Lsi08G004470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G004470
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionReplication factor C subunit like
Locationchr08: 12109074 .. 12114841 (+)
RNA-Seq ExpressionLsi08G004470
SyntenyLsi08G004470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAATCTCTTTCCGGGGTGGAGTCGAGGGTTCCGGTCGACTGCCCCGAATCTGTTTGGCGCCATATTTCCAATTAACTAAATAATAATAATAAAAAAGAAATTGAAAAGTAAAAAAAAAAAAAACGCAGCCGGTCCAGCTCCAGTCTCCGATCGCGCAGCCACCACGACGGCGAGAGAAAATCCACACTCTGAAGCAGCTCGGTCCAGTTCCAGTTCCGAAATTGTTCATCAATGTCGGAAGTAATTGCCGTGATGGATATTGACGACGATAACGGCAACAAAGAAGCTGAAAAGCCAGTCAAGGGCAAAAACGTTGCCAGTCCTGCCGCCACACCGGAGGGCAAAGCAATACCCTGGGTCGAGAAGTTCCGCCCTAAGTCTCTCGCTGATGTTGCTGCTCACCGCGACATTGTGGACACCAGTAAGACTCTTATACCATAAAGTAGACTGCTCGATACGTTAGGGTTCTAGCTTTCAGTGGTTTACTCTTTACTTTCCTTCTATATCACACTCAATCTGAAAGTAGGGACTCGTTTGTTGTTGAAAGAATAGTTTAAAACAGCGAACGGTTGTGATAAGGAATTCATGTGTTTGCCAAATTAATTTTCTTAATTTTGCAAAATTCATGCTTGATATTTCAATTATCATGTTCTTATTTTTGTGGTCTCTTGGTTTTCTTTCTTGTATGTGGAATGTTAATTAGTCGACAAGCTGACGAGTGAGAATAGGTTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGTATGGTTAATTATCTATCATTCATTTTCCCTCTTGCTTTCTTTGGCAATCAGTCTAAACTCTTGATTAGAAACAATAGTCTCTGTAAAATTGGGAGTATGTTTGAGGAGTTCGGTGTAGTATATTACATGGCAACTGATCACTCGTCAGTGAGCAAGCAAACTATTTCATTTTTGAATTATGTAATGGTCCATCATTGCAATGCAATGTGTATTAGAGTAGGGTAAAACTGTGTTTTAAGTGTCTTTTTGACACTTTGTTGGTATTGATTGATGGCTTATTGATACAAAATGACTATTACACTAAATACAATTTATTGCCCTTATCTCAGTACAATTTATTTAGAATACAGCATTTTTATGCAGCTTATAACATCTAAATTTGCAGGGCAAAGGCGTCCGTAAAATTGGTATTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGGTAGAGGCTTCTCTCACATGTTGCTACTCTCACCTCTCTCCCCAACTTTCATTGAGCTTCATTACCCTATGCCTATTGTTGCTATATTTGTCTTATGCAGTAATTGAGAAATACACGAAAAATACAAGATTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGACAACTTTCATGTCACTGAACGACTCAAATATGTTATTGAGGCTGAGAGGTACACTCCCCCTTGTTTCACTTACAATACATGCTTAAGTCTCATTATTGCTTACATTATGTCTGACAACCAAATATACAAAGTCTTTGATGGTTTTGGATCTATGATATATTGATGTTTAATGACAATTTCCTTTATATCTTATTCTGATAATTCAATCTATCATTCTAGCTTTGTAAATAATGGGGGTAGAATGCACAATGTCTCTCTTTCTCTCCATATTTTGTTTACCAAGGACATTTTTAGTAGAGCTCATTAAACTCCTTATTGTTATTCAATGAATATGTAATGGTTATTATGCTTGAAGTTTCTTTGGGACATTCTGTCCTACTTTTTGTCAATGCATCTTTGCTCTTCCATAAAGTTTCACTTTTAAAAAGAACGTGTAATTCATTGAACCTTTGTTGTTTTTGGAGGTGATGTTAGTTGGAGTCCGCATTTTATGAAGGTTGTCTATTGAACTGTTTTACTCATTTCTTTTAGAAACTATACTGGGCCACGGCATGTGAACGTACGTCTAATGATCTATAACTGAATGGTAATCAGGTTGGATGTCACTGAGAGTGGCTTAGCTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCCTTAAATATTCTGCAGGTAATAATGTTTTTATTTAACTGTTGTTTTCTGGCTTTGGTGGCATTGTCCCTATTAGGTCAGAAAATCAGAATAAAGTGATGACTTCATTTTATGAGAATTAAGAAATATGGGAGTGTAAATGGAAAACACGTCATGTCAGTAATATGAAACTTGGGCAACTTGCTCCCCTTTATTAAAGATTAAGATTGCGATATCCTGTTACACAATCACTGTTAAAGTGGGTTTTTCACCTCTCCAATTTTCACCCTTCCTTTGTTCACTAGTAACAGGATTGGACTATAGAGATAGACGTTAATCATTACTTGAAAATTTGGAGGAAGTGATACGGGCAACCCTAGAGTAATGGCTTAGCAACCCTAGTAAAAACTAACACCTCTTGAACATTAACTATTACTTTAAAATTTGGTTGAAGTGATAAGGACAACTCTAGAGAAATGGCTTAGCAATCCGAATAAAAACTAGCACCTCTTAAACACACAAAGTAAGAACTTTCTTACACACAGGATAACACTCAAGAGGAAGCAAGATGGTTATGTTGATGGCCTAATACCTCCCGGAAGAAGGCTAGCTTAAATCTAATGTCCAATTACTCCACAAGTTTGGTGACCAACTAAGCTTGAATGATTCTATGGCTTTTTGTGCAGGCAATACTAAGCAAATTACCATGAGACTCGTTACACTTAAAAGGAGGAGAGAACTCTCAACTCAACATTTGGATATCTGTGAGTGTTTGGGCCCACCTCGACTAATCTCATGGGACAACCTGCCTGAACCTACAACATTTGGGTGTCAAGAAAACTTGTAGGATATTAAATTCTAAGTAGGTGGCCACCATGGATTGAACCCATTACCTCTTAGTCTTTTATCAAACTCATGCCCTTTATTTACCATTAGGCCAACCCACGATGGCTATTCAACGAGAGCATTCTAGGTTACAAATGAACATAAGTTGGCTTATATATGGCCAACCAAAAACTATAAATAGTTTTAACCTAATAAAACATACAAAAATCTACCTAAAACAAGTAAAGTTTAGAGCTGAGGGAGGGAATTGGGCCTCTGCCCTTATAAAAGAAGCCCACAATTAAAGTCATTGGTCAACAAGAAGTCAACAAAATTACAATCAACCAAAATAAGTCCAAAACTAAAATCCATTACTATTATAGGTGCCTCATAGCCTTGGTGCTCAACCAAAACTTCAAGTCATGCTATCTCCTTGGTGCTTTTTTTGTGGTCTTTGGTTCATATCAGCAAGTTTCAAGATCAATAGTTTTAACTTTATATGGTGTTCTCAACATTTCCGTGTGTTAAAGTCTTACAGAATTGAGCTGTGATTTCAGCAACAAAGAAAAAAGAAAGTAGTTCAAATAATTAGAGTTATTACGACATTCATATTTTTTAGTTCCTGTCTTCTTTTAGTAATAAGAGAAATGATCTAACTGTGAATAAGAAGGGCCATAAAGCACTCCCAAATCTCTGCAATCTCTGCACCGCAATCTGCATATTTTGGACATTTGGACCATAATGCACCCTTAAATCAACATGCATTTTTGCATGCGACATTCCTTTACAACTCGTAGATCAATAGAAGACATTTACGTATGTTATTTAGTTCATTTGTTGTTACTTTGTGATCCTGATGACATTTTTGAAATTTTGTCTTTTTTATGTAGTCAACGCATATGGCTTCACAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGTAATTTGTTTTCTCTGGAATTTTCCATTTATTTTGATGTGTTTTGCCAGTTTTTATTTATTCCTACCTTTCTCATTTACAGGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTGAGTGCTTTTTCTTAATTTGTATGATTTCTTAGCGATGATTTTTGCTTGACTTTCCCCACTGTTCAATTTATGTAGGTTCGTTTTTAAGATAAAGATGCCATCGGATATCAGAGTCCAGTTGATTAATGATCTGGCTGACATAGAGTATGCATCAATCTCTCTACTTATGTAATTTATTGTTAAGTTTTATTATTTTATTCTGTTGAAATATGTGTGATCTGCAAAGTAACGGGCACCATCATCAACTTGAACAAACATTGACCAATACTCAACTTTTTGATGTTGATATCCACCATACACATTTTATCCGATTTGTTATTCAACAATAAGTAAATCGAAAGGTTAAAAAAACTGGGGTTCCTTTCTTTCTTTCTTTACTTTTGTGTGTGTGGATGGGTAAAGAGCTTAATAAGTTAAAGAGTATTTTGACATATAAGTAGAAAAGGACAAGGGAATCTAAGTTTTCCAATCTAACTTCTAAAACATTCTTTCTCATCTACTTCTACTTTTGTAAGCCAAAAGTTCTGTTGTATCTTTTAGTTCAATGAATATAAAGCACTTCTCCAGCTGTATGGCCTTTACGTGCACTATCATAGAATTATGCTGCAGTTTTTTTATGGATAAAGATGAAGGACATTCTATCATATGATTTGCTGTTATCTTCTGATCTTATCCTTTTCAATTTGAAAAAGCATGGTCAACTGCTGTACCTAACACAATTATTTCTAATAAAGCTTTAAACATGAATCAATGATCTCATTAGTTGGAAAAGACTTAGCTAATTAAGCATATTCTTGCATTGCTTGTAAGTTGTAACTTCACCCAACTAAATGAATCTATCCCGTAAATCAATAGAATATAATAGGCTTAAAGTTTTCAAAGACCTGAAGATGATAATGTCTTTTCATGATATTCTTTTTACCAAAGTATGAGTAGGGATTTCTTAACTTGATCAAGATTTTTTTAAGGAAAAAAAAACCCCCCAAAATGGGAGGGGATTCATCTTAAGTTCTTTAATCTGTTACTGAATTAACCAGTCTGACCGGTTGCTATTTGTAGGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTTGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAGTTTCATTGGCTGAAGCGAGATTTTGTAACGTATTAGGGCGCTTTGCTCACCAACCATCTGTCACGCACGTGTGTGTGGATTAGGTACCAACTGTAGAAAATGTGAACATATTCTTCATTTGACTTCCAGCTTTTGATGCAGAAAAGTAAATGCTGATATTGATGTTCTTTGTATGGGAAGGAAATGTAATATTTGAAAGTTTGAAAGTCTGCAAGAAAAGGTTAGATTACATTTAAAGTATTTCTTTGTTCTTGTTGGACTGATTCACTTCCAATTTTTCGGCACATGCTTATCTTTAATAGTAGTTTGTCTACAACCACCCATCCTTTGATCTCATGCGTGCTGAATTTGTTTAATTGCATTATTGAGCTTTAG

mRNA sequence

AAAAAAATCTCTTTCCGGGGTGGAGTCGAGGGTTCCGGTCGACTGCCCCGAATCTGTTTGGCGCCATATTTCCAATTAACTAAATAATAATAATAAAAAAGAAATTGAAAAGTAAAAAAAAAAAAAACGCAGCCGGTCCAGCTCCAGTCTCCGATCGCGCAGCCACCACGACGGCGAGAGAAAATCCACACTCTGAAGCAGCTCGGTCCAGTTCCAGTTCCGAAATTGTTCATCAATGTCGGAAGTAATTGCCGTGATGGATATTGACGACGATAACGGCAACAAAGAAGCTGAAAAGCCAGTCAAGGGCAAAAACGTTGCCAGTCCTGCCGCCACACCGGAGGGCAAAGCAATACCCTGGGTCGAGAAGTTCCGCCCTAAGTCTCTCGCTGATGTTGCTGCTCACCGCGACATTGTGGACACCATCGACAAGCTGACGAGTGAGAATAGGTTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAGGCGTCCGTAAAATTGGTATTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACGAAAAATACAAGATTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGACAACTTTCATGTCACTGAACGACTCAAATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAGCTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCCTTAAATATTCTGCAGTCAACGCATATGGCTTCACAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCGGATATCAGAGTCCAGTTGATTAATGATCTGGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTTGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAGTTTCATTGGCTGAAGCGAGATTTTGTAACGTATTAGGGCGCTTTGCTCACCAACCATCTGTCACGCACGTGTGTGTGGATTAGGTACCAACTGTAGAAAATGTGAACATATTCTTCATTTGACTTCCAGCTTTTGATGCAGAAAAGTAAATGCTGATATTGATGTTCTTTGTATGGGAAGGAAATGTAATATTTGAAAGTTTGAAAGTCTGCAAGAAAAGGTTAGATTACATTTAAAGTATTTCTTTGTTCTTGTTGGACTGATTCACTTCCAATTTTTCGGCACATGCTTATCTTTAATAGTAGTTTGTCTACAACCACCCATCCTTTGATCTCATGCGTGCTGAATTTGTTTAATTGCATTATTGAGCTTTAG

Coding sequence (CDS)

ATGTCGGAAGTAATTGCCGTGATGGATATTGACGACGATAACGGCAACAAAGAAGCTGAAAAGCCAGTCAAGGGCAAAAACGTTGCCAGTCCTGCCGCCACACCGGAGGGCAAAGCAATACCCTGGGTCGAGAAGTTCCGCCCTAAGTCTCTCGCTGATGTTGCTGCTCACCGCGACATTGTGGACACCATCGACAAGCTGACGAGTGAGAATAGGTTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAGGCGTCCGTAAAATTGGTATTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACGAAAAATACAAGATTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGACAACTTTCATGTCACTGAACGACTCAAATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAGCTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCCTTAAATATTCTGCAGTCAACGCATATGGCTTCACAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCGGATATCAGAGTCCAGTTGATTAATGATCTGGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTTGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAG

Protein sequence

MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ
Homology
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BLAST of Lsi08G004470 vs. ExPASy Swiss-Prot
Match: Q9CAQ8 (Replication factor C subunit 5 OS=Arabidopsis thaliana OX=3702 GN=RFC5 PE=1 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 8.7e-156
Identity = 285/372 (76.61%), Postives = 324/372 (87.10%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPV-KGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRD 60
           M+E+ + MDID D    +  KP+ KGK+V      P+ KA PWVEK+RP+SL DVAAHRD
Sbjct: 1   MTELTSAMDIDVD--EIQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRD 60

Query: 61  IVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDV 120
           I+DTID+LT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG  Y NMILELNASDDRGIDV
Sbjct: 61  IIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDV 120

Query: 121 VRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 180
           VRQQIQDFASTQSFS G K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALI NH
Sbjct: 121 VRQQIQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNH 180

Query: 181 VNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKAL 240
           VNKIIPALQSRCTRFRFAPLD  H+++RLK+VIEAERL V++ GLAALVRL +GDMRKAL
Sbjct: 181 VNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKAL 240

Query: 241 NILQSTHMASQHITEEA--------VYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEI 300
           NILQSTHMAS+ ITEE         VYLCTGNP+PKDIEQIS WLLN+PF + +K +SEI
Sbjct: 241 NILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEI 300

Query: 301 KTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSF 360
           KTRKGLA+VDIV+E+TLF+FKIKMPS +RVQLINDLADIEYR+SFGCNDKLQLG++IS+F
Sbjct: 301 KTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTF 360

Query: 361 TRARSALVAAAQ 364
           T ARS +V AA+
Sbjct: 361 THARSIIVGAAK 369

[Close]
BLAST of Lsi08G004470 vs. ExPASy Swiss-Prot
Match: Q6YZ54 (Replication factor C subunit 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 1.5e-155
Identity = 280/362 (77.35%), Postives = 318/362 (87.85%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           M+   A   +D D          KGK  A  ++TP G+A PWVEK+RP+SL DVAAHRDI
Sbjct: 1   MAGATAATPMDIDAAAPPPGAAAKGK--APLSSTPGGRAAPWVEKYRPQSLGDVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTID+LT+ENRLPHLLLYGPPGTGKTSTILAVARKLYG+ Y NMILELNASD+RGIDVV
Sbjct: 61  VDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYGNMILELNASDERGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFAS +S SFGAK SVK+VLLDEADAMTKDAQFALRRVIEK+T++TRFALICNHV
Sbjct: 121 RQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLD  HV ERLK++I++E LDV + GL ALVRL +GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMAS+ ITEEAVYLCTGNPMPKDIEQI++WLLNE FS SFK IS++K RKGLALV
Sbjct: 241 ILQSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKMRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DI+REVT+FVFKI+MPSD+R++LINDLADIEYR+SF CNDKLQLG+LIS+FT AR+A+VA
Sbjct: 301 DIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTGARTAMVA 360

Query: 361 AA 363
           AA
Sbjct: 361 AA 360

[Close]
BLAST of Lsi08G004470 vs. ExPASy Swiss-Prot
Match: P40937 (Replication factor C subunit 5 OS=Homo sapiens OX=9606 GN=RFC5 PE=1 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 8.3e-106
Identity = 195/338 (57.69%), Postives = 259/338 (76.63%), Query Frame = 0 

Query: 26  KNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTG 85
           K    PAAT + + +PWVEK+RP++L D+ +H+DI+ TI K  +E+RLPHLLLYGPPGTG
Sbjct: 7   KQQEQPAAT-KIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTG 66

Query: 86  KTSTILAVARKLY-GTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLV 145
           KTSTILA A++LY    + +M+LELNASDDRGID++R  I  FAST++     K   KLV
Sbjct: 67  KTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLV 126

Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHV 205
           +LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN+++KIIPALQSRCTRFRF PL    +
Sbjct: 127 ILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELM 186

Query: 206 TERLKYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNP 265
             RL++V+E E++D++E G+ ALV L SGDMR+ALNILQST+MA   +TEE VY CTG+P
Sbjct: 187 VPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHP 246

Query: 266 MPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLI 325
           +  DI  I  W+LN+ F+ +++ I+E+KT KGLAL DI+ E+ LFV ++  PS +R+ L+
Sbjct: 247 LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLL 306

Query: 326 NDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAA 363
             +ADIEYR+S G N+K+QL SLI++F   R  +VA A
Sbjct: 307 TKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA 340

[Close]
BLAST of Lsi08G004470 vs. ExPASy Swiss-Prot
Match: Q9D0F6 (Replication factor C subunit 5 OS=Mus musculus OX=10090 GN=Rfc5 PE=1 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.8e-105
Identity = 194/331 (58.61%), Postives = 253/331 (76.44%), Query Frame = 0 

Query: 33  ATPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILA 92
           A    + +PWVEK+RP++LAD+ +H+DI+ TI K  SE+RLPHLLLYGPPGTGKTSTILA
Sbjct: 12  AAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 71

Query: 93  VARKLY-GTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADA 152
            A++LY    + +M+LELNASDDRGID+VR  I  FAST++     K   KLV+LDEADA
Sbjct: 72  CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADA 131

Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYV 212
           MT+DAQ ALRRVIEK+T+NTRF LICN+++KIIPALQSRCTRFRF PL    +  RL++V
Sbjct: 132 MTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHV 191

Query: 213 IEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQ 272
           ++ E +D++E G+ ALV L SGDMR+ALNILQST+MA   +TEE VY CTG+P+  DI  
Sbjct: 192 VQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIAN 251

Query: 273 ISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIE 332
           I  W+LN+ F+ ++K I E+KT KGLAL DI+ EV LFV ++  PS +R+ L+  +ADIE
Sbjct: 252 ILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIE 311

Query: 333 YRMSFGCNDKLQLGSLISSFTRARSALVAAA 363
           YR+S G ++K+QL SLI++F   R  +VA A
Sbjct: 312 YRLSVGTSEKIQLSSLIAAFQVTRDLIVAEA 339

[Close]
BLAST of Lsi08G004470 vs. ExPASy Swiss-Prot
Match: Q54ST4 (Probable replication factor C subunit 5 OS=Dictyostelium discoideum OX=44689 GN=rfc5 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.4e-99
Identity = 185/320 (57.81%), Postives = 234/320 (73.12%), Query Frame = 0 

Query: 38  KAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKL 97
           +++PWVEK+RPK+L D+ AH DI  TI KL   N LPHLL YGPPGTGKTSTI A+ARKL
Sbjct: 22  ESLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKL 81

Query: 98  YGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQ 157
           YG NY  M+LELNASDDRGIDVVR+QI+ FAS+  F F      KL++LDEAD+MT  AQ
Sbjct: 82  YGDNYSRMVLELNASDDRGIDVVREQIKTFASSM-FFFNTTVPYKLIILDEADSMTNIAQ 141

Query: 158 FALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERL 217
            ALRRVIEKYTK TRF ++CN+V KIIPALQSRCTRFRF+PL       RLK +IE E +
Sbjct: 142 TALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENV 201

Query: 218 DVTESGLAALVRLCSGDMRKALNILQSTHMAS--QHITEEAVYLCTGNPMPKDIEQISFW 277
            V    + A++ L  GDMRK LNILQS  M+S   +ITEEA+Y CTG PMP DIE +  W
Sbjct: 202 KVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDW 261

Query: 278 LLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMS 337
           LLN  + ++F+ IS++K +KGL+L DI+  +  FV +I + + I  +L++ L+DIEY +S
Sbjct: 262 LLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLS 321

Query: 338 FGCNDKLQLGSLISSFTRAR 356
            G ++KLQLGSL+  F  +R
Sbjct: 322 IGSSEKLQLGSLVGCFQLSR 340

[Close]
BLAST of Lsi08G004470 vs. ExPASy TrEMBL
Match: A0A5A7UJX6 (Replication factor C subunit 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00240 PE=3 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 4.0e-196
Identity = 355/363 (97.80%), Postives = 358/363 (98.62%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSEVI+VMDIDDDNGN EAEK VKGKNVASPAA PE KAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEVKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERL+YVIEAERLDVTESGLAALVRLCSGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKIKMPS+IRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA
Sbjct: 301 DIVREVTLFVFKIKMPSNIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. ExPASy TrEMBL
Match: A0A1S3CRX1 (replication factor C subunit 5 OS=Cucumis melo OX=3656 GN=LOC103504076 PE=3 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 4.0e-196
Identity = 355/363 (97.80%), Postives = 358/363 (98.62%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSEVI+VMDIDDDNGN EAEK VKGKNVASPAA PE KAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEVKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERL+YVIEAERLDVTESGLAALVRLCSGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKIKMPS+IRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA
Sbjct: 301 DIVREVTLFVFKIKMPSNIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. ExPASy TrEMBL
Match: A0A0A0KDS9 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G382960 PE=3 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 9.9e-195
Identity = 351/363 (96.69%), Postives = 357/363 (98.35%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSEVI+VMDIDDDNGN EAEK VKGKNVASPAA PEGKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERL+YVIEAERLDVTE GLAALVRLC+GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKI+MPS+IRVQLINDLADIEYRM+FGCNDKLQLGSLISSFT ARSALV 
Sbjct: 301 DIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFTGARSALVG 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. ExPASy TrEMBL
Match: A0A6J1K1F8 (replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489762 PE=3 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 4.1e-193
Identity = 346/363 (95.32%), Postives = 355/363 (97.80%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSE IAVMDIDDDNGN E EK V+GKNVASPA  P+GKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVASPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLD FHVTERL+YVIEAERLDVTESGLAALVRLC+GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDTFHVTERLRYVIEAERLDVTESGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNP+PKDI+QISFWLLNEPFSDSFKRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIDQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKIKMPSD+RVQL+NDLADIEYRMSFGCNDKLQLGSLISSFTRARSAL+A
Sbjct: 301 DIVREVTLFVFKIKMPSDVRVQLVNDLADIEYRMSFGCNDKLQLGSLISSFTRARSALIA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. ExPASy TrEMBL
Match: A0A6J1FMN6 (replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111445586 PE=3 SV=1)

HSP 1 Score: 683.3 bits (1762), Expect = 5.4e-193
Identity = 347/363 (95.59%), Postives = 354/363 (97.52%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSE IAVMDIDDDNGN E EK V+GKNVA PA  P+GKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVAGPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDN HVTERL+YVIEAERLDVTESGLAALVRLC+GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTESGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNP+PKDIEQISFWLLNEPFSDSFKRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKIKMPSD+RVQL+NDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA
Sbjct: 301 DIVREVTLFVFKIKMPSDVRVQLVNDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. NCBI nr
Match: XP_038886416.1 (replication factor C subunit 3 [Benincasa hispida])

HSP 1 Score: 699.5 bits (1804), Expect = 1.5e-197
Identity = 357/363 (98.35%), Postives = 360/363 (99.17%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSEVIAVMDIDDDNGN EAEKPVKGKNVASPAA P+GKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVIAVMDIDDDNGNNEAEKPVKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNY NMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYQNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFK+KMPSDIRV+LINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA
Sbjct: 301 DIVREVTLFVFKLKMPSDIRVRLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. NCBI nr
Match: XP_008466735.1 (PREDICTED: replication factor C subunit 5 [Cucumis melo] >KAA0055454.1 replication factor C subunit 5 [Cucumis melo var. makuwa])

HSP 1 Score: 693.7 bits (1789), Expect = 8.3e-196
Identity = 355/363 (97.80%), Postives = 358/363 (98.62%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSEVI+VMDIDDDNGN EAEK VKGKNVASPAA PE KAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEVKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERL+YVIEAERLDVTESGLAALVRLCSGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKIKMPS+IRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA
Sbjct: 301 DIVREVTLFVFKIKMPSNIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. NCBI nr
Match: XP_004149801.1 (replication factor C subunit 3 [Cucumis sativus] >KGN47708.1 hypothetical protein Csa_018322 [Cucumis sativus])

HSP 1 Score: 689.1 bits (1777), Expect = 2.0e-194
Identity = 351/363 (96.69%), Postives = 357/363 (98.35%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSEVI+VMDIDDDNGN EAEK VKGKNVASPAA PEGKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERL+YVIEAERLDVTE GLAALVRLC+GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKI+MPS+IRVQLINDLADIEYRM+FGCNDKLQLGSLISSFT ARSALV 
Sbjct: 301 DIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFTGARSALVG 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. NCBI nr
Match: XP_022993904.1 (replication factor C subunit 3-like [Cucurbita maxima])

HSP 1 Score: 683.7 bits (1763), Expect = 8.6e-193
Identity = 346/363 (95.32%), Postives = 355/363 (97.80%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSE IAVMDIDDDNGN E EK V+GKNVASPA  P+GKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVASPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLD FHVTERL+YVIEAERLDVTESGLAALVRLC+GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDTFHVTERLRYVIEAERLDVTESGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNP+PKDI+QISFWLLNEPFSDSFKRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIDQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKIKMPSD+RVQL+NDLADIEYRMSFGCNDKLQLGSLISSFTRARSAL+A
Sbjct: 301 DIVREVTLFVFKIKMPSDVRVQLVNDLADIEYRMSFGCNDKLQLGSLISSFTRARSALIA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. NCBI nr
Match: XP_022939828.1 (replication factor C subunit 3-like [Cucurbita moschata])

HSP 1 Score: 683.3 bits (1762), Expect = 1.1e-192
Identity = 347/363 (95.59%), Postives = 354/363 (97.52%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDI 60
           MSE IAVMDIDDDNGN E EK V+GKNVA PA  P+GKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVAGPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDN HVTERL+YVIEAERLDVTESGLAALVRLC+GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTESGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNP+PKDIEQISFWLLNEPFSDSFKRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300

Query: 301 DIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360
           DIVREVTLFVFKIKMPSD+RVQL+NDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA
Sbjct: 301 DIVREVTLFVFKIKMPSDVRVQLVNDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AAQ 364
           AAQ
Sbjct: 361 AAQ 363

[Close]
BLAST of Lsi08G004470 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 551.2 bits (1419), Expect = 6.2e-157
Identity = 285/372 (76.61%), Postives = 324/372 (87.10%), Query Frame = 0 

Query: 1   MSEVIAVMDIDDDNGNKEAEKPV-KGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRD 60
           M+E+ + MDID D    +  KP+ KGK+V      P+ KA PWVEK+RP+SL DVAAHRD
Sbjct: 1   MTELTSAMDIDVD--EIQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRD 60

Query: 61  IVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDV 120
           I+DTID+LT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG  Y NMILELNASDDRGIDV
Sbjct: 61  IIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDV 120

Query: 121 VRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 180
           VRQQIQDFASTQSFS G K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALI NH
Sbjct: 121 VRQQIQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNH 180

Query: 181 VNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKAL 240
           VNKIIPALQSRCTRFRFAPLD  H+++RLK+VIEAERL V++ GLAALVRL +GDMRKAL
Sbjct: 181 VNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKAL 240

Query: 241 NILQSTHMASQHITEEA--------VYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEI 300
           NILQSTHMAS+ ITEE         VYLCTGNP+PKDIEQIS WLLN+PF + +K +SEI
Sbjct: 241 NILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEI 300

Query: 301 KTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSF 360
           KTRKGLA+VDIV+E+TLF+FKIKMPS +RVQLINDLADIEYR+SFGCNDKLQLG++IS+F
Sbjct: 301 KTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTF 360

Query: 361 TRARSALVAAAQ 364
           T ARS +V AA+
Sbjct: 361 THARSIIVGAAK 369

[Close]
BLAST of Lsi08G004470 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 216.5 bits (550), Expect = 3.6e-56
Identity = 126/335 (37.61%), Postives = 186/335 (55.52%), Query Frame = 0 

Query: 29  ASPAATPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTS 88
           +S  +T +G   PWVEK+RP  + D+  + D V  +  +  +  +P+L+L GPPGTGKT+
Sbjct: 4   SSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 63

Query: 89  TILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDE 148
           +ILA+A +L GTNY   +LELNASDDRGIDVVR +I+ FA  Q          K+V+LDE
Sbjct: 64  SILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFA--QKKVTLPPGRHKVVILDE 123

Query: 149 ADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERL 208
           AD+MT  AQ ALRR IE Y+ +TRFAL CN   KII  +QSRC   RF+ L +  +  RL
Sbjct: 124 ADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRL 183

Query: 209 KYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKD 268
             V+ AE++     GL A++    GDMR+ALN LQ+T      + +E V+     P P  
Sbjct: 184 LVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLH 243

Query: 269 IEQISFWLLNEPFS---DSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLIN 328
           ++ I   +L   F    D  K++ ++    G +  DI+  +   +    M   ++++ + 
Sbjct: 244 VKNIVRNVLESKFDIACDGLKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMK 303

Query: 329 DLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 361
           +      R+  G    LQL  L++  +  R    A
Sbjct: 304 ETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 332

[Close]
BLAST of Lsi08G004470 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-51
Identity = 123/329 (37.39%), Postives = 188/329 (57.14%), Query Frame = 0 

Query: 41  PWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGT 100
           PWVEK+RPK + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 101 N-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKA-----SVKLVLLDEADAMTK 160
             Y + +LELNASDDRGI+VVR +I+DFA+    S   ++     S K+++LDEAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 161 DAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEA 220
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC +FRF PL    ++ R+ ++   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 221 ERLDVTESGLAALVRLCSGDMRKALNILQS-THMASQHITEEAVYLCTGNPMPKDIEQIS 280
           E L +    L+ L  +  GD+R+A+  LQS T +    IT   +   +G    + + ++ 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 281 FWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDI----RVQLINDLAD 340
               +  F  + K +  I   +G     I+ +  LF    +  SDI    + ++   LA+
Sbjct: 250 TACKSGDFDIANKEVDNI-VAEGYPASQIINQ--LFDIVAEADSDITDMQKAKICKCLAE 309

Query: 341 IEYRMSFGCNDKLQLGSLISSFTRARSAL 359
            + R+  G ++ LQL  + SS   A S +
Sbjct: 310 TDKRLVDGADEYLQLLDVASSTICALSEM 335

[Close]
BLAST of Lsi08G004470 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-50
Identity = 122/328 (37.20%), Postives = 186/328 (56.71%), Query Frame = 0 

Query: 41  PWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGT 100
           PWVEK+RPK + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG- 69

Query: 101 NYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKA-----SVKLVLLDEADAMTKD 160
                +LELNASDDRGI+VVR +I+DFA+    S   ++     S K+++LDEAD+MT+D
Sbjct: 70  -----VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 161 AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAE 220
           AQ ALRR +E Y+K TRF  ICN++++II  L SRC +FRF PL    ++ R+ ++   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 221 RLDVTESGLAALVRLCSGDMRKALNILQS-THMASQHITEEAVYLCTGNPMPKDIEQISF 280
            L +    L+ L  +  GD+R+A+  LQS T +    IT   +   +G    + + ++  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 281 WLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDI----RVQLINDLADI 340
              +  F  + K +  I   +G     I+ +  LF    +  SDI    + ++   LA+ 
Sbjct: 250 ACKSGDFDIANKEVDNI-VAEGYPASQIINQ--LFDIVAEADSDITDMQKAKICKCLAET 309

Query: 341 EYRMSFGCNDKLQLGSLISSFTRARSAL 359
           + R+  G ++ LQL  + SS   A S +
Sbjct: 310 DKRLVDGADEYLQLLDVASSTICALSEM 328

[Close]
BLAST of Lsi08G004470 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 193.0 bits (489), Expect = 4.3e-49
Identity = 122/329 (37.08%), Postives = 186/329 (56.53%), Query Frame = 0 

Query: 41  PWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGT 100
           PWVEK+RPK + DVA   ++             PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 101 N-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKA-----SVKLVLLDEADAMTK 160
             Y + +LELNASDDRGI+VVR +I+DFA+    S   ++     S K+++LDEAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 161 DAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEA 220
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC +FRF PL    ++ R+ ++   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 221 ERLDVTESGLAALVRLCSGDMRKALNILQS-THMASQHITEEAVYLCTGNPMPKDIEQIS 280
           E L +    L+ L  +  GD+R+A+  LQS T +    IT   +   +G    + + ++ 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 281 FWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDI----RVQLINDLAD 340
               +  F  + K +  I   +G     I+ +  LF    +  SDI    + ++   LA+
Sbjct: 250 TACKSGDFDIANKEVDNI-VAEGYPASQIINQ--LFDIVAEADSDITDMQKAKICKCLAE 309

Query: 341 IEYRMSFGCNDKLQLGSLISSFTRARSAL 359
            + R+  G ++ LQL  + SS   A S +
Sbjct: 310 TDKRLVDGADEYLQLLDVASSTICALSEM 323

The following BLAST results are available for this feature:
BLAST of Lsi08G004470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CAQ88.7e-15676.61Replication factor C subunit 5 OS=Arabidopsis thaliana OX=3702 GN=RFC5 PE=1 SV=1[more]
Q6YZ541.5e-15577.35Replication factor C subunit 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC3 ... [more]
P409378.3e-10657.69Replication factor C subunit 5 OS=Homo sapiens OX=9606 GN=RFC5 PE=1 SV=1[more]
Q9D0F61.8e-10558.61Replication factor C subunit 5 OS=Mus musculus OX=10090 GN=Rfc5 PE=1 SV=1[more]
Q54ST43.4e-9957.81Probable replication factor C subunit 5 OS=Dictyostelium discoideum OX=44689 GN=... [more]
BLAST of Lsi08G004470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UJX64.0e-19697.80Replication factor C subunit 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3CRX14.0e-19697.80replication factor C subunit 5 OS=Cucumis melo OX=3656 GN=LOC103504076 PE=3 SV=1[more]
A0A0A0KDS99.9e-19596.69AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G382960 PE=3 SV... [more]
A0A6J1K1F84.1e-19395.32replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489762 ... [more]
A0A6J1FMN65.4e-19395.59replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC11144558... [more]
BLAST of Lsi08G004470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886416.11.5e-19798.35replication factor C subunit 3 [Benincasa hispida][more]
XP_008466735.18.3e-19697.80PREDICTED: replication factor C subunit 5 [Cucumis melo] >KAA0055454.1 replicati... [more]
XP_004149801.12.0e-19496.69replication factor C subunit 3 [Cucumis sativus] >KGN47708.1 hypothetical protei... [more]
XP_022993904.18.6e-19395.32replication factor C subunit 3-like [Cucurbita maxima][more]
XP_022939828.11.1e-19295.59replication factor C subunit 3-like [Cucurbita moschata][more]
BLAST of Lsi08G004470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G77470.16.2e-15776.61replication factor C subunit 3 [more]
AT1G63160.13.6e-5637.61replication factor C 2 [more]
AT1G21690.11.6e-5137.39ATPase family associated with various cellular activities (AAA) [more]
AT1G21690.42.3e-5037.20ATPase family associated with various cellular activities (AAA) [more]
AT1G21690.24.3e-4937.08ATPase family associated with various cellular activities (AAA) [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 72..202
e-value: 8.3E-12
score: 55.2
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 264..350
e-value: 3.4E-16
score: 59.5
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 76..196
e-value: 2.3E-16
score: 60.4
NoneNo IPR availableGENE3D1.10.8.60coord: 202..263
e-value: 6.4E-23
score: 81.9
NoneNo IPR availableGENE3D1.20.272.10coord: 264..361
e-value: 2.5E-30
score: 106.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR11669:SF9REPLICATION FACTOR C SUBUNIT 5coord: 36..359
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 36..359
NoneNo IPR availableCDDcd18140HLD_clamp_RFCcoord: 203..261
e-value: 1.30366E-17
score: 74.1025
NoneNo IPR availableCDDcd00009AAAcoord: 60..198
e-value: 3.95785E-23
score: 92.2091
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 35..198
e-value: 3.1E-53
score: 181.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 40..257
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 264..354

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G004470.1Lsi08G004470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005663 DNA replication factor C complex
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003689 DNA clamp loader activity