Lsi08G003670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G003670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribonuclease H
Location	chr08: 10061797 .. 10062684 (-)
RNA-Seq Expression	Lsi08G003670
Synteny	Lsi08G003670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTGGATCCGCTCAGCAGGGGCAGTCCCCCCCTCACTACATCAAAGGGTGTAAAGTTCAGCGTGGAAGGTGGTCAGGTCATTGTTTATGGGGAGGAAGACATGTTTGTCACAAAAACGTCAACACTTCCTTATATTGAAGCAGCAGAAGAAGCTTTTGGGTGCTCTTACAGATCATTTGAAGTCGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATTGGTCGTTATATGTCTCGAACATCTCTAGTGGTGGCAACAACGATGATAAGGAGTGGTTATCAAATGCACGGAGGTTTGGGAAAGTGCGATCAAAGAAACCCAGAGGTGATTTCTCTTCCTAAGGCTAAGGAAAAGTTTGGATTAGGGTATAAGTCAACAACTTCTAAATGGGAGAAGGTTCAGGCAGAGAAGAAGAAAAAAAAGAAGTGCATGCCTCGAAGGACTTGAGGTCGAACAAGGTAGAATGCATATACCACACTTATCTGAGACTTTCAAACCAGGGGAATTACTTTTCAATGACAAGCAGTCGAGGGAATGCATCAAAGAGTTCAAAGCCTCAGTAGCTGTTATCTCTAAAAACACTCATTCATCTTGTCAATTGGTTCATCTTTGTCCACTGAAATTTGAGTTGAGCAACTGAAGGTCGAGAAGATGTCAAGCATCACTAAAGTATTACCAAAGGACGCTGGGGACGAAAACTACATCGATGAAATTGTTGATTTCGAAGTTCCAATCTGTAATCTCGAGCAAAATATGGAAGAAGAATGCGATATATCACCCGAGTTACTAAGGATGATTGAGCAAGAAGAAAAGAAGACTGTGCCATACCAAGAACCTTTGGAAGTTGTTAATCTGGGGACACTAGAAGAGGCGAGAGAA

mRNA sequence

ATGACCTTGGATCCGCTCAGCAGGGGCAGTCCCCCCCTCACTACATCAAAGGGTGTAAAGTTCAGCGTGGAAGGTGGTCAGGTCATTGTTTATGGGGAGGAAGACATGTTTGTCACAAAAACGTCAACACTTCCTTATATTGAAGCAGCAGAAGAAGCTTTTGGGTGCTCTTACAGATCATTTGAAGTCGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATTGGTCGTTATATGTCTCGAACATCTCTAGTGGTGGCAACAACGATGATAAGGAGTGGTTATCAAATGCACGGAGGTTTGGGAAAGTGCGATCAAAGAAACCCAGAGGTGATTTCTCTTCCTAAGGCTAAGGAAAAGTTTGGATTAGGGTATAAGTCAACAACTTCTAAATGGGAGAAGAGAAGAAGAAAAAAAAGAAGTGCATGCCTCGAAGGACTTGAGGTCGAACAAGGTAGAATGCATATACCACACTTATCTGAGACTTTCAAACCAGGGGAATTACTTTTCAATGACAAGCAGTCGAGGGAATGCATCAAAGAGTTCAAAGCCTCAGTAGCTGTTATCTCTAAAAACACTCATTCATCTTGTCAATTGGTCGAGAAGATGTCAAGCATCACTAAAGTATTACCAAAGGACGCTGGGGACGAAAACTACATCGATGAAATTGTTGATTTCGAAGTTCCAATCTGTAATCTCGAGCAAAATATGGAAGAAGAATGCGATATATCACCCGAGTTACTAAGGATGATTGAGCAAGAAGAAAAGAAGACTGTGCCATACCAAGAACCTTTGGAAGTTGTTAATCTGGGGACACTAGAAGAGGCGAGAGAA

Coding sequence (CDS)

ATGACCTTGGATCCGCTCAGCAGGGGCAGTCCCCCCCTCACTACATCAAAGGGTGTAAAGTTCAGCGTGGAAGGTGGTCAGGTCATTGTTTATGGGGAGGAAGACATGTTTGTCACAAAAACGTCAACACTTCCTTATATTGAAGCAGCAGAAGAAGCTTTTGGGTGCTCTTACAGATCATTTGAAGTCGCTAATGCTACTATCTTTCCAACTGAAGGTTTGGATATTGGTCGTTATATGTCTCGAACATCTCTAGTGGTGGCAACAACGATGATAAGGAGTGGTTATCAAATGCACGGAGGTTTGGGAAAGTGCGATCAAAGAAACCCAGAGGTGATTTCTCTTCCTAAGGCTAAGGAAAAGTTTGGATTAGGGTATAAGTCAACAACTTCTAAATGGGAGAAGAGAAGAAGAAAAAAAAGAAGTGCATGCCTCGAAGGACTTGAGGTCGAACAAGGTAGAATGCATATACCACACTTATCTGAGACTTTCAAACCAGGGGAATTACTTTTCAATGACAAGCAGTCGAGGGAATGCATCAAAGAGTTCAAAGCCTCAGTAGCTGTTATCTCTAAAAACACTCATTCATCTTGTCAATTGGTCGAGAAGATGTCAAGCATCACTAAAGTATTACCAAAGGACGCTGGGGACGAAAACTACATCGATGAAATTGTTGATTTCGAAGTTCCAATCTGTAATCTCGAGCAAAATATGGAAGAAGAATGCGATATATCACCCGAGTTACTAAGGATGATTGAGCAAGAAGAAAAGAAGACTGTGCCATACCAAGAACCTTTGGAAGTTGTTAATCTGGGGACACTAGAAGAGGCGAGAGAA

Protein sequence

MTLDPLSRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNMEEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

Homology

[Close]

BLAST of Lsi08G003670 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 170/291 (58.42%), Postives = 211/291 (72.51%), Query Frame = 0


Query: 7    SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANA 66
            S G+ P +  + +KFSVEGGQ IVYGEEDMFVTKTS LPY+EA EEA  CSYRSFE ANA
Sbjct: 1374 SAGAVPSSLHQRLKFSVEGGQAIVYGEEDMFVTKTSVLPYVEATEEALECSYRSFEFANA 1433

Query: 67   TIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGY 126
            TIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +Q + EVISLPKAKEKFGLGY
Sbjct: 1434 TIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGY 1493

Query: 127  KSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEF 186
            K  TS+ EK   ++++KRSA L G E+++ R+ IPHLSETFK GELLF+  Q +   ++ 
Sbjct: 1494 KPVTSECEKVRAKKKEKRSALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDS 1553

Query: 187  KASVAVISKNTHSSCQLV--------------EKMSSITKVLPKDAGDENYIDEIVDFEV 246
            +  +AV+S+NT     LV              +K   +TK   K+   E  +D+ VDFEV
Sbjct: 1554 EILIAVVSENTSLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQKNTRVEGDVDDAVDFEV 1613

Query: 247  PICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
            PICNLEQN+ E E DISPELLR+IEQEEKKT+ YQE L V+N GT EE +E
Sbjct: 1614 PICNLEQNIGEGESDISPELLRLIEQEEKKTMSYQETLNVINSGTPEEVKE 1664

[Close]

BLAST of Lsi08G003670 vs. ExPASy TrEMBL
Match: A0A5A7TI68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00990 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 9.0e-79
Identity = 165/291 (56.70%), Postives = 212/291 (72.85%), Query Frame = 0


Query: 7   SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANA 66
           S G+ P    + +KFSVEGGQ IVYGE++MFVTK STLPY+EA EEA  CSYRSFE+ANA
Sbjct: 288 SAGAVPSLLHQRLKFSVEGGQAIVYGEDNMFVTKISTLPYVEATEEALECSYRSFEIANA 347

Query: 67  TIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGY 126
           TIFP EGL + RY+S+TSL++A TMI+S +QMH GLGK +Q + +VISLPKAKEKFGLGY
Sbjct: 348 TIFPIEGLSMDRYVSKTSLMIAKTMIKSCFQMHKGLGKDNQGDSKVISLPKAKEKFGLGY 407

Query: 127 KSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEF 186
           K   S+WEK   ++++KRS  L G E+++ R+ IPHL ETFKP ELLF+  Q +   ++ 
Sbjct: 408 KPAASEWEKVRAKKKEKRSTLLVGCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDS 467

Query: 187 KASVAVISKNTHSSCQLV--------------EKMSSITKVLPKDAGDENYIDEIVDFEV 246
           + S+AV+S+NT  S  LV              +K   +TK   K    E  +D++VDF+V
Sbjct: 468 EISIAVVSENTSLSHPLVHQCPPGFELNNWEIKKTLEVTKGSQKSTRVEGDVDDVVDFKV 527

Query: 247 PICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
           PICNLEQN+E  E DISPELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Sbjct: 528 PICNLEQNIEVGEFDISPELLRLIEQEEKKTMLYQETLKVINLGTLKEVKE 578

[Close]

BLAST of Lsi08G003670 vs. ExPASy TrEMBL
Match: A0A5D3C587 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00280 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 147/274 (53.65%), Postives = 185/274 (67.52%), Query Frame = 0


Query: 7   SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANA 66
           S G+ P    + +KFSVEGGQ IVYGE++MFVTKTSTLPY+EA EEA  CSYRSFE+ANA
Sbjct: 667 SAGTVPSLLHQRLKFSVEGGQAIVYGEDNMFVTKTSTLPYVEATEEALECSYRSFEIANA 726

Query: 67  TIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGY 126
           TIFP EGL + RY+S+TSL++  TMI+S +QMH GLGK +QR+ +VISLPKAKEKFGLGY
Sbjct: 727 TIFPIEGLSMDRYVSKTSLMIGKTMIKSCFQMHKGLGKDNQRDSKVISLPKAKEKFGLGY 786

Query: 127 KSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKAS 186
           K   S+WEKR+R+           E   + I  +SE       L +     +C+  F+ +
Sbjct: 787 KPAASEWEKRKRRN----------EDSEISIAVVSENTSLSHPLVH-----QCLPGFELN 846

Query: 187 VAVISKNTHSSCQLVEKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDIS 246
              I K              +TK   K    E  +D+IVDF+VPICNLEQN+E  E DIS
Sbjct: 847 NWEIKKTL-----------EVTKGSQKSTRVEGDVDDIVDFKVPICNLEQNIEVGESDIS 906

Query: 247 PELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
           PELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Sbjct: 907 PELLRLIEQEEKKTMLYQETLKVINLGTLKEVKE 914

[Close]

BLAST of Lsi08G003670 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 144/247 (58.30%), Postives = 175/247 (70.85%), Query Frame = 0


Query: 55   GCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVIS 114
            GCSYRSFE+ANATIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +Q + EVIS
Sbjct: 933  GCSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGDSEVIS 992

Query: 115  LPKAKEKFGLGYKSTTSKWEKRRRK---KRSACLEGLEVEQGRMHIPHLSETFKPGELLF 174
            LPKAKEKFGLGYK  TS+WEK R K   KRSA L G E+++ R+ IPHLSETFK GELLF
Sbjct: 993  LPKAKEKFGLGYKPVTSEWEKVRAKNKEKRSALLMGCEMKEERISIPHLSETFKLGELLF 1052

Query: 175  NDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS--------SITKVLPKDAGD------ 234
            +  Q +   ++ + S+ V+S+NT     LV K           I K L    G       
Sbjct: 1053 DTHQRKRHNEDSEISIEVVSENTSLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQKIHNR 1112

Query: 235  ----ENYIDEIVDFEVPICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLG 280
                E  +D+ VDFEVPICNLEQN+ E E DISPELLR+IEQEEKKT+PYQE L+V+NLG
Sbjct: 1113 NTRVEGDVDDTVDFEVPICNLEQNIGEGESDISPELLRLIEQEEKKTMPYQETLKVINLG 1172

[Close]

BLAST of Lsi08G003670 vs. ExPASy TrEMBL
Match: A0A5A7UA36 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00210 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 4.9e-61
Identity = 148/284 (52.11%), Postives = 180/284 (63.38%), Query Frame = 0


Query: 12  PLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPT 71
           P +  + +KFSVEGGQ IVY EEDMFVTKTSTLPY+EA EEA  CSYRSFE+ANATIFPT
Sbjct: 157 PSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPT 216

Query: 72  EGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGYKSTTS 131
                                             +Q + EVISL KAKEKFGLGYK   S
Sbjct: 217 GD--------------------------------NQGDSEVISLSKAKEKFGLGYKPIAS 276

Query: 132 KWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVA 191
           +WEK   ++++KRSA L G E+++ R+ IPHLSETFKP ELLF+  Q +    + + S+ 
Sbjct: 277 EWEKVRTKKKEKRSALLVGREMKEERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIV 336

Query: 192 VISKNTHSSCQLVEKMS--------SITKVLPKDAGD----ENYIDEIVDFEVPICNLEQ 251
           V+S+NT     LV +           I K L    G     E  +D+ VDFEVPICNLEQ
Sbjct: 337 VVSENTILPHPLVHQCPPGFELNNWEIKKTLEVTKGSSTRVEGDVDDAVDFEVPICNLEQ 396

Query: 252 NMEE-ECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
           N+EE E DISPEL R+IEQEEKKT+PYQE L+V+NLGTLEE +E
Sbjct: 397 NIEEGESDISPELRRLIEQEEKKTMPYQETLKVINLGTLEEVKE 408

[Close]

BLAST of Lsi08G003670 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 2.2e-79
Identity = 170/291 (58.42%), Postives = 211/291 (72.51%), Query Frame = 0


Query: 7    SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANA 66
            S G+ P +  + +KFSVEGGQ IVYGEEDMFVTKTS LPY+EA EEA  CSYRSFE ANA
Sbjct: 1374 SAGAVPSSLHQRLKFSVEGGQAIVYGEEDMFVTKTSVLPYVEATEEALECSYRSFEFANA 1433

Query: 67   TIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGY 126
            TIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +Q + EVISLPKAKEKFGLGY
Sbjct: 1434 TIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGY 1493

Query: 127  KSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEF 186
            K  TS+ EK   ++++KRSA L G E+++ R+ IPHLSETFK GELLF+  Q +   ++ 
Sbjct: 1494 KPVTSECEKVRAKKKEKRSALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDS 1553

Query: 187  KASVAVISKNTHSSCQLV--------------EKMSSITKVLPKDAGDENYIDEIVDFEV 246
            +  +AV+S+NT     LV              +K   +TK   K+   E  +D+ VDFEV
Sbjct: 1554 EILIAVVSENTSLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQKNTRVEGDVDDAVDFEV 1613

Query: 247  PICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
            PICNLEQN+ E E DISPELLR+IEQEEKKT+ YQE L V+N GT EE +E
Sbjct: 1614 PICNLEQNIGEGESDISPELLRLIEQEEKKTMSYQETLNVINSGTPEEVKE 1664

[Close]

BLAST of Lsi08G003670 vs. NCBI nr
Match: KAA0043020.1 (uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-78
Identity = 165/291 (56.70%), Postives = 212/291 (72.85%), Query Frame = 0


Query: 7   SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANA 66
           S G+ P    + +KFSVEGGQ IVYGE++MFVTK STLPY+EA EEA  CSYRSFE+ANA
Sbjct: 288 SAGAVPSLLHQRLKFSVEGGQAIVYGEDNMFVTKISTLPYVEATEEALECSYRSFEIANA 347

Query: 67  TIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGY 126
           TIFP EGL + RY+S+TSL++A TMI+S +QMH GLGK +Q + +VISLPKAKEKFGLGY
Sbjct: 348 TIFPIEGLSMDRYVSKTSLMIAKTMIKSCFQMHKGLGKDNQGDSKVISLPKAKEKFGLGY 407

Query: 127 KSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEF 186
           K   S+WEK   ++++KRS  L G E+++ R+ IPHL ETFKP ELLF+  Q +   ++ 
Sbjct: 408 KPAASEWEKVRAKKKEKRSTLLVGCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDS 467

Query: 187 KASVAVISKNTHSSCQLV--------------EKMSSITKVLPKDAGDENYIDEIVDFEV 246
           + S+AV+S+NT  S  LV              +K   +TK   K    E  +D++VDF+V
Sbjct: 468 EISIAVVSENTSLSHPLVHQCPPGFELNNWEIKKTLEVTKGSQKSTRVEGDVDDVVDFKV 527

Query: 247 PICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
           PICNLEQN+E  E DISPELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Sbjct: 528 PICNLEQNIEVGEFDISPELLRLIEQEEKKTMLYQETLKVINLGTLKEVKE 578

[Close]

BLAST of Lsi08G003670 vs. NCBI nr
Match: TYK06500.1 (uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 4.0e-65
Identity = 147/274 (53.65%), Postives = 185/274 (67.52%), Query Frame = 0


Query: 7   SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANA 66
           S G+ P    + +KFSVEGGQ IVYGE++MFVTKTSTLPY+EA EEA  CSYRSFE+ANA
Sbjct: 667 SAGTVPSLLHQRLKFSVEGGQAIVYGEDNMFVTKTSTLPYVEATEEALECSYRSFEIANA 726

Query: 67  TIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGY 126
           TIFP EGL + RY+S+TSL++  TMI+S +QMH GLGK +QR+ +VISLPKAKEKFGLGY
Sbjct: 727 TIFPIEGLSMDRYVSKTSLMIGKTMIKSCFQMHKGLGKDNQRDSKVISLPKAKEKFGLGY 786

Query: 127 KSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKAS 186
           K   S+WEKR+R+           E   + I  +SE       L +     +C+  F+ +
Sbjct: 787 KPAASEWEKRKRRN----------EDSEISIAVVSENTSLSHPLVH-----QCLPGFELN 846

Query: 187 VAVISKNTHSSCQLVEKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDIS 246
              I K              +TK   K    E  +D+IVDF+VPICNLEQN+E  E DIS
Sbjct: 847 NWEIKKTL-----------EVTKGSQKSTRVEGDVDDIVDFKVPICNLEQNIEVGESDIS 906

Query: 247 PELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
           PELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Sbjct: 907 PELLRLIEQEEKKTMLYQETLKVINLGTLKEVKE 914

[Close]

BLAST of Lsi08G003670 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-63
Identity = 144/247 (58.30%), Postives = 175/247 (70.85%), Query Frame = 0


Query: 55   GCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVIS 114
            GCSYRSFE+ANATIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +Q + EVIS
Sbjct: 933  GCSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGDSEVIS 992

Query: 115  LPKAKEKFGLGYKSTTSKWEKRRRK---KRSACLEGLEVEQGRMHIPHLSETFKPGELLF 174
            LPKAKEKFGLGYK  TS+WEK R K   KRSA L G E+++ R+ IPHLSETFK GELLF
Sbjct: 993  LPKAKEKFGLGYKPVTSEWEKVRAKNKEKRSALLMGCEMKEERISIPHLSETFKLGELLF 1052

Query: 175  NDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS--------SITKVLPKDAGD------ 234
            +  Q +   ++ + S+ V+S+NT     LV K           I K L    G       
Sbjct: 1053 DTHQRKRHNEDSEISIEVVSENTSLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQKIHNR 1112

Query: 235  ----ENYIDEIVDFEVPICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLG 280
                E  +D+ VDFEVPICNLEQN+ E E DISPELLR+IEQEEKKT+PYQE L+V+NLG
Sbjct: 1113 NTRVEGDVDDTVDFEVPICNLEQNIGEGESDISPELLRLIEQEEKKTMPYQETLKVINLG 1172

[Close]

BLAST of Lsi08G003670 vs. NCBI nr
Match: KAA0052108.1 (uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa] >TYJ98088.1 uncharacterized protein E5676_scaffold565G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-60
Identity = 148/284 (52.11%), Postives = 180/284 (63.38%), Query Frame = 0


Query: 12  PLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPT 71
           P +  + +KFSVEGGQ IVY EEDMFVTKTSTLPY+EA EEA  CSYRSFE+ANATIFPT
Sbjct: 157 PSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPT 216

Query: 72  EGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGYKSTTS 131
                                             +Q + EVISL KAKEKFGLGYK   S
Sbjct: 217 GD--------------------------------NQGDSEVISLSKAKEKFGLGYKPIAS 276

Query: 132 KWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVA 191
           +WEK   ++++KRSA L G E+++ R+ IPHLSETFKP ELLF+  Q +    + + S+ 
Sbjct: 277 EWEKVRTKKKEKRSALLVGREMKEERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIV 336

Query: 192 VISKNTHSSCQLVEKMS--------SITKVLPKDAGD----ENYIDEIVDFEVPICNLEQ 251
           V+S+NT     LV +           I K L    G     E  +D+ VDFEVPICNLEQ
Sbjct: 337 VVSENTILPHPLVHQCPPGFELNNWEIKKTLEVTKGSSTRVEGDVDDAVDFEVPICNLEQ 396

Query: 252 NMEE-ECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE 280
           N+EE E DISPEL R+IEQEEKKT+PYQE L+V+NLGTLEE +E
Sbjct: 397 NIEEGESDISPELRRLIEQEEKKTMPYQETLKVINLGTLEEVKE 408

The following BLAST results are available for this feature:

BLAST of Lsi08G003670 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G003670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUT0	1.1e-79	58.42	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7TI68	9.0e-79	56.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C587	1.9e-65	53.65	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VAU5	1.1e-63	58.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UA36	4.9e-61	52.11	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Lsi08G003670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033221.1	2.2e-79	58.42	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
KAA0043020.1	1.9e-78	56.70	uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]	[more]
TYK06500.1	4.0e-65	53.65	uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa]	[more]
KAA0065293.1	2.2e-63	58.30	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
KAA0052108.1	1.0e-60	52.11	uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa] >TYJ9...	[more]

BLAST of Lsi08G003670 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 19..279
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 19..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G003670.1	Lsi08G003670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity