Lsi08G003010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G003010
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 7922913 .. 7923462 (+)
RNA-Seq ExpressionLsi08G003010
SyntenyLsi08G003010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGGGCTCTCAACAGATTTCAGTGCTGCCTGACTCAGTTCTCGGGGAAATCCATACCAGGTCCTGAACTTCAGAGGTCTATATAAAATCCTCGGTATGCTTCTGTGCCCTGATTCTTCTTCCTTTGCCATCTTCTTCCTCTTCTGGTTGTGAATTCTTAGGCTTTTCTTCTCTTGATTGATATCAATAACTTCAATTTCGCCCAATGATGGAAAATCACTATGAATTGAATGGTTGCAGATGGCTTTGCTCGTCATTAGCCTTTTCTTAACTCCAACTCCACCATCACCTCCTCTTTCATTCAATCCATACATCTAATTGCACTCACATCACTGTTTGTAAAGGCTTTTGATGAATGAACGCCATTTGCTTGTGTATGATTCTATTAAAGCTATGAGATCTGAGGGCTTTGCTTCTATACTGCTTTGTTCTAGGTTTTGTTGTTCTTTGGTTTGTGTATTGCTTGTTTTCTTGAATTTGGGGCAGCTTCTCACTGCAATTCTTATGAAAATGCAGCCTAGGAAGCAGATAATTCCACCCGTTTGA

mRNA sequence

ATGCTTGGGGCTCTCAACAGATTTCAGTGCTGCCTGACTCAGTTCTCGGGGAAATCCATACCAGGTCCTGAACTTCAGAGGCTTTTGATGAATGAACGCCATTTGCTTGTGTATGATTCTATTAAAGCTATGAGATCTGAGGGCTTTGCTTCTATACTGCTTTGTTCTAGGTTTTGTTGTTCTTTGGTTTGTGTATTGCTTGTTTTCTTGAATTTGGGGCAGCTTCTCACTGCAATTCTTATGAAAATGCAGCCTAGGAAGCAGATAATTCCACCCGTTTGA

Coding sequence (CDS)

ATGCTTGGGGCTCTCAACAGATTTCAGTGCTGCCTGACTCAGTTCTCGGGGAAATCCATACCAGGTCCTGAACTTCAGAGGCTTTTGATGAATGAACGCCATTTGCTTGTGTATGATTCTATTAAAGCTATGAGATCTGAGGGCTTTGCTTCTATACTGCTTTGTTCTAGGTTTTGTTGTTCTTTGGTTTGTGTATTGCTTGTTTTCTTGAATTTGGGGCAGCTTCTCACTGCAATTCTTATGAAAATGCAGCCTAGGAAGCAGATAATTCCACCCGTTTGA

Protein sequence

MLGALNRFQCCLTQFSGKSIPGPELQRLLMNERHLLVYDSIKAMRSEGFASILLCSRFCCSLVCVLLVFLNLGQLLTAILMKMQPRKQIIPPV
Homology
[Close]
BLAST of Lsi08G003010 vs. ExPASy TrEMBL
Match: A0A0A0KE55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044020 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.7e-16
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 30 MNERHLL--VYDSIKAMRSEGFASILLCSRFCCSLVCVLLVFLNLGQLLTAILMKMQPRK 89
          MNE  LL   YDSIKAMRSEGFAS+L  SRFCCSLVC++LVFL+LGQ L A+LMKMQ RK
Sbjct: 1  MNEHRLLCTAYDSIKAMRSEGFASVLFYSRFCCSLVCLVLVFLDLGQFLNAVLMKMQHRK 60

Query: 90 QIIPP 93
          QIIPP
Sbjct: 61 QIIPP 65

[Close]
BLAST of Lsi08G003010 vs. NCBI nr
Match: KGN46021.1 (hypothetical protein Csa_004954 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 9.7e-16
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 30 MNERHLL--VYDSIKAMRSEGFASILLCSRFCCSLVCVLLVFLNLGQLLTAILMKMQPRK 89
          MNE  LL   YDSIKAMRSEGFAS+L  SRFCCSLVC++LVFL+LGQ L A+LMKMQ RK
Sbjct: 1  MNEHRLLCTAYDSIKAMRSEGFASVLFYSRFCCSLVCLVLVFLDLGQFLNAVLMKMQHRK 60

Query: 90 QIIPP 93
          QIIPP
Sbjct: 61 QIIPP 65

The following BLAST results are available for this feature:
BLAST of Lsi08G003010 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G003010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE554.7e-1676.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044020 PE=4 SV=1[more]
BLAST of Lsi08G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46021.19.7e-1676.92hypothetical protein Csa_004954 [Cucumis sativus][more]
BLAST of Lsi08G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G003010.1Lsi08G003010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane