Lsi08G002880 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G002880
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCytochrome c biogenesis CcmF C-terminal-like mitochondrial protein
Locationchr08: 7375214 .. 7375660 (-)
RNA-Seq ExpressionLsi08G002880
SyntenyLsi08G002880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGTACGAAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATCCCGCATCCAACCAAGTCTTTGACCAGGGAACAGGAGAATTCCCACTACCGCTCTTGCTGACGGTTGGGGTAACTCGGCTTTACGCGTTGTCTCTTTTCCGTTGCTCTCGTAGCAAAGCTACTAGTCCAAAAGCCAGAAGCCGAAGGCTAATGACACTAGCTAACCAACTAAGAGAGCTGCCCTAGATGAATTGTTGCGGAAAGAGCGGATACCACTATGTTAGCTGCCTCCTTTGCTGCGGGAGCGACAGAAAAGAGTCAGGATATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCAGCCCGGACGGTGGAAGAGTCAGGGGAGGCCGGGTCATTTGACGGAAATGGAAGCCTTTTTTCCTATTAA

mRNA sequence

CGGTACGAAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATCCCGCATCCAACCAAGTCTTTGACCAGGGAACAGGAGAATTCCCACTACCGCTCTTGCTGACGGTTGGGAGAGCTGCCCTAGATGAATTGTTGCGGAAAGAGCGGATACCACTATGTGGTCTACGAGCTGCTGCAGCCCGGACGGTGGAAGAGTCAGGGGAGGCCGGGTCATTTGACGGAAATGGAAGCCTTTTTTCCTATTAA

Coding sequence (CDS)

CGGTACGAAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATCCCGCATCCAACCAAGTCTTTGACCAGGGAACAGGAGAATTCCCACTACCGCTCTTGCTGACGGTTGGGAGAGCTGCCCTAGATGAATTGTTGCGGAAAGAGCGGATACCACTATGTGGTCTACGAGCTGCTGCAGCCCGGACGGTGGAAGAGTCAGGGGAGGCCGGGTCATTTGACGGAAATGGAAGCCTTTTTTCCTATTAA

Protein sequence

RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIPLCGLRAAAARTVEESGEAGSFDGNGSLFSY
Homology
[Close]
BLAST of Lsi08G002880 vs. ExPASy TrEMBL
Match: A0A314LGK4 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_63613 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-14
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR 46
          RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR
Sbjct: 23 RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLAGQPGR 67

[Close]
BLAST of Lsi08G002880 vs. ExPASy TrEMBL
Match: A0A371IH26 (Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CCMFC PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.2e-14
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1   RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP 59
           RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR      L K+  P
Sbjct: 330 RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLEGQPGRERGGNGLPKKPAP 387

[Close]
BLAST of Lsi08G002880 vs. ExPASy TrEMBL
Match: Q6RUR5 (Zinc finger protein OS=Populus euphratica OX=75702 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-13
Identity = 42/58 (72.41%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP 59
          RYEKRGRDDIIYVRTAPRGVDPAS QVFDQGTG+FPLPL    GR      L K+  P
Sbjct: 40 RYEKRGRDDIIYVRTAPRGVDPASTQVFDQGTGKFPLPLAGQPGRERGGNGLPKKPAP 97

[Close]
BLAST of Lsi08G002880 vs. ExPASy TrEMBL
Match: A0A1R3KTZ4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04429 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.6e-13
Identity = 42/58 (72.41%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP 59
           RYEKRGRDDIIYVRTAPRGVDPAS+QVFDQGTGEFPLP     GR      L K+  P
Sbjct: 299 RYEKRGRDDIIYVRTAPRGVDPASDQVFDQGTGEFPLPQAGQPGRERGGNGLPKKPAP 356

[Close]
BLAST of Lsi08G002880 vs. ExPASy TrEMBL
Match: A0A1R3KU35 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04428 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.6e-13
Identity = 42/58 (72.41%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP 59
           RYEKRGRDDIIYVRTAPRGVDPAS+QVFDQGTGEFPLP     GR      L K+  P
Sbjct: 216 RYEKRGRDDIIYVRTAPRGVDPASDQVFDQGTGEFPLPQAGQPGRERGGNGLPKKPAP 273

[Close]
BLAST of Lsi08G002880 vs. NCBI nr
Match: OIT40703.1 (hypothetical protein A4A49_63613 [Nicotiana attenuata])

HSP 1 Score: 87.4 bits (215), Expect = 6.6e-14
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR 46
          RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR
Sbjct: 23 RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLAGQPGR 67

[Close]
BLAST of Lsi08G002880 vs. NCBI nr
Match: KAF3452199.1 (hypothetical protein FNV43_RR08297 [Rhamnella rubrinervis])

HSP 1 Score: 87.4 bits (215), Expect = 6.6e-14
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1   RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR 46
           RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR
Sbjct: 323 RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLAGQPGR 367

[Close]
BLAST of Lsi08G002880 vs. NCBI nr
Match: RDY14275.1 (Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein, partial [Mucuna pruriens])

HSP 1 Score: 87.0 bits (214), Expect = 8.6e-14
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1   RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP 59
           RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR      L K+  P
Sbjct: 330 RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLEGQPGRERGGNGLPKKPAP 387

[Close]
BLAST of Lsi08G002880 vs. NCBI nr
Match: AAR86717.1 (zinc finger protein [Populus euphratica])

HSP 1 Score: 84.0 bits (206), Expect = 7.3e-13
Identity = 42/58 (72.41%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP 59
          RYEKRGRDDIIYVRTAPRGVDPAS QVFDQGTG+FPLPL    GR      L K+  P
Sbjct: 40 RYEKRGRDDIIYVRTAPRGVDPASTQVFDQGTGKFPLPLAGQPGRERGGNGLPKKPAP 97

[Close]
BLAST of Lsi08G002880 vs. NCBI nr
Match: PPS15705.1 (hypothetical protein GOBAR_AA04875 [Gossypium barbadense])

HSP 1 Score: 83.6 bits (205), Expect = 9.5e-13
Identity = 42/58 (72.41%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP 59
          RYEKRGRDDIIYVRTAPRGVDPAS+QVFDQG GEFPLPL    GR      L K+  P
Sbjct: 25 RYEKRGRDDIIYVRTAPRGVDPASDQVFDQGIGEFPLPLAGQPGRERGGNGLPKKPAP 82

The following BLAST results are available for this feature:
BLAST of Lsi08G002880 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G002880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A314LGK43.2e-1491.11Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_63613 PE=4 SV=1[more]
A0A371IH264.2e-1475.86Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein (Fragment) OS... [more]
Q6RUR53.5e-1372.41Zinc finger protein OS=Populus euphratica OX=75702 PE=2 SV=1[more]
A0A1R3KTZ44.6e-1372.41Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04429 PE=4 SV=1[more]
A0A1R3KU354.6e-1372.41Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04428 PE=4 SV=1[more]
BLAST of Lsi08G002880 vs. NCBI nr
Match NameE-valueIdentityDescription
OIT40703.16.6e-1491.11hypothetical protein A4A49_63613 [Nicotiana attenuata][more]
KAF3452199.16.6e-1491.11hypothetical protein FNV43_RR08297 [Rhamnella rubrinervis][more]
RDY14275.18.6e-1475.86Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein, partial [Muc... [more]
AAR86717.17.3e-1372.41zinc finger protein [Populus euphratica][more]
PPS15705.19.5e-1372.41hypothetical protein GOBAR_AA04875 [Gossypium barbadense][more]
BLAST of Lsi08G002880 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G002880.1Lsi08G002880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
cellular_component GO:0016020 membrane