCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGTACTCTGACTGCTTTTCCTCATTCAGCTCATTGA

Protein sequence

MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSLVDDRTVIVASGEWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKPQLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTLTAFPHSAH

Homology

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BLAST of Lsi08G005100 vs. ExPASy Swiss-Prot
Match: Q9LPL4 (F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 4.3e-137
Identity = 253/372 (68.01%), Postives = 294/372 (79.03%), Query Frame = 0


Query: 21  MLVGGGDGMDVGA--KGVKMDGGVIAGWKDIPMELLLQIVSLVDDRTVIVASG---EWCK 80
           M++GG   M++    + +KM+G  I  WKDIP+ELL++I+SLVDDR VIVASG    W  
Sbjct: 1   MVMGGEASMELDQCFQKMKMEGISIKEWKDIPVELLMRILSLVDDRNVIVASGVCTGW-- 60

Query: 81  LDFSSYKLMTVIL--CKKNMNNLVLSLVPKFARLQTLILRQDKPQLADDAVETIASNCRD 140
            D  S+ L  + L  C  NMN+LVLSLVPKF +LQTL LRQDKPQL D+AVE IA++C +
Sbjct: 61  RDAISFGLTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHE 120

Query: 141 LQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLASYCRKLKVLNLCG 200
           LQ LDLSKS K++D SLYALAHGC DL KLN+SGCT+FSDTA+AYL  +CRKLKVLNLCG
Sbjct: 121 LQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCG 180

Query: 201 CVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITGT 260
           CVKA +D AL+AIG  CN +QS+NLGWCEN+SD GVMSLAYGCPDLRTLDLCGCVLIT  
Sbjct: 181 CVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLIT-- 240

Query: 261 SLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKW-GTGKGK 320
                    +SV+ALA+ C HLRSLGLYYC+NITDRAMYSLA S +KNKP  W    KGK
Sbjct: 241 --------DESVVALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVKKGK 300

Query: 321 NDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQA 380
            D++GLR+LNISQCTALTP AVQAVCDSFPALHTCSGRHSL+MSGCLNL +VHCAC +QA
Sbjct: 301 YDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQA 360

Query: 381 HRTLTAFPHSAH 385
           HR   A PH AH
Sbjct: 361 HRAHNAVPHPAH 360

[Close]

BLAST of Lsi08G005100 vs. ExPASy Swiss-Prot
Match: O49286 (F-box protein SKP2B OS=Arabidopsis thaliana OX=3702 GN=SKP2B PE=1 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 9.6e-137
Identity = 247/384 (64.32%), Postives = 293/384 (76.30%), Query Frame = 0


Query: 5   ENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSLVDDR 64
           E    ++LNLCFE +                 KM+G +I+ WKDIP+ELL++I++LVDDR
Sbjct: 4   EGATRKELNLCFENM-----------------KMEGVLISEWKDIPVELLMKILNLVDDR 63

Query: 65  TVIVAS---GEWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKPQLAD 124
           TVI+AS     W          +++  CKKNMN+LVLSL PKF +LQTL+LRQDKPQL D
Sbjct: 64  TVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLED 123

Query: 125 DAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLAS 184
           +AVE IA++C +LQ LDLSKS K++D SLY+LA GC +L KLN+SGCT+FSDTALA+L  
Sbjct: 124 NAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTR 183

Query: 185 YCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRT 244
           +CRKLK+LNLCGCV+A SD  LQAIG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLRT
Sbjct: 184 FCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRT 243

Query: 245 LDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKN 304
           LDLC CVLIT           +SV+ALAN C HLRSLGLYYC+NITDRAMYSLA S +KN
Sbjct: 244 LDLCSCVLIT----------DESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKN 303

Query: 305 KPTKW-GTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLN 364
           K   W    KGK D++GLR+LNISQCT LTP AVQAVCD+FPALHTCSGRHSL+MSGCLN
Sbjct: 304 KHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLN 360

Query: 365 LMSVHCACAVQAHRTLTAFPHSAH 385
           L SVHCAC +QAHRT T +PH AH
Sbjct: 364 LQSVHCACILQAHRTHTVYPHPAH 360

[Close]

BLAST of Lsi08G005100 vs. ExPASy Swiss-Prot
Match: A6H779 (F-box/LRR-repeat protein 2 OS=Bos taurus OX=9913 GN=FBXL2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.4e-24
Identity = 79/265 (29.81%), Postives = 122/265 (46.04%), Query Frame = 0


Query: 124 VETIASNCRD-LQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLASY 183
           VE I+  C   L+ L L     + D SL   A  CR+++ LN++GCT  +D+    L+ +
Sbjct: 69  VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 128

Query: 184 CRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRTL 243
           C KLK L+L  CV + ++++L+ I + C HL+ +NL WC+ ++  GV +L  GC  LR L
Sbjct: 129 CSKLKHLDLTSCV-SITNSSLKGISEGCRHLEYLNLSWCDQITKDGVEALVRGCRGLRAL 188

Query: 244 DLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNK 303
            L GC  +   +L   Q          N C  L SL L  C  +TD  +  L   C +  
Sbjct: 189 LLRGCTQLEDEALKHIQ----------NYCHELVSLNLQSCSRVTDDGVVQLCRGCPR-- 248

Query: 304 PTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPAL---------HTCSGRHSL 363
                          L+ L +S C +LT  ++ A+  + P L         H      +L
Sbjct: 249 ---------------LQALCLSGCGSLTDASLTALALNCPRLQILEAARCSHLTDAGFTL 305

Query: 364 IMSGCLNLMSVHC-ACAVQAHRTLT 378
           +   C +L  +    C +   RTLT
Sbjct: 309 LARNCHDLEKMDLEECILITDRTLT 305

[Close]

BLAST of Lsi08G005100 vs. ExPASy Swiss-Prot
Match: Q58DG6 (F-box/LRR-repeat protein 20 OS=Bos taurus OX=9913 GN=FBXL20 PE=2 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-22
Identity = 98/356 (27.53%), Postives = 160/356 (44.94%), Query Frame = 0


Query: 47  KDIPMELLLQIVSLVDDRTV---IVASGEW--CKLDFSSYKLMTVILCKKNMNNLVLSLV 106
           K +P ELLL+I S +D  T+      S  W    LD S+++ + +   ++++   V+  +
Sbjct: 26  KKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENI 85

Query: 107 PKFAR--LQTLILRQDKPQLADDAVETIASNCRDLQV----------------------- 166
            K     L+ L LR     + D+A+ T A NCR+++V                       
Sbjct: 86  SKRCGGFLRKLSLR-GCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSK 145

Query: 167 ---LDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLASYCRKLKVLNLCG 226
              LDL+    ++++SL AL+ GC  L++LNIS C   +   +  L   C  LK L L G
Sbjct: 146 LRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKG 205

Query: 227 CVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITGT 286
           C +   D AL+ IG +C  L ++NL  C  ++D G++++  GC  L++L   GC  IT  
Sbjct: 206 CTQ-LEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDA 265

Query: 287 SLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKN 346
            LN          AL   CP LR L +  C  +TD    +LA +C +             
Sbjct: 266 ILN----------ALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE------------- 325

Query: 347 DDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS--GCLNLMSVHCA 368
               L  +++ +C  +T   +  +    P L   S  H  +++  G  +L +  CA
Sbjct: 326 ----LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACA 352

[Close]

BLAST of Lsi08G005100 vs. ExPASy Swiss-Prot
Match: Q96IG2 (F-box/LRR-repeat protein 20 OS=Homo sapiens OX=9606 GN=FBXL20 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-22
Identity = 98/356 (27.53%), Postives = 160/356 (44.94%), Query Frame = 0


Query: 47  KDIPMELLLQIVSLVDDRTV---IVASGEW--CKLDFSSYKLMTVILCKKNMNNLVLSLV 106
           K +P ELLL+I S +D  T+      S  W    LD S+++ + +   ++++   V+  +
Sbjct: 26  KKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENI 85

Query: 107 PKFAR--LQTLILRQDKPQLADDAVETIASNCRDLQV----------------------- 166
            K     L+ L LR     + D+A+ T A NCR+++V                       
Sbjct: 86  SKRCGGFLRKLSLR-GCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSK 145

Query: 167 ---LDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLASYCRKLKVLNLCG 226
              LDL+    ++++SL AL+ GC  L++LNIS C   +   +  L   C  LK L L G
Sbjct: 146 LRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKG 205

Query: 227 CVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITGT 286
           C +   D AL+ IG +C  L ++NL  C  ++D G++++  GC  L++L   GC  IT  
Sbjct: 206 CTQ-LEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDA 265

Query: 287 SLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKN 346
            LN          AL   CP LR L +  C  +TD    +LA +C +             
Sbjct: 266 ILN----------ALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE------------- 325

Query: 347 DDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS--GCLNLMSVHCA 368
               L  +++ +C  +T   +  +    P L   S  H  +++  G  +L +  CA
Sbjct: 326 ----LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACA 352

[Close]

BLAST of Lsi08G005100 vs. ExPASy TrEMBL
Match: A0A1S3B3Q3 (F-box protein SKP2A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485661 PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 2.7e-190
Identity = 344/388 (88.66%), Postives = 353/388 (90.98%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEKLMMLV GGDGMDVGA+GVKMDGGVIAGWKDIPMELLLQIVSL
Sbjct: 1   MVGKENLRTEDLNLCFEKLMMLV-GGDGMDVGARGVKMDGGVIAGWKDIPMELLLQIVSL 60

Query: 61  VDDRTVIVASGEWCK--LDFSSYKLMTVIL--CKKNMNNLVLSLVPKFARLQTLILRQDK 120
           VDDRTVIVASG  C+   D   + L+ + L  CKKNMNNLVLSL PKF +LQ LILRQDK
Sbjct: 61  VDDRTVIVASGV-CRGWRDAICFGLIHLSLSWCKKNMNNLVLSLAPKFGKLQNLILRQDK 120

Query: 121 PQLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTAL 180
           PQL+D AVETIAS C DLQVLDLSKSFKLSDLSLYALAHGC DLK+LNISGCTAFSDTAL
Sbjct: 121 PQLSDHAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCHDLKRLNISGCTAFSDTAL 180

Query: 181 AYLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGC 240
           AYLASYCRKLK LNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENV+DVGVMSLAYGC
Sbjct: 181 AYLASYCRKLKFLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGC 240

Query: 241 PDLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300
           PDLRTLDLCGCVLIT           DSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH
Sbjct: 241 PDLRTLDLCGCVLIT----------DDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300

Query: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360
           SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS
Sbjct: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360

Query: 361 GCLNLMSVHCACAVQAHRTLTAFPHSAH 385
           GCLNLMSVHCACAVQAHR  TAFPHSAH
Sbjct: 361 GCLNLMSVHCACAVQAHRASTAFPHSAH 376

[Close]

BLAST of Lsi08G005100 vs. ExPASy TrEMBL
Match: A0A0A0KFD6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G344280 PE=4 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 3.3e-188
Identity = 338/387 (87.34%), Postives = 348/387 (89.92%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEK MMLV  GDGMDVGAKGV+MDGGV+AGWKDIPMELLLQI+SL
Sbjct: 1   MVGKENLRTEDLNLCFEKPMMLV-AGDGMDVGAKGVQMDGGVLAGWKDIPMELLLQILSL 60

Query: 61  VDDRTVIVASG---EWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKP 120
           VDDRTVIVASG    W          +++  C+KNMNNLVLSL PKFARLQ LILRQDKP
Sbjct: 61  VDDRTVIVASGVCRGWRDAICFGLAHLSLSWCQKNMNNLVLSLAPKFARLQNLILRQDKP 120

Query: 121 QLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALA 180
           QL DDAVETIAS C DLQVLDLSKSFKLSDLSLYALAHGCRDLK+LNISGCTAFSDTALA
Sbjct: 121 QLGDDAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCRDLKRLNISGCTAFSDTALA 180

Query: 181 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCP 240
           YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENV+DVGVMSLAYGCP
Sbjct: 181 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCP 240

Query: 241 DLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS 300
           DLR LDLCGCVLIT           DSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS
Sbjct: 241 DLRILDLCGCVLIT----------DDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS 300

Query: 301 CIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG 360
           CIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG
Sbjct: 301 CIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG 360

Query: 361 CLNLMSVHCACAVQAHRTLTAFPHSAH 385
           CLNL+SVHCACAVQAHR  TAF HSAH
Sbjct: 361 CLNLISVHCACAVQAHRAATAFLHSAH 376

[Close]

BLAST of Lsi08G005100 vs. ExPASy TrEMBL
Match: A0A5D3DJV0 (F-box protein SKP2A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001030 PE=4 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.2e-185
Identity = 337/384 (87.76%), Postives = 346/384 (90.10%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEKLMMLV GGDGMDVGA+GVKMDGGVIAGWKDIPMELLLQIVSL
Sbjct: 1   MVGKENLRTEDLNLCFEKLMMLV-GGDGMDVGARGVKMDGGVIAGWKDIPMELLLQIVSL 60

Query: 61  VDDRTVIVASGEWCK--LDFSSYKLMTVIL--CKKNMNNLVLSLVPKFARLQTLILRQDK 120
           VDDRTVIVASG  C+   D   + L+ + L  CKKNMNNLVLSL PKF +LQ LILRQDK
Sbjct: 61  VDDRTVIVASGV-CRGWRDAICFGLIHLSLSWCKKNMNNLVLSLAPKFGKLQNLILRQDK 120

Query: 121 PQLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTAL 180
           PQL+D AVETIAS C DLQVLDLSKSFKLSDLSLYALAHGC DLK+LNISGCTAFSDTAL
Sbjct: 121 PQLSDHAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCHDLKRLNISGCTAFSDTAL 180

Query: 181 AYLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGC 240
           AYLASYCRKLK LNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENV+DVGVMSLAYGC
Sbjct: 181 AYLASYCRKLKFLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGC 240

Query: 241 PDLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300
           PDLRTLDLCGCVLIT           DSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH
Sbjct: 241 PDLRTLDLCGCVLIT----------DDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300

Query: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360
           SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS
Sbjct: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360

Query: 361 GCLNLMSVHCACAVQAHRTLTAFP 381
           GCLNLMSVHCACAVQAHR     P
Sbjct: 361 GCLNLMSVHCACAVQAHRLELTLP 372

[Close]

BLAST of Lsi08G005100 vs. ExPASy TrEMBL
Match: A0A6J1CIQ6 (F-box protein SKP2A-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011854 PE=4 SV=1)

HSP 1 Score: 658.3 bits (1697), Expect = 2.0e-185
Identity = 332/386 (86.01%), Postives = 342/386 (88.60%), Query Frame = 0


Query: 2   VGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSLV 61
           +GKE LR EDLNLCFEKLMM+ GGGDG+DVGAKGVKM+GGV+AGWKDIPMELLLQIVSLV
Sbjct: 4   IGKEILRNEDLNLCFEKLMMVAGGGDGIDVGAKGVKMEGGVVAGWKDIPMELLLQIVSLV 63

Query: 62  DDRTVIVASG---EWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKPQ 121
           DDRTVIVASG    W          ++   CKKNMNNLVLSL PKF +LQTLILRQDKPQ
Sbjct: 64  DDRTVIVASGVCRGWRDAICLGLIHLSFSWCKKNMNNLVLSLAPKFGKLQTLILRQDKPQ 123

Query: 122 LADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAY 181
           LADDAVETIAS C DLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGC+AFSDTALAY
Sbjct: 124 LADDAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCSAFSDTALAY 183

Query: 182 LASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPD 241
           LASYCRKLKVLNLCGCVKAASDTALQAIG YCN LQSVNLGWCENVSDVGVMSLAYGCPD
Sbjct: 184 LASYCRKLKVLNLCGCVKAASDTALQAIGHYCNLLQSVNLGWCENVSDVGVMSLAYGCPD 243

Query: 242 LRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSC 301
           LR LDLCGCVLIT           DSVIAL+NMCPHLRSLGLYYCQNITDRAMYSLAHSC
Sbjct: 244 LRILDLCGCVLIT----------DDSVIALSNMCPHLRSLGLYYCQNITDRAMYSLAHSC 303

Query: 302 IKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGC 361
           IKNKPTKWG GKG NDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGC
Sbjct: 304 IKNKPTKWGPGKGMNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGC 363

Query: 362 LNLMSVHCACAVQAHRTLTAFPHSAH 385
           LNLMSVHCACAVQAHR  TAF H AH
Sbjct: 364 LNLMSVHCACAVQAHRAPTAFAHPAH 379

[Close]

BLAST of Lsi08G005100 vs. ExPASy TrEMBL
Match: A0A6J1FF47 (F-box protein SKP2A-like OS=Cucurbita moschata OX=3662 GN=LOC111444899 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 2.6e-185
Identity = 339/389 (87.15%), Postives = 350/389 (89.97%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLV-GGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVS 60
           MVGKENLRTEDLNLCFEKLMMLV GGGDG+DVGAKGVKMDGGVIAGWKDIPMELLLQI+S
Sbjct: 1   MVGKENLRTEDLNLCFEKLMMLVDGGGDGIDVGAKGVKMDGGVIAGWKDIPMELLLQIIS 60

Query: 61  LVDDRTVIVASGEWCK-LDFSSYKL--MTVILCKKNMNNLVLSLVPKFARLQTLILRQDK 120
           LVDDRTVIVASG  C   D   + L  +++  CKKNMNNLVLSL PKFA+LQTLILRQDK
Sbjct: 61  LVDDRTVIVASGVCCGWRDAICFGLTHLSLSWCKKNMNNLVLSLAPKFAKLQTLILRQDK 120

Query: 121 PQLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTAL 180
           PQLADDAVETIAS C DLQVLDL KS KLSDLSLYALAHGC DL KLNISGCTAFSDTAL
Sbjct: 121 PQLADDAVETIASYCHDLQVLDLRKSSKLSDLSLYALAHGCPDLVKLNISGCTAFSDTAL 180

Query: 181 AYLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGC 240
           AYLASYCRKLKVLNLC CVKAASDTALQAIGQYCN LQSVNLGWCENVSDVGVMSLAYGC
Sbjct: 181 AYLASYCRKLKVLNLCSCVKAASDTALQAIGQYCNSLQSVNLGWCENVSDVGVMSLAYGC 240

Query: 241 PDLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300
            DLRTLDLCGCVLIT           DSVIA+ANMCPHLRSLGLYYCQNITDRAMYSLAH
Sbjct: 241 RDLRTLDLCGCVLIT----------DDSVIAMANMCPHLRSLGLYYCQNITDRAMYSLAH 300

Query: 301 SCIKNKPTKWG-TGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIM 360
           SCIK+KPTKWG TGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIM
Sbjct: 301 SCIKHKPTKWGTTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIM 360

Query: 361 SGCLNLMSVHCACAVQAHRTLTAFPHSAH 385
           SGCLNLMSVHCACAVQAHR  +AFP+ AH
Sbjct: 361 SGCLNLMSVHCACAVQAHRAPSAFPYPAH 379

[Close]

BLAST of Lsi08G005100 vs. NCBI nr
Match: XP_038884756.1 (F-box protein SKP2A isoform X1 [Benincasa hispida])

HSP 1 Score: 684.9 bits (1766), Expect = 4.1e-193
Identity = 343/387 (88.63%), Postives = 352/387 (90.96%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEKLMM+VGGGDGMDVGAKGVKMDGG+IAGWKDIPMELLLQIVSL
Sbjct: 1   MVGKENLRTEDLNLCFEKLMMVVGGGDGMDVGAKGVKMDGGLIAGWKDIPMELLLQIVSL 60

Query: 61  VDDRTVIVASG---EWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKP 120
           VDDRTVIVASG    W          +++  CKKNMNNLVLSL PKFA+LQTLILRQDKP
Sbjct: 61  VDDRTVIVASGVCRGWRDAICFGLVHLSLSWCKKNMNNLVLSLAPKFAKLQTLILRQDKP 120

Query: 121 QLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALA 180
           QLADDAVETIAS C DLQ LDLSKSFKLSDLSLYALAHGC DLK+LN+SGCTAFSDTALA
Sbjct: 121 QLADDAVETIASYCHDLQALDLSKSFKLSDLSLYALAHGCHDLKRLNVSGCTAFSDTALA 180

Query: 181 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCP 240
           YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCP
Sbjct: 181 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCP 240

Query: 241 DLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS 300
           DLRTLDLCGCVLIT           DSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS
Sbjct: 241 DLRTLDLCGCVLIT----------DDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS 300

Query: 301 CIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG 360
           C KNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG
Sbjct: 301 CRKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG 360

Query: 361 CLNLMSVHCACAVQAHRTLTAFPHSAH 385
           CLNLMSVHCACA+QAHR  TAFPHSAH
Sbjct: 361 CLNLMSVHCACAIQAHRAPTAFPHSAH 377

[Close]

BLAST of Lsi08G005100 vs. NCBI nr
Match: XP_008441569.1 (PREDICTED: F-box protein SKP2A isoform X1 [Cucumis melo] >XP_016899427.1 PREDICTED: F-box protein SKP2A isoform X1 [Cucumis melo])

HSP 1 Score: 674.5 bits (1739), Expect = 5.5e-190
Identity = 344/388 (88.66%), Postives = 353/388 (90.98%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEKLMMLV GGDGMDVGA+GVKMDGGVIAGWKDIPMELLLQIVSL
Sbjct: 1   MVGKENLRTEDLNLCFEKLMMLV-GGDGMDVGARGVKMDGGVIAGWKDIPMELLLQIVSL 60

Query: 61  VDDRTVIVASGEWCK--LDFSSYKLMTVIL--CKKNMNNLVLSLVPKFARLQTLILRQDK 120
           VDDRTVIVASG  C+   D   + L+ + L  CKKNMNNLVLSL PKF +LQ LILRQDK
Sbjct: 61  VDDRTVIVASGV-CRGWRDAICFGLIHLSLSWCKKNMNNLVLSLAPKFGKLQNLILRQDK 120

Query: 121 PQLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTAL 180
           PQL+D AVETIAS C DLQVLDLSKSFKLSDLSLYALAHGC DLK+LNISGCTAFSDTAL
Sbjct: 121 PQLSDHAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCHDLKRLNISGCTAFSDTAL 180

Query: 181 AYLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGC 240
           AYLASYCRKLK LNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENV+DVGVMSLAYGC
Sbjct: 181 AYLASYCRKLKFLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGC 240

Query: 241 PDLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300
           PDLRTLDLCGCVLIT           DSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH
Sbjct: 241 PDLRTLDLCGCVLIT----------DDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300

Query: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360
           SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS
Sbjct: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360

Query: 361 GCLNLMSVHCACAVQAHRTLTAFPHSAH 385
           GCLNLMSVHCACAVQAHR  TAFPHSAH
Sbjct: 361 GCLNLMSVHCACAVQAHRASTAFPHSAH 376

[Close]

BLAST of Lsi08G005100 vs. NCBI nr
Match: XP_004144256.1 (F-box protein SKP2A isoform X1 [Cucumis sativus] >KGN47499.1 hypothetical protein Csa_018924 [Cucumis sativus])

HSP 1 Score: 667.5 bits (1721), Expect = 6.7e-188
Identity = 338/387 (87.34%), Postives = 348/387 (89.92%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEK MMLV  GDGMDVGAKGV+MDGGV+AGWKDIPMELLLQI+SL
Sbjct: 1   MVGKENLRTEDLNLCFEKPMMLV-AGDGMDVGAKGVQMDGGVLAGWKDIPMELLLQILSL 60

Query: 61  VDDRTVIVASG---EWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKP 120
           VDDRTVIVASG    W          +++  C+KNMNNLVLSL PKFARLQ LILRQDKP
Sbjct: 61  VDDRTVIVASGVCRGWRDAICFGLAHLSLSWCQKNMNNLVLSLAPKFARLQNLILRQDKP 120

Query: 121 QLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALA 180
           QL DDAVETIAS C DLQVLDLSKSFKLSDLSLYALAHGCRDLK+LNISGCTAFSDTALA
Sbjct: 121 QLGDDAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCRDLKRLNISGCTAFSDTALA 180

Query: 181 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCP 240
           YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENV+DVGVMSLAYGCP
Sbjct: 181 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCP 240

Query: 241 DLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS 300
           DLR LDLCGCVLIT           DSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS
Sbjct: 241 DLRILDLCGCVLIT----------DDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS 300

Query: 301 CIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG 360
           CIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG
Sbjct: 301 CIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSG 360

Query: 361 CLNLMSVHCACAVQAHRTLTAFPHSAH 385
           CLNL+SVHCACAVQAHR  TAF HSAH
Sbjct: 361 CLNLISVHCACAVQAHRAATAFLHSAH 376

[Close]

BLAST of Lsi08G005100 vs. NCBI nr
Match: KAG6578927.1 (F-box protein SKP2A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 659.8 bits (1701), Expect = 1.4e-185
Identity = 338/388 (87.11%), Postives = 349/388 (89.95%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEKLMMLV GGDG+DVGAKGVKMDGGVIAGWKDIPMELLLQI+SL
Sbjct: 1   MVGKENLRTEDLNLCFEKLMMLVDGGDGIDVGAKGVKMDGGVIAGWKDIPMELLLQIISL 60

Query: 61  VDDRTVIVASGEWCK-LDFSSYKL--MTVILCKKNMNNLVLSLVPKFARLQTLILRQDKP 120
           VDDRTVIVASG  C   D   + L  +++  CKKNMNNLVLSL PKFA+LQTLILRQDKP
Sbjct: 61  VDDRTVIVASGVCCGWRDAICFGLTHLSLSWCKKNMNNLVLSLAPKFAKLQTLILRQDKP 120

Query: 121 QLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALA 180
           QLADDAVETIAS C DLQVLDL KS KLSDLSLYALAHGC DL KLNISGCTAFSDTALA
Sbjct: 121 QLADDAVETIASYCHDLQVLDLRKSSKLSDLSLYALAHGCPDLVKLNISGCTAFSDTALA 180

Query: 181 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCP 240
           YLASYCRKLKVLNLC CVKAASDTALQAIGQYCN LQSVNLGWCENVSDVGVMSLAYGC 
Sbjct: 181 YLASYCRKLKVLNLCSCVKAASDTALQAIGQYCNSLQSVNLGWCENVSDVGVMSLAYGCR 240

Query: 241 DLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS 300
           DLRTLDLCGCVLIT           DSVIA+ANMCPHLRSLGLYYCQNITDRAMYSLAHS
Sbjct: 241 DLRTLDLCGCVLIT----------DDSVIAMANMCPHLRSLGLYYCQNITDRAMYSLAHS 300

Query: 301 CIKNKPTKWG-TGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360
           CIK+KPTKWG TGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS
Sbjct: 301 CIKHKPTKWGTTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360

Query: 361 GCLNLMSVHCACAVQAHRTLTAFPHSAH 385
           GCLNLMSVHCACAVQAHR  +AFP+ AH
Sbjct: 361 GCLNLMSVHCACAVQAHRAPSAFPYPAH 378

[Close]

BLAST of Lsi08G005100 vs. NCBI nr
Match: TYK23778.1 (F-box protein SKP2A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 659.1 bits (1699), Expect = 2.4e-185
Identity = 337/384 (87.76%), Postives = 346/384 (90.10%), Query Frame = 0


Query: 1   MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSL 60
           MVGKENLRTEDLNLCFEKLMMLV GGDGMDVGA+GVKMDGGVIAGWKDIPMELLLQIVSL
Sbjct: 1   MVGKENLRTEDLNLCFEKLMMLV-GGDGMDVGARGVKMDGGVIAGWKDIPMELLLQIVSL 60

Query: 61  VDDRTVIVASGEWCK--LDFSSYKLMTVIL--CKKNMNNLVLSLVPKFARLQTLILRQDK 120
           VDDRTVIVASG  C+   D   + L+ + L  CKKNMNNLVLSL PKF +LQ LILRQDK
Sbjct: 61  VDDRTVIVASGV-CRGWRDAICFGLIHLSLSWCKKNMNNLVLSLAPKFGKLQNLILRQDK 120

Query: 121 PQLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTAL 180
           PQL+D AVETIAS C DLQVLDLSKSFKLSDLSLYALAHGC DLK+LNISGCTAFSDTAL
Sbjct: 121 PQLSDHAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCHDLKRLNISGCTAFSDTAL 180

Query: 181 AYLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGC 240
           AYLASYCRKLK LNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENV+DVGVMSLAYGC
Sbjct: 181 AYLASYCRKLKFLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGC 240

Query: 241 PDLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300
           PDLRTLDLCGCVLIT           DSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH
Sbjct: 241 PDLRTLDLCGCVLIT----------DDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH 300

Query: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360
           SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS
Sbjct: 301 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS 360

Query: 361 GCLNLMSVHCACAVQAHRTLTAFP 381
           GCLNLMSVHCACAVQAHR     P
Sbjct: 361 GCLNLMSVHCACAVQAHRLELTLP 372

[Close]

BLAST of Lsi08G005100 vs. TAIR 10
Match: AT1G21410.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 489.2 bits (1258), Expect = 3.1e-138
Identity = 253/372 (68.01%), Postives = 294/372 (79.03%), Query Frame = 0


Query: 21  MLVGGGDGMDVGA--KGVKMDGGVIAGWKDIPMELLLQIVSLVDDRTVIVASG---EWCK 80
           M++GG   M++    + +KM+G  I  WKDIP+ELL++I+SLVDDR VIVASG    W  
Sbjct: 1   MVMGGEASMELDQCFQKMKMEGISIKEWKDIPVELLMRILSLVDDRNVIVASGVCTGW-- 60

Query: 81  LDFSSYKLMTVIL--CKKNMNNLVLSLVPKFARLQTLILRQDKPQLADDAVETIASNCRD 140
            D  S+ L  + L  C  NMN+LVLSLVPKF +LQTL LRQDKPQL D+AVE IA++C +
Sbjct: 61  RDAISFGLTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHE 120

Query: 141 LQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLASYCRKLKVLNLCG 200
           LQ LDLSKS K++D SLYALAHGC DL KLN+SGCT+FSDTA+AYL  +CRKLKVLNLCG
Sbjct: 121 LQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCG 180

Query: 201 CVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITGT 260
           CVKA +D AL+AIG  CN +QS+NLGWCEN+SD GVMSLAYGCPDLRTLDLCGCVLIT  
Sbjct: 181 CVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLIT-- 240

Query: 261 SLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKW-GTGKGK 320
                    +SV+ALA+ C HLRSLGLYYC+NITDRAMYSLA S +KNKP  W    KGK
Sbjct: 241 --------DESVVALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVKKGK 300

Query: 321 NDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQA 380
            D++GLR+LNISQCTALTP AVQAVCDSFPALHTCSGRHSL+MSGCLNL +VHCAC +QA
Sbjct: 301 YDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQA 360

Query: 381 HRTLTAFPHSAH 385
           HR   A PH AH
Sbjct: 361 HRAHNAVPHPAH 360

[Close]

BLAST of Lsi08G005100 vs. TAIR 10
Match: AT1G77000.1 (RNI-like superfamily protein )

HSP 1 Score: 488.0 bits (1255), Expect = 6.8e-138
Identity = 247/384 (64.32%), Postives = 293/384 (76.30%), Query Frame = 0


Query: 5   ENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSLVDDR 64
           E    ++LNLCFE +                 KM+G +I+ WKDIP+ELL++I++LVDDR
Sbjct: 4   EGATRKELNLCFENM-----------------KMEGVLISEWKDIPVELLMKILNLVDDR 63

Query: 65  TVIVAS---GEWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKPQLAD 124
           TVI+AS     W          +++  CKKNMN+LVLSL PKF +LQTL+LRQDKPQL D
Sbjct: 64  TVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLED 123

Query: 125 DAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLAS 184
           +AVE IA++C +LQ LDLSKS K++D SLY+LA GC +L KLN+SGCT+FSDTALA+L  
Sbjct: 124 NAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTR 183

Query: 185 YCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRT 244
           +CRKLK+LNLCGCV+A SD  LQAIG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLRT
Sbjct: 184 FCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRT 243

Query: 245 LDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKN 304
           LDLC CVLIT           +SV+ALAN C HLRSLGLYYC+NITDRAMYSLA S +KN
Sbjct: 244 LDLCSCVLIT----------DESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKN 303

Query: 305 KPTKW-GTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLN 364
           K   W    KGK D++GLR+LNISQCT LTP AVQAVCD+FPALHTCSGRHSL+MSGCLN
Sbjct: 304 KHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLN 360

Query: 365 LMSVHCACAVQAHRTLTAFPHSAH 385
           L SVHCAC +QAHRT T +PH AH
Sbjct: 364 LQSVHCACILQAHRTHTVYPHPAH 360

[Close]

BLAST of Lsi08G005100 vs. TAIR 10
Match: AT1G77000.2 (RNI-like superfamily protein )

HSP 1 Score: 488.0 bits (1255), Expect = 6.8e-138
Identity = 247/384 (64.32%), Postives = 293/384 (76.30%), Query Frame = 0


Query: 5   ENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSLVDDR 64
           E    ++LNLCFE +                 KM+G +I+ WKDIP+ELL++I++LVDDR
Sbjct: 4   EGATRKELNLCFENM-----------------KMEGVLISEWKDIPVELLMKILNLVDDR 63

Query: 65  TVIVAS---GEWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKPQLAD 124
           TVI+AS     W          +++  CKKNMN+LVLSL PKF +LQTL+LRQDKPQL D
Sbjct: 64  TVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLED 123

Query: 125 DAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLAS 184
           +AVE IA++C +LQ LDLSKS K++D SLY+LA GC +L KLN+SGCT+FSDTALA+L  
Sbjct: 124 NAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTR 183

Query: 185 YCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRT 244
           +CRKLK+LNLCGCV+A SD  LQAIG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLRT
Sbjct: 184 FCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRT 243

Query: 245 LDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKN 304
           LDLC CVLIT           +SV+ALAN C HLRSLGLYYC+NITDRAMYSLA S +KN
Sbjct: 244 LDLCSCVLIT----------DESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKN 303

Query: 305 KPTKW-GTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLN 364
           K   W    KGK D++GLR+LNISQCT LTP AVQAVCD+FPALHTCSGRHSL+MSGCLN
Sbjct: 304 KHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLN 360

Query: 365 LMSVHCACAVQAHRTLTAFPHSAH 385
           L SVHCAC +QAHRT T +PH AH
Sbjct: 364 LQSVHCACILQAHRTHTVYPHPAH 360

[Close]

BLAST of Lsi08G005100 vs. TAIR 10
Match: AT5G23340.1 (RNI-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-24
Identity = 75/254 (29.53%), Postives = 123/254 (48.43%), Query Frame = 0


Query: 119 LADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAY 178
           + D  + +I      LQ LD+S   KLSD  L A+A GC DL+ L+++GC   +D +L  
Sbjct: 111 ITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKS 170

Query: 179 LASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGC-P 238
           L+  CR L+ L L GC    +D+ L  + + C  ++S+++  C NV D GV S+A  C  
Sbjct: 171 LSERCRDLEALGLQGCTN-ITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACAS 230

Query: 239 DLRTLDLCGCVLITGTSLNSNQQI----------------HDSVIALANMC-PHLRSLGL 298
            L+TL L  C  +   S++S  Q                  +S++ LA+ C   L++L +
Sbjct: 231 SLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLRM 290

Query: 299 YYCQNITDRAMYSLAHSCIKNKPTKWGTGK----------GKNDDDGLRTLNISQCTALT 345
            +C NI+D ++  +   C   +    G  +          G +D  GL+ L +S CT +T
Sbjct: 291 DWCLNISDSSLSCILKQCKNLEALDIGCCEEVTDTAFRDLGSDDVLGLKVLKVSNCTKIT 350

[Close]

BLAST of Lsi08G005100 vs. TAIR 10
Match: AT4G15475.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 9.5e-23
Identity = 67/226 (29.65%), Postives = 108/226 (47.79%), Query Frame = 0


Query: 118 QLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALA 177
           ++ + A++ I   C+ L++L L     + D+++ ++A GCR+LKKL+I  C    +  + 
Sbjct: 384 RIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGII 443

Query: 178 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCP 237
            +  +C+ L  L+L  C K   + AL AIG+ C+ LQ +N+  C  +SD G+ ++A GCP
Sbjct: 444 SIGKHCKSLTELSLRFCDK-VGNKALIAIGKGCS-LQQLNVSGCNQISDAGITAIARGCP 503

Query: 238 DLRTLDLCGCVLITGTSLNSNQQIHDSVIA-LANMCPHLRSLGLYYCQNITDRAMYSLAH 297
            L  LD           ++  Q I D  +A L   CP L+ L L +C +ITD  +  L  
Sbjct: 504 QLTHLD-----------ISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQ 563

Query: 298 SCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFP 343
            C                   L T ++  C  +T   V  V  S P
Sbjct: 564 KC-----------------KLLETCHMVYCPGITSAGVATVVSSCP 579

The following BLAST results are available for this feature:

BLAST of Lsi08G005100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPL4	4.3e-137	68.01	F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1	[more]
O49286	9.6e-137	64.32	F-box protein SKP2B OS=Arabidopsis thaliana OX=3702 GN=SKP2B PE=1 SV=1	[more]
A6H779	8.4e-24	29.81	F-box/LRR-repeat protein 2 OS=Bos taurus OX=9913 GN=FBXL2 PE=2 SV=1	[more]
Q58DG6	2.7e-22	27.53	F-box/LRR-repeat protein 20 OS=Bos taurus OX=9913 GN=FBXL20 PE=2 SV=2	[more]
Q96IG2	2.7e-22	27.53	F-box/LRR-repeat protein 20 OS=Homo sapiens OX=9606 GN=FBXL20 PE=1 SV=2	[more]

BLAST of Lsi08G005100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3Q3	2.7e-190	88.66	F-box protein SKP2A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485661 PE=4 SV=1	[more]
A0A0A0KFD6	3.3e-188	87.34	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G344280 PE=4 ...	[more]
A0A5D3DJV0	1.2e-185	87.76	F-box protein SKP2A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1CIQ6	2.0e-185	86.01	F-box protein SKP2A-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110118...	[more]
A0A6J1FF47	2.6e-185	87.15	F-box protein SKP2A-like OS=Cucurbita moschata OX=3662 GN=LOC111444899 PE=4 SV=1	[more]

BLAST of Lsi08G005100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884756.1	4.1e-193	88.63	F-box protein SKP2A isoform X1 [Benincasa hispida]	[more]
XP_008441569.1	5.5e-190	88.66	PREDICTED: F-box protein SKP2A isoform X1 [Cucumis melo] >XP_016899427.1 PREDICT...	[more]
XP_004144256.1	6.7e-188	87.34	F-box protein SKP2A isoform X1 [Cucumis sativus] >KGN47499.1 hypothetical protei...	[more]
KAG6578927.1	1.4e-185	87.11	F-box protein SKP2A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
TYK23778.1	2.4e-185	87.76	F-box protein SKP2A isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi08G005100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21410.1	3.1e-138	68.01	F-box/RNI-like superfamily protein	[more]
AT1G77000.1	6.8e-138	64.32	RNI-like superfamily protein	[more]
AT1G77000.2	6.8e-138	64.32	RNI-like superfamily protein	[more]
AT5G23340.1	2.3e-24	29.53	RNI-like superfamily protein	[more]
AT4G15475.1	9.5e-23	29.65	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 157..182 e-value: 2.3E-5 score: 33.8 coord: 210..235 e-value: 3.6E-6 score: 36.5 coord: 104..130 e-value: 640.0 score: 0.4 coord: 318..340 e-value: 19.0 score: 12.4 coord: 183..209 e-value: 0.46 score: 19.5 coord: 131..156 e-value: 0.045 score: 22.9 coord: 236..261 e-value: 0.065 score: 22.4 coord: 272..297 e-value: 5.7E-8 score: 42.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 257..379 e-value: 2.0E-10 score: 41.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 199..256 e-value: 1.1E-13 score: 52.3 coord: 55..198 e-value: 7.8E-22 score: 79.2
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 272..295 e-value: 1.0 score: 9.6 coord: 209..233 e-value: 5.3E-4 score: 19.9
None	No IPR available	PANTHER	PTHR13318:SF154	F-BOX SKP2A-LIKE PROTEIN	coord: 1..366
None	No IPR available	PANTHER	PTHR13318	UNCHARACTERIZED	coord: 1..366
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 73..343

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G005100.1	Lsi08G005100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding