Lsi08G003120 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G003120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Epimerase domain-containing protein
Location	chr08: 8204943 .. 8207896 (+)
RNA-Seq Expression	Lsi08G003120
Synteny	Lsi08G003120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTACCAGTTCCATTTGGGCCAAGGATTTGGCATATTTTCAAAATCTGATAACATAATGGATTTCTGATTTTCTCTTGTTTAAACAACCATTCTAGCGATGATCTGTGAATCCTTGAAGAATGCATATCCCATTCACTTTCAGTCACCAATTGGAACAGTATTCTCTCGGCTTCTGAACTGTAGGAAGTGTGGCGACTAGCATCAGCAACAGACCTACAAAACCCATATATATTCACCAGTTGTGTGACTGTAAATGGGTCATAGGATCCAGATAGTAAGCCACTTTTGCTGACAAGAATATACTGTTCCAGAGATGCTAAAACCATCTTCTCATCAGCAAGTCTGGCAAACAGGTATTCATGTGGTGAGTACATAGGCAACATATATATACCAAATAGAGGATATAAGAAAGAAGAAACAAACGTGTGAAGAAACAAAAGAGTGTTACCTATCATCATGTAATGAACTTGCATATAGTAACAGCAAAACGGCAGACTGACAAGAAGAGAGCTCCAAGTCATTGGAGCTTTTCTGTCCGAGTAGAAACAGTAAATCAACTGGATCAGATGGCAGAAACGATATAGCTTCTCTAATGCATTGTCCAGAATCAATTCCGAAGACGACATCCACCAGAGAACTGAGCATTAGATACACTCTCCATTTCAGCTTTTCAGAAGGAAATGAGCCTAGACATCTAAAAGAGAAACTGAACCAACAAGCAGATAGAAGTGTGTTTGCAAAATCTATGGTCCTGATGTCGGGATCTTGGAGCAAAATCGAATGTAAAGTTTCCAATACCCCCAAGACAAGTTCCTCTTCAATTACATTGATAGTTGCTAAAAGCCAAGGTAGTAAATGTGTTGTACATACATCAAGAGCACAGTTTTTCATTTCTTTGGCGACGGAGTCATCCATGACAATATTGACTTGACTATATACATAGAACTCCTTGAGAAGGTATAAAGAATGTAAAAATTGAGTTGGTTGTGTTTCAAATGTACTGAGACAAAATAAAACTACATGTTCTAATACTTCTTGAACTGATGTTGCTAGATGTGGCACCCTATGAGATGGAGACTTCATAATCGTGACCAAGATTGTGCAGGTTGTTGCAAATGCGTCTGGATGTATGCCCATCTCCCCAGTCACATTCTTACGGAGCATACTCGTCAAATTAAGAACTAGTTCTTCAATGTGAGATACAGCCACTACTCCTGGACACTGAGAAATGCATTTCAAAATGAGACCAAGTGTTTGGGTGTGAACTGGATGGAAAGGAACTTCAGCAACATGACGCAGCACTGGAATTAGTGTTGCAAATCCAACCGCAAGCCTTTGATTGAAGGGCACTTCAGCTCTTGAAAGAAGATCAAGGGCCTGAAGACAAGCCCTTGCCAAGGGATCCTTACCTTCTGCAATGTTCAACTCATTTCATTACCCTAGAATTTTAAGTTTCTGACATATGTTCTATTTTGAAAAATGAATGTGTAATTTTCATGTATTTAACAACACAAAAATAGCTGGATATCTTTATCTTTGATAGATTATGCTTGTTCAAGATTTTCAGGACTACGATTGCTCACCTGAAAATCGTAATATCTCAAATACATAATCCACTATATTTTCTTCGACCAATAGTTGGATCGGCTTGATGGAAGTGCCTTCTGAGGACAAATAACGAACTATTAGCTCCAGAGTGCTAAGTTGGAGCTCCATGTCTGACGAAAGCAGAGGACCTTTGATAGCCTCAGCAAACAATATATTCAAAGGGAGATCATCTGGTTCCTTCTCGTTAAACTTTGAATGGTATTCATGTTCACTCCCCAAGAGCCCCCTTTGAGCCAGAACAGTTAGAAGTGCTACAGAAACAAATCAATACACATCAGATAAGAGAAGATGAGAATTGAGAAACTTAGCTTCATCTGTATGCAAATGCAAACATTCAAAAATATCACCCAAACTCATGCACCACCAGCTACAAATTATAAAGCAGAAAGAAGGTTTAGCGTAATACACACTAAAAAAAGCTTCAGCTCATAAGCCTTATTACATTGGCACATGCATGTTAAGTCTAGGAAACACAAAAAAAGTGATTATAAAGAAGTTGACAAACCTACACAATTCAATCTGACATCATCATTTTGAGTCTTCATGAGCGCCTCCAGAGATAAGTACAGAAGTTTTGGGCAAAATGCAGAGAGAACATCAATTTCAGTGCTATGGTTAGATGCATATTGAATTGTGGATAATTTGTATAGAACAAAGAGGATCTCTCCCCGTATCTCCTCGCTGCATATGAAGATTAATTCAGAACTTGTCGTAAAATGCATTTGCCTCTTTCGAATTATTCAGTTTATCACCTTGGTAATTCAAGGCCTGCCACGAGATTTGATACGATGCCATCGTTGTTCTTAATTTGGGCATGGAAATTTTTCGCCCGATAGTTTAAAAGCATTCCGTAACAATGAAGCTACAAGGAACAAATAAAAAACTCTCACTCTTTTGGCAACGAAATACACAGCAATCTATAACAGTAGAACAAACAAGATTACCATATACACTTGACGGCGGCTCCAAGCCAAGGCGCCAGAAGAAAGCCGATCCGAAACTCTGGCGATAAAGTCGTCGCAAAGAGATCCATCGCCGTCAACTTCAGTGACGTCACAGAGGTGGCGAACAAGATCAGTGAGTTGGCGAGCAATCGGGTGGTCGTCGAAGGAGCAGAGTGCGGTGACGAAGGGAGCGACAATGAAGTGAGAATGAAAAGTGAGGAAGGTGCGGAGGAATGGCGGCTGAGAAAGAGCCTGGGAGAACTGGGAGAGTGCATAGGAGACGTGAACTGTGGGAGAGAGGGGATCGGAGATGAGGTTGGAGAAGCAGAGAAGGCAAATCGTTCCTCCTTCCTGCGTGTGGAGGCAGAGCGACGATGGGTGGCCATGGGAGCATGA

mRNA sequence

ATGATGGATCCAGATAGTAAGCCACTTTTGCTGACAAGAATATACTGTTCCAGAGATGCTAAAACCATCTTCTCATCAGCAAGTCTGGCAAACAGAAACAGTAAATCAACTGGATCAGATGGCAGAAACGATATAGCTTCTCTAATGCATTGTCCAGAATCAATTCCGAAGACGACATCCACCAGAGAACTGAGCATTAGATACACTCTCCATTTCAGCTTTTCAGAAGGAAATGAGCCTAGACATCTAAAAGAGAAACTGAACCAACAAGCAGATAGAAGTGTGTTTGCAAAATCTATGGTCCTGATGTCGGGATCTTGGAGCAAAATCGAATGTAAAGTTTCCAATACCCCCAAGACAAGTTCCTCTTCAATTACATTGATAGTTGCTAAAAGCCAAGTTTTTCATTTCTTTGGCGACGGAGTCATCCATGACAATATTGACTTGACTATATACATAGAACTCCTTGAGAAGGTTGTTGCAAATGCGTCTGGATGTATGCCCATCTCCCCAGTCACATTCTTACGGAGCATACTCGTCAAATTAAGAACTAGTTCTTCAATAACAAAGAGGATCTCTCCCCGTATCTCCTCGCTGCATATGAAGATTAATTCAGAACTTGTCGTAAAATGCATTTGCCTCTTTCGAATTATTCAGTTTATCACCTTGAACAAACAAGATTACCATATACACTTGACGGCGGCTCCAAGCCAAGGCGCCAGAAGAAAGCCGATCCGAAACTCTGGCGATAAAGTCGTCGCAAAGAGATCCATCGCCGTCAACTTCAGTGACGTCACAGAGGTGGCGAACAAGATCAGTGAGTTGGCGAGCAATCGGGTGGTCGTCGAAGGAGCAGAGTGCGGTGACGAAGGGAGCGACAATGAAGTGAGAATGAAAAGTGAGGAAGGTGCGGAGGAATGGCGGCTGAGAAAGAGCCTGGGAGAACTGGGAGAGTGCATAGGAGACGTGAACTGTGGGAGAGAGGGGATCGGAGATGAGGTTGGAGAAGCAGAGAAGGCAAATCGTTCCTCCTTCCTGCGTGTGGAGGCAGAGCGACGATGGGTGGCCATGGGAGCATGA

Coding sequence (CDS)

ATGATGGATCCAGATAGTAAGCCACTTTTGCTGACAAGAATATACTGTTCCAGAGATGCTAAAACCATCTTCTCATCAGCAAGTCTGGCAAACAGAAACAGTAAATCAACTGGATCAGATGGCAGAAACGATATAGCTTCTCTAATGCATTGTCCAGAATCAATTCCGAAGACGACATCCACCAGAGAACTGAGCATTAGATACACTCTCCATTTCAGCTTTTCAGAAGGAAATGAGCCTAGACATCTAAAAGAGAAACTGAACCAACAAGCAGATAGAAGTGTGTTTGCAAAATCTATGGTCCTGATGTCGGGATCTTGGAGCAAAATCGAATGTAAAGTTTCCAATACCCCCAAGACAAGTTCCTCTTCAATTACATTGATAGTTGCTAAAAGCCAAGTTTTTCATTTCTTTGGCGACGGAGTCATCCATGACAATATTGACTTGACTATATACATAGAACTCCTTGAGAAGGTTGTTGCAAATGCGTCTGGATGTATGCCCATCTCCCCAGTCACATTCTTACGGAGCATACTCGTCAAATTAAGAACTAGTTCTTCAATAACAAAGAGGATCTCTCCCCGTATCTCCTCGCTGCATATGAAGATTAATTCAGAACTTGTCGTAAAATGCATTTGCCTCTTTCGAATTATTCAGTTTATCACCTTGAACAAACAAGATTACCATATACACTTGACGGCGGCTCCAAGCCAAGGCGCCAGAAGAAAGCCGATCCGAAACTCTGGCGATAAAGTCGTCGCAAAGAGATCCATCGCCGTCAACTTCAGTGACGTCACAGAGGTGGCGAACAAGATCAGTGAGTTGGCGAGCAATCGGGTGGTCGTCGAAGGAGCAGAGTGCGGTGACGAAGGGAGCGACAATGAAGTGAGAATGAAAAGTGAGGAAGGTGCGGAGGAATGGCGGCTGAGAAAGAGCCTGGGAGAACTGGGAGAGTGCATAGGAGACGTGAACTGTGGGAGAGAGGGGATCGGAGATGAGGTTGGAGAAGCAGAGAAGGCAAATCGTTCCTCCTTCCTGCGTGTGGAGGCAGAGCGACGATGGGTGGCCATGGGAGCATGA

Protein sequence

MMDPDSKPLLLTRIYCSRDAKTIFSSASLANRNSKSTGSDGRNDIASLMHCPESIPKTTSTRELSIRYTLHFSFSEGNEPRHLKEKLNQQADRSVFAKSMVLMSGSWSKIECKVSNTPKTSSSSITLIVAKSQVFHFFGDGVIHDNIDLTIYIELLEKVVANASGCMPISPVTFLRSILVKLRTSSSITKRISPRISSLHMKINSELVVKCICLFRIIQFITLNKQDYHIHLTAAPSQGARRKPIRNSGDKVVAKRSIAVNFSDVTEVANKISELASNRVVVEGAECGDEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCGREGIGDEVGEAEKANRSSFLRVEAERRWVAMGA

Homology

[Close]

BLAST of Lsi08G003120 vs. ExPASy TrEMBL
Match: A0A2P5C3T5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_186740 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-17
Identity = 63/131 (48.09%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 229 HIHLTAAPSQGARRKPIRNSGDKVVAKRSIAVNFSDVTEVANKISELASNRVVVEGAECG 288
           H HLTAAPSQG  R+PIRN  D+    R          E  ++I +LA +  VVEG E G
Sbjct: 1   HEHLTAAPSQGTGREPIRNPSDEASMNRGGI--GGGAAESGDEIGDLAGDGGVVEGGEDG 60

Query: 289 DEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCGREGIGDEVGEAEKANRSSFLRV 348
           DE  D E R++ EEGAEE  L +  GEL E +GDV      +GDEVGEAE+AN ++ L V
Sbjct: 61  DERGDKEERVEGEEGAEEGGLGEGDGELRESVGDVESRGVRVGDEVGEAEEANGAALLGV 120

Query: 349 EAERRWVAMGA 360
           E +R  VA+ A
Sbjct: 121 EDQRGPVALRA 129

[Close]

BLAST of Lsi08G003120 vs. ExPASy TrEMBL
Match: A0A4V3WKS8 (Epimerase domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_002573 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-05
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 289 DEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCGREGIGDEVGEAEKANRSSF 346
           D+G D EVR+K EE ++E RLR  + EL E +GD++C R  +GDE+GE E+A+R++F
Sbjct: 301 DKGKDEEVRVKPEEVSKERRLRDGMRELRESVGDMDCRRLMVGDEIGEVEQADRTAF 357

[Close]

BLAST of Lsi08G003120 vs. ExPASy TrEMBL
Match: A0A2P5FCN1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_086720 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-04
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 267 EVANKISELASNRVVVEGAECGDEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCG 326
           E  ++I +LA +  VVEG E GDE  D E R++ EEGAEE  L +  GEL E +GDV   
Sbjct: 12  ESGDEIGDLAGDGGVVEGGESGDERGDEEERVEGEEGAEEGGLGEGDGELRESVGDVESR 71

Query: 327 REGIGDEV 335
              +GDEV
Sbjct: 72  GVRVGDEV 79

[Close]

BLAST of Lsi08G003120 vs. NCBI nr
Match: PON55722.1 (hypothetical protein PanWU01x14_186740, partial [Parasponia andersonii])

HSP 1 Score: 99.4 bits (246), Expect = 6.8e-17
Identity = 63/131 (48.09%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 229 HIHLTAAPSQGARRKPIRNSGDKVVAKRSIAVNFSDVTEVANKISELASNRVVVEGAECG 288
           H HLTAAPSQG  R+PIRN  D+    R          E  ++I +LA +  VVEG E G
Sbjct: 1   HEHLTAAPSQGTGREPIRNPSDEASMNRGGI--GGGAAESGDEIGDLAGDGGVVEGGEDG 60

Query: 289 DEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCGREGIGDEVGEAEKANRSSFLRV 348
           DE  D E R++ EEGAEE  L +  GEL E +GDV      +GDEVGEAE+AN ++ L V
Sbjct: 61  DERGDKEERVEGEEGAEEGGLGEGDGELRESVGDVESRGVRVGDEVGEAEEANGAALLGV 120

Query: 349 EAERRWVAMGA 360
           E +R  VA+ A
Sbjct: 121 EDQRGPVALRA 129

[Close]

BLAST of Lsi08G003120 vs. NCBI nr
Match: KAG4920821.1 (hypothetical protein JHK86_049634 [Glycine max])

HSP 1 Score: 62.4 bits (150), Expect = 9.2e-06
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 274 ELASNRVVVEGAECGDEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCGREGIGDE 333
           EL+S+R VVEG E   E  D+EVR++SE+G +E R R+   ELGE +GD++   E +GD 
Sbjct: 3   ELSSDRFVVEGGEGDKEMEDDEVRVESEKGLKEVRDREGAKELGESVGDIDDWGERVGDM 62

Query: 334 VGEAEKANRSSFL 347
           VGEA +A  S+ +
Sbjct: 63  VGEAPEAEGSTVM 75

[Close]

BLAST of Lsi08G003120 vs. NCBI nr
Match: KAG4935460.1 (hypothetical protein JHK85_050379 [Glycine max] >KAG5090984.1 hypothetical protein JHK82_049762 [Glycine max] >KAG5094077.1 hypothetical protein JHK84_049665 [Glycine max])

HSP 1 Score: 62.4 bits (150), Expect = 9.2e-06
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 274 ELASNRVVVEGAECGDEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCGREGIGDE 333
           EL+S+R VVEG E   E  D+EVR++SE+G +E R R+   ELGE +GD++   E +GD 
Sbjct: 3   ELSSDRFVVEGGEGDKEMEDDEVRVESEKGLKEVRDREGAKELGESVGDIDDWGERVGDM 62

Query: 334 VGEAEKANRSSFL 347
           VGEA +A  S+ +
Sbjct: 63  VGEAPEAEGSTVM 75

[Close]

BLAST of Lsi08G003120 vs. NCBI nr
Match: THG02007.1 (hypothetical protein TEA_002573 [Camellia sinensis var. sinensis])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-05
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 289 DEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCGREGIGDEVGEAEKANRSSF 346
           D+G D EVR+K EE ++E RLR  + EL E +GD++C R  +GDE+GE E+A+R++F
Sbjct: 301 DKGKDEEVRVKPEEVSKERRLRDGMRELRESVGDMDCRRLMVGDEIGEVEQADRTAF 357

[Close]

BLAST of Lsi08G003120 vs. NCBI nr
Match: PON95526.1 (hypothetical protein TorRG33x02_086720 [Trema orientale])

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-04
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 267 EVANKISELASNRVVVEGAECGDEGSDNEVRMKSEEGAEEWRLRKSLGELGECIGDVNCG 326
           E  ++I +LA +  VVEG E GDE  D E R++ EEGAEE  L +  GEL E +GDV   
Sbjct: 12  ESGDEIGDLAGDGGVVEGGESGDERGDEEERVEGEEGAEEGGLGEGDGELRESVGDVESR 71

Query: 327 REGIGDEV 335
              +GDEV
Sbjct: 72  GVRVGDEV 79

The following BLAST results are available for this feature:

BLAST of Lsi08G003120 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G003120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5C3T5	3.3e-17	48.09	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A4V3WKS8	1.0e-05	50.88	Epimerase domain-containing protein OS=Camellia sinensis var. sinensis OX=542762...	[more]
A0A2P5FCN1	2.5e-04	48.53	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_086720 PE=4 SV...	[more]

BLAST of Lsi08G003120 vs. NCBI nr


Match Name	E-value	Identity	Description
PON55722.1	6.8e-17	48.09	hypothetical protein PanWU01x14_186740, partial [Parasponia andersonii]	[more]
KAG4920821.1	9.2e-06	47.95	hypothetical protein JHK86_049634 [Glycine max]	[more]
KAG4935460.1	9.2e-06	47.95	hypothetical protein JHK85_050379 [Glycine max] >KAG5090984.1 hypothetical prote...	[more]
THG02007.1	2.1e-05	50.88	hypothetical protein TEA_002573 [Camellia sinensis var. sinensis]	[more]
PON95526.1	5.1e-04	48.53	hypothetical protein TorRG33x02_086720 [Trema orientale]	[more]

BLAST of Lsi08G003120 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G003120.1	Lsi08G003120.1	mRNA