Lsi08G004760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G004760
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionmonodehydroascorbate reductase 4
Locationchr08: 12556080 .. 12558184 (-)
RNA-Seq ExpressionLsi08G004760
SyntenyLsi08G004760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACTTATTTGGAGCTTTGTTTTTTCAATTAATCTAGGTTTTTTTGTTTGACTTGTTTGGCATTCTTGAGATGTTGAGTTTTGTGATAGTTCATAATTGATCTCTTTTGAACTTTCATAGTTTTTTGGTGTGACTTCCTTGAGAATGACTAGTTTTTAAGATTTCTCTTATGAGTGATTGATTTGCAGCTTTATCATGTCTTCTAATATTCCACACATGTGTTGGCGCTAATGAGGAACAATTAACTCCAAAACCGTACAAAGAACATGGTAAGTTGTTTGTTTCTTCTTCTTGTGTGGTTTAAATTGCTGGTGCATGGAGATGCAGGAAGCTTATTGAGTTTTGATATTGGTGTTCTAGCTTTTATGAACTTTATAATAATGAGTTTCCTTTATACCTCTTGATTTCAATTTTGTGTTGTTCCTTCGTTTCTTCTTGAGATTTGGCTACAACAATATTTCCTATATGTGAGCAGGGTGGAATCGAAGAAGAAATGAGAGAAGAAAAAGAGTGATTTGCATTTTTCTTTCATGACAAAAGTGGGGCCGATCATCTTGAAGATGGATAACGATAGAGAAAATTATGGACAGAAGGTTGTTAAGAACATGAGTACTTACCCCAGGTTTGTTCGCTAAAACCAAGCCTAAGAATTGGTTATTTTGTGTTGTCTTACTTGAATCTACATTAGAATTAGTCATTGAATTGTGAAAAAAAAAAAGCAAGTATAATTTGTGTTTGAGATAATCCTGCTACATCATTCCATGCTTTCTTCTATAAATATTTATTTTTGGGTGTCTTTTACTACAACATAACCTTTCTTCTATCTTGAATTAGCTTAAAATTGAAGTGGAGAAATACTTGCTCTCTGTGACTTAGATATTTGTGAATTGATTTGAACCATTGTGCCTATTTTATGTTGATTTCAATAAAATAATCAACGTTGACTGCAAATTTTGACAATTGTTCCTGTTTTTCTTTTGCTTCTCGAACTACATTTTGATTTAATGCATTCTTTGGGATTCTGTCGGAACAATTTCAAACCACAATTTTGAGAACATGGTTAGTGTTTCTTGCTTTATATCTCAAGTTTAGCATACCCAAATCAATACTCATACCCTAATAGAATCTTGATTTTGTCATAATGCTAAAGACCCAAACTTTTTCTATTTTTATCTTTCCAAACCCTTTTTGTTTTTATTATAAGTTGATTTTTCTTGTGTATATCTTCTGAAATTTCAATGCTTAGGTCTCCAATGTAGCAAGTTTAACATACAAAGTGTTAGTTACGTTGTTAGTTACTTAAGGTTGCAAATTGTCTCCTAAACTAGAATACGCTACTTTGTCACACAAAGGTGGTAATTTTGAATGGTTTAGAAGTGGCTAAGTCTTTAAGCACATAGTCTTCTTTAGGCACGTTGTTGATTCTTATTGTATGACTATCCTACAATTATGGTAGCCCATAAAGTTTCATTTTTATGTTGTTATTTTAATGAGTTATTGGCTTTTGTTTAAGTTTTTTTTTTTCCTTTTAATTAAACTAGTTTAGTATTCATTTCCATGACAAGTTTGTGTAAGTTGTTAATTTCCACATTTTCTTCAGTTAGTATATGCATGTTTTAATCTGTGTCTTATATTTTTATGTTAAAAGTTGATCATTAGCTTGGAAGTCGTCGAGTTATGCATATACGATGTCTAAGGTTGGTTTTTGACCTATTTATGATTAAAATTTGATTTTTAAGTCTAGTGTGTGTTATCAAAGATTGATTTTAGGCCTATTTGTGTGATCAAAATATTATTTTCAAGTTTATTGTGCGTTCAAGTTTCTCATTTAGATTTTTGAGTACATGGGAGTGAGGGAATGCTTAGATATATATTGTTTTGAGTGTAAGGGGGTGGATGGGCCTTTCTAAATATAAAGTGTTAGTTATGTTGTTAGTTCCTTAAAGGAAAATACAATTGTCTCTAAAGACAAACTTCCCTGATGCTTTGTGTTTTGACATCAATAAAGGGTCTCCCGTTGAACAATCGGGAGAATCTTTGCCATGCTATTGAAATTAGAATCAGGTTGATATGTGAGGCAACGATGGTTGAATATCTATAA

mRNA sequence

ATGGCTTTATCATGTCTTCTAATATTCCACACATGTGTTGGCGCTAATGAGGAACAATTAACTCCAAAACCGTACAAAGAACATGGTTGCAAATTGTCTCCTAAACTAGAATACGCTACTTTGTCACACAAAGGTGCTTGGAAGTCGTCGAGTTATGCATATACGATGTCTAAGGGTCTCCCGTTGAACAATCGGGAGAATCTTTGCCATGCTATTGAAATTAGAATCAGGTTGATATGTGAGGCAACGATGGTTGAATATCTATAA

Coding sequence (CDS)

ATGGCTTTATCATGTCTTCTAATATTCCACACATGTGTTGGCGCTAATGAGGAACAATTAACTCCAAAACCGTACAAAGAACATGGTTGCAAATTGTCTCCTAAACTAGAATACGCTACTTTGTCACACAAAGGTGCTTGGAAGTCGTCGAGTTATGCATATACGATGTCTAAGGGTCTCCCGTTGAACAATCGGGAGAATCTTTGCCATGCTATTGAAATTAGAATCAGGTTGATATGTGAGGCAACGATGGTTGAATATCTATAA

Protein sequence

MALSCLLIFHTCVGANEEQLTPKPYKEHGCKLSPKLEYATLSHKGAWKSSSYAYTMSKGLPLNNRENLCHAIEIRIRLICEATMVEYL
Homology
[Close]
BLAST of Lsi08G004760 vs. ExPASy Swiss-Prot
Match: Q9LK94 (Monodehydroascorbate reductase 4, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=MDAR4 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-04
Identity = 18/24 (75.00%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 9  FHTCVGANEEQLTPKPYKEHGCKL 33
          FHTCVGAN+E+LTPK YK+HG +L
Sbjct: 65 FHTCVGANDEKLTPKWYKDHGIEL 88

[Close]
BLAST of Lsi08G004760 vs. TAIR 10
Match: AT3G27820.1 (monodehydroascorbate reductase 4 )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 18/24 (75.00%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 9  FHTCVGANEEQLTPKPYKEHGCKL 33
          FHTCVGAN+E+LTPK YK+HG +L
Sbjct: 65 FHTCVGANDEKLTPKWYKDHGIEL 88

The following BLAST results are available for this feature:
BLAST of Lsi08G004760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LK942.9e-0475.00Monodehydroascorbate reductase 4, peroxisomal OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of Lsi08G004760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G004760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G004760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G27820.12.0e-0575.00monodehydroascorbate reductase 4 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G004760.1Lsi08G004760.1mRNA