Lsi08G003000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G003000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 7922865 .. 7923230 (-)
RNA-Seq ExpressionLsi08G003000
SyntenyLsi08G003000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGATTGAATGAAAGAGGAGGTGATGGTGGAGTTGGAGTTAAGAAAAGGCTAATGACGAGCAAAGCCATCTGCAACCATTCAATTCATAGTGATTTTCCATCATTGGGCGAAATTGAAGTTATTGATATCAATCAAGAGAAGAAAAGCCTAAGAATTCACAACCAGAAGAGGAAGAAGATGGCAAAGGAAGAAGAATCAGGGCACAGAAGCATACCGAGGATTTTATATAGACCTCTGAAGTTCAGGACCTGGTATGGATTTCCCCGAGAACTGAGTCAGGCAGCACTGAAATCTGTTGAGAGCCCCAAGCATCGTAGAATGCAACTAAAGGCCCAATTCATAGTTATGGACCGCGCCTGA

mRNA sequence

ATGTATGGATTGAATGAAAGAGGAGGTGATGGTGGAGTTGGAGTTAAGAAAAGGCTAATGACGAGCAAAGCCATCTGCAACCATTCAATTCATAGTGATTTTCCATCATTGGGCGAAATTGAAGTTATTGATATCAATCAAGAGAAGAAAAGCCTAAGAATTCACAACCAGAAGAGGAAGAAGATGGCAAAGGAAGAAGAATCAGGGCACAGAAGCATACCGAGGATTTTATATAGACCTCTGAAGTTCAGGACCTGGTATGGATTTCCCCGAGAACTGAGTCAGGCAGCACTGAAATCTGTTGAGAGCCCCAAGCATCGTAGAATGCAACTAAAGGCCCAATTCATAGTTATGGACCGCGCCTGA

Coding sequence (CDS)

ATGTATGGATTGAATGAAAGAGGAGGTGATGGTGGAGTTGGAGTTAAGAAAAGGCTAATGACGAGCAAAGCCATCTGCAACCATTCAATTCATAGTGATTTTCCATCATTGGGCGAAATTGAAGTTATTGATATCAATCAAGAGAAGAAAAGCCTAAGAATTCACAACCAGAAGAGGAAGAAGATGGCAAAGGAAGAAGAATCAGGGCACAGAAGCATACCGAGGATTTTATATAGACCTCTGAAGTTCAGGACCTGGTATGGATTTCCCCGAGAACTGAGTCAGGCAGCACTGAAATCTGTTGAGAGCCCCAAGCATCGTAGAATGCAACTAAAGGCCCAATTCATAGTTATGGACCGCGCCTGA

Protein sequence

MYGLNERGGDGGVGVKKRLMTSKAICNHSIHSDFPSLGEIEVIDINQEKKSLRIHNQKRKKMAKEEESGHRSIPRILYRPLKFRTWYGFPRELSQAALKSVESPKHRRMQLKAQFIVMDRA
Homology
[Close]
BLAST of Lsi08G003000 vs. ExPASy TrEMBL
Match: A0A0A0K8H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 10 DGGVGVKKRLMTSKAICNHSIHSDFPSLGEIEVIDINQEKKSLRIHNQKRKK 62
          DGG G KKRLM +KAICN SI+ DFPSLG+ EV +INQ+KKSLRI++QK KK
Sbjct: 28 DGG-GDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKK 78

[Close]
BLAST of Lsi08G003000 vs. NCBI nr
Match: KAE8646628.1 (hypothetical protein Csa_023588, partial [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 6  ERGGDGGVGVKKRLMTSKAICNHSIHSDFPSLGEIEVIDINQEKKSLRIHNQKRKK 62
          ERGGDG  G KKRLM +KAICN SI+ DFPSLG+ EV +INQ+KKSLRI++QK KK
Sbjct: 3  ERGGDGRGGDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKK 58

The following BLAST results are available for this feature:
BLAST of Lsi08G003000 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G003000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8H89.5e-0971.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1[more]
BLAST of Lsi08G003000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646628.15.5e-1171.43hypothetical protein Csa_023588, partial [Cucumis sativus][more]
BLAST of Lsi08G003000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G003000.1Lsi08G003000.1mRNA