Lsi08G002990 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G002990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr08: 7920104 .. 7920912 (-)
RNA-Seq Expression	Lsi08G002990
Synteny	Lsi08G002990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGGTAAAAGAAATTTTCTTATACAACTTGAAATCACAAACTGACAAAAAAGAGAAAACAAAGTGTTATTGTAGTTGAAAGTTCAAACAAAAGCAATGGAAGCTTTGGCTTGAAAGAACAGAAAGAACCAAACAAGGAAACAAAGATAACAATTAAACACAACAAAGACATTAACGTATTAGTTTTAACAAATACACACAACCCAGTAACAACAAGGAGTTCAAACCGGTGGAATTATCTACTTCCTAGGCTACCTTTGCATAAGAATTACAGTGCGAATCTTCCCCAAATCCAGTGAATCTATCATCTACAACTAGACCAACAAAACCAAAAAAAACAAGCAACAGACCAACAAAACCAAGGACAAAACAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTAACAGAATCATATACGGTATAAAGCAAACGACATTCTTTCATCAAAAGCCTTTACCAACAGTGATGTGTGTGCGATTAGATGTATGGATTGAATGAAAGAGGAGGTGATGGTGGAGGTGGAGATGAGTAAAGGCTAATTAATGAAGAACAAAGCCATCTGCAACCATTCAATACGAAATGATTTTCCATCACTGGGCGAAATTGAAGCTACTAATATCAATCAATCAAGAGTAAAAAAGAAAAGATAAGAAAAGCCTAGGAATTCACAGCCAGAAGAGGAAGAAGACGGCGAAGCAAGAAAAATTAGGGCACAGAAGCATACCGAGGATTTTATAGAGAGCTCTAATGTCCATGATTGGTATGGATTTCGCCATGAACTGGGAGACAGGCGGCACTGA

mRNA sequence

ATGAATTTGTGCGAATCTTCCCCAAATCCAGTGAATCTATCATCTACAACTAGACCAACAAAACCAAAAAAAACAAGCAACAGACCAACAAAACCAAGGACAAAACAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTAACAGAATCATATACGGTATAAAGCAAACGACATTCTTTCATCAAAAGCCTTTACCAACAGTGATGTGTGTGCGATTAGATAACAAAGCCATCTGCAACCATTCAATACGAAATGATTTTCCATCACTGGGCGAAATTGAAGCTACTAATATCAATCAATCAAGACCAGAAGAGGAAGAAGACGGCGAAGCAAGAAAAATTAGGGCACAGAAGCATACCGAGGATTTTATAGAGAGCTCTAATGTCCATGATTGGTATGGATTTCGCCATGAACTGGGAGACAGGCGGCACTGA

Coding sequence (CDS)

ATGAATTTGTGCGAATCTTCCCCAAATCCAGTGAATCTATCATCTACAACTAGACCAACAAAACCAAAAAAAACAAGCAACAGACCAACAAAACCAAGGACAAAACAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTAACAGAATCATATACGGTATAAAGCAAACGACATTCTTTCATCAAAAGCCTTTACCAACAGTGATGTGTGTGCGATTAGATAACAAAGCCATCTGCAACCATTCAATACGAAATGATTTTCCATCACTGGGCGAAATTGAAGCTACTAATATCAATCAATCAAGACCAGAAGAGGAAGAAGACGGCGAAGCAAGAAAAATTAGGGCACAGAAGCATACCGAGGATTTTATAGAGAGCTCTAATGTCCATGATTGGTATGGATTTCGCCATGAACTGGGAGACAGGCGGCACTGA

Protein sequence

MNLCESSPNPVNLSSTTRPTKPKKTSNRPTKPRTKQYRSKALRSHSFNRIIYGIKQTTFFHQKPLPTVMCVRLDNKAICNHSIRNDFPSLGEIEATNINQSRPEEEEDGEARKIRAQKHTEDFIESSNVHDWYGFRHELGDRRH

Homology

[Close]

BLAST of Lsi08G002990 vs. ExPASy TrEMBL
Match: A0A0A0K8H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.8e-05
Identity = 41/101 (40.59%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 59  FFHQKPLPTVMCVRLD--------------------NKAICNHSIRNDFPSLGEIEATNI 118
           F HQKPL TVMCVRLD                    NKAICN SI  DFPSLG+ E  NI
Sbjct: 3   FVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVPNI 62

Query: 119 NQSRPEEEEDGEARKIRAQKHTEDFIESSNVHDWYGFRHEL 140
           NQ       D ++ +I +QK  +   ++     + GF  EL
Sbjct: 63  NQ-------DKKSLRIYSQKSKK---KNQGTKAYEGFYREL 93

The following BLAST results are available for this feature:

BLAST of Lsi08G002990 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G002990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8H8	5.8e-05	40.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1	[more]

BLAST of Lsi08G002990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi08G002990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G002990.1	Lsi08G002990.1	mRNA