Lsi08G002370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G002370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP synthase subunit delta, chloroplastic
Location	chr08: 5218543 .. 5219265 (+)
RNA-Seq Expression	Lsi08G002370
Synteny	Lsi08G002370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCGGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACCGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCGGCCTCGAACAACACGCTGGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTCGCAGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTGCCATCGAGAAGAAACTCGCAGTGGTGGATGAGATCGCTTCCTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACTCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTCGAATTGGTGTACAACAAGATTACGAACACAGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCAAAGAATGTGAGGATAAAGACGCAGATCGATCCAAGTCTTGTAGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTCAAGAAACAGCTTGAGGAGATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATAA

mRNA sequence

ATGGCCGCTCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCGGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACCGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCGGCCTCGAACAACACGCTGGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTCGCAGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTGCCATCGAGAAGAAACTCGCAGTGGTGGATGAGATCGCTTCCTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACTCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTCGAATTGGTGTACAACAAGATTACGAACACAGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCAAAGAATGTGAGGATAAAGACGCAGATCGATCCAAGTCTTGTAGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTCAAGAAACAGCTTGAGGAGATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATAA

Coding sequence (CDS)

ATGGCCGCTCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCGGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACCGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCGGCCTCGAACAACACGCTGGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTCGCAGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTGCCATCGAGAAGAAACTCGCAGTGGTGGATGAGATCGCTTCCTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACTCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTCGAATTGGTGTACAACAAGATTACGAACACAGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCAAAGAATGTGAGGATAAAGACGCAGATCGATCCAAGTCTTGTAGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTCAAGAAACAGCTTGAGGAGATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATAA

Protein sequence

MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSSLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV

Homology

[Close]

BLAST of Lsi08G002370 vs. ExPASy Swiss-Prot
Match: Q9SSS9 (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATPD PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.5e-68
Identity = 148/240 (61.67%), Postives = 190/240 (79.17%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLP-TVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAG 60
           MA+L QT  SLQ+KL P + + +R+ P+      TFP   +R+ +  +  GA+MSATAA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLR----KTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSS 120
           SYA ALA+VA  N+T++ T +D+EK+E VF+D QV +FFANPTI +EKK  V+D+I  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAK 180
           SLQ H++NFL +LVD+ RI+I+ EIV EFELVYNK+T+T+LA V SVV+LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

[Close]

BLAST of Lsi08G002370 vs. ExPASy Swiss-Prot
Match: P32980 (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 8.5e-67
Identity = 147/248 (59.27%), Postives = 187/248 (75.40%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSA--TFPSRGLRLGHHRSH------GGAK 60
           MAAL QT  + Q++  P  +        LSFS     P   ++L  +R+        G+K
Sbjct: 1   MAALQQTPITFQSRSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRTSRRGGGAAGSK 60

Query: 61  MSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVV 120
           M A+AAGSYA ALA++A SN TL+ T++D+EKIE +  D  VF+FF +P +  EKK  +V
Sbjct: 61  MVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELV 120

Query: 121 DEIASSSSLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQ 180
           DEI SSSS+QPH ANFL ILVD KR++++KEIV EFE VYN +T+TELAVV+SVV+LE Q
Sbjct: 121 DEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQ 180

Query: 181 HLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLD 240
           HLAQIAK VQ+L+G+KNVRIKT ID SLVAGFT+R+GNSGSKLID+SVKKQLE+IAAQL+
Sbjct: 181 HLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVKKQLEDIAAQLE 240

[Close]

BLAST of Lsi08G002370 vs. ExPASy Swiss-Prot
Match: Q02758 (ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.3e-64
Identity = 146/252 (57.94%), Postives = 191/252 (75.79%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLP--TVRFSRTTPVNLSFSATFPSRGLRL-------GHHRSHG-- 60
           MA+L  T ASL +K +P  T   +R   +NLS S+TF S  L+L          RS G  
Sbjct: 1   MASLQHTTASLHSKHIPKTTNILTRKPILNLS-SSTFYSPKLKLKLKLPLTKTRRSTGGA 60

Query: 61  -GAKMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKK 120
            GA+MS+ AAGSYAAALA++A SNNTLDA ++D +KIE +F+D +VFD+F++P +    K
Sbjct: 61  LGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTK 120

Query: 121 LAVVDEIASSSSLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQ 180
             ++ E A++S  QPH+ NFL +L+DSKRID++ +I+ EFE VYN +T+TEL VV+SVV+
Sbjct: 121 RQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVK 180

Query: 181 LEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA 240
           LE  HLAQIAKQVQKL+GAK VR KT +DPSLVAGFTVR+GN+GSK ID+SVK++LEEIA
Sbjct: 181 LESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIA 240

[Close]

BLAST of Lsi08G002370 vs. ExPASy Swiss-Prot
Match: P11402 (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=1 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 3.8e-59
Identity = 137/249 (55.02%), Postives = 182/249 (73.09%), Query Frame = 0


Query: 3   ALHQTAASLQAKLLPTVRFSRTTPVNLSFS---ATFPSRGLRL-----GHHRSHGGA--- 62
           AL     +  A L  +   S   P +LSFS   ATF    L++        +  GGA   
Sbjct: 9   ALQSRTTTAVAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGT 68

Query: 63  KMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAV 122
           +M  + A  YA+ALA+VA    TL+AT+SDVEK+  +F++  V+ FFANP I+I+ K +V
Sbjct: 69  RMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSV 128

Query: 123 VDEIASSSSLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQ 182
           +DEI ++S LQPH+ANF+ IL+DS+RI+++KEI+ EFE V+NKIT TE+AVV+SVV+LE 
Sbjct: 129 LDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLEN 188

Query: 183 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQL 241
            HLAQIAK VQK++GAKNVRIKT IDPSLVAGFT+R+GN GSKL+D+SVKKQLEEIAAQL
Sbjct: 189 DHLAQIAKGVQKITGAKNVRIKTVIDPSLVAGFTIRYGNEGSKLVDMSVKKQLEEIAAQL 248

[Close]

BLAST of Lsi08G002370 vs. ExPASy Swiss-Prot
Match: Q07300 (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.8e-51
Identity = 122/247 (49.39%), Postives = 165/247 (66.80%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATF--PSRG---LRLGHHRSHGG--AKM 60
           MAAL   + +L+         S         SA+F   +RG   LRL   R  G      
Sbjct: 1   MAALRLASFTLRPAAAAAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPR 60

Query: 61  SATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVD 120
           +  AA SYA+AL+EVA  N TL+ T SD+EK++ +FAD  V +FF NPT+  E+K A++D
Sbjct: 61  AEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALID 120

Query: 121 EIASSSSLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQH 180
           EIA S  LQPH  NF+ ++VD+ R  IL EIV EFE ++N +T TE+A V+SVVQLE Q 
Sbjct: 121 EIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQD 180

Query: 181 LAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDL 240
           LAQIA+ VQK++GAKNVR+KTQ+DP L+AGFTV++G  GS LID+SV+KQ+EEI ++ +L
Sbjct: 181 LAQIAQHVQKMTGAKNVRLKTQLDPELIAGFTVQYGRDGSSLIDMSVRKQIEEITSEFEL 240

[Close]

BLAST of Lsi08G002370 vs. ExPASy TrEMBL
Match: A0A5A7T0I4 (ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00020 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 229/240 (95.42%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQTAASLQAKLLPT R SRTTPVNLSFSATFPSRGLRLG HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD QV DFF+NPTI++EKK AVVDEIASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVD+KRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. ExPASy TrEMBL
Match: A0A1S3CIB5 (ATP synthase subunit delta, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501306 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 229/240 (95.42%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQTAASLQAKLLPT R SRTTPVNLSFSATFPSRGLRLG HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD QV DFF+NPTI++EKK AVVDEIASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVD+KRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. ExPASy TrEMBL
Match: A0A0A0K7Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016970 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.0e-111
Identity = 227/240 (94.58%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQT ASLQAKLLPT R SRTTPVNLSFSATFPSRGLRL  HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD +VFDFFANPTI++EKK AVVDE+ASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVD+KRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. ExPASy TrEMBL
Match: A0A6J1I8U4 (ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111472044 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.7e-107
Identity = 219/240 (91.25%), Postives = 229/240 (95.42%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAA HQTAASLQAKLLPT+R SRTTP NLSFSATFPS  LRLG HRSHGGA+MSA+AAGS
Sbjct: 1   MAAFHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQHRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFADSQVFD FANPTI+IEKKLA+VDEIA+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVD+KRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. ExPASy TrEMBL
Match: A0A6J1EC71 (ATP synthase subunit delta, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432727 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.3e-106
Identity = 219/240 (91.25%), Postives = 229/240 (95.42%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQTAASLQAKLLPT+R SRTTP NLSFSATF S  LRLG HRSHGGA+MSA+AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFADSQVFD FANPTI+IEKKLA+VDEIA+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVD+KRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. NCBI nr
Match: XP_038884002.1 (ATP synthase subunit delta, chloroplastic [Benincasa hispida])

HSP 1 Score: 422.2 bits (1084), Expect = 3.1e-114
Identity = 231/240 (96.25%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQTAASLQAKLLPT+R SRTTPVNLSFSATFPSR LRLGHHRSHGGAKMSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPVNLSFSATFPSRSLRLGHHRSHGGAKMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTI +EKKL VVDEIA+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIGVEKKLEVVDEIATSSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVD+KRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQ+DLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQIDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. NCBI nr
Match: XP_008463069.1 (PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis melo] >KAA0034975.1 ATP synthase subunit delta [Cucumis melo var. makuwa] >TYK02317.1 ATP synthase subunit delta [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 2.9e-112
Identity = 229/240 (95.42%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQTAASLQAKLLPT R SRTTPVNLSFSATFPSRGLRLG HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD QV DFF+NPTI++EKK AVVDEIASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVD+KRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. NCBI nr
Match: XP_004138373.1 (ATP synthase subunit delta, chloroplastic [Cucumis sativus] >KGN45880.1 hypothetical protein Csa_004890 [Cucumis sativus])

HSP 1 Score: 411.8 bits (1057), Expect = 4.2e-111
Identity = 227/240 (94.58%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQT ASLQAKLLPT R SRTTPVNLSFSATFPSRGLRL  HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD +VFDFFANPTI++EKK AVVDE+ASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVD+KRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. NCBI nr
Match: XP_023534996.1 (ATP synthase subunit delta, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.8e-107
Identity = 220/240 (91.67%), Postives = 231/240 (96.25%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAALHQTAASLQAKLLPT+R SRTTP NLSFSATFPS  LRLG +RSHGGA+MSA+AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQYRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFADSQVFDFFANPTI+IEKKLA+VDEIA+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDFFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVD+KRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVALEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. NCBI nr
Match: XP_022973506.1 (ATP synthase subunit delta, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 396.7 bits (1018), Expect = 1.4e-106
Identity = 219/240 (91.25%), Postives = 229/240 (95.42%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGS 60
           MAA HQTAASLQAKLLPT+R SRTTP NLSFSATFPS  LRLG HRSHGGA+MSA+AAGS
Sbjct: 1   MAAFHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQHRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFADSQVFD FANPTI+IEKKLA+VDEIA+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVD+KRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of Lsi08G002370 vs. TAIR 10
Match: AT4G09650.1 (ATP synthase delta-subunit gene )

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-69
Identity = 148/240 (61.67%), Postives = 190/240 (79.17%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLP-TVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAG 60
           MA+L QT  SLQ+KL P + + +R+ P+      TFP   +R+ +  +  GA+MSATAA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLR----KTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSS 120
           SYA ALA+VA  N+T++ T +D+EK+E VF+D QV +FFANPTI +EKK  V+D+I  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAK 180
           SLQ H++NFL +LVD+ RI+I+ EIV EFELVYNK+T+T+LA V SVV+LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

The following BLAST results are available for this feature:

BLAST of Lsi08G002370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSS9	3.5e-68	61.67	ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATP...	[more]
P32980	8.5e-67	59.27	ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=...	[more]
Q02758	2.3e-64	57.94	ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV...	[more]
P11402	3.8e-59	55.02	ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=...	[more]
Q07300	3.8e-51	49.39	ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 ...	[more]

BLAST of Lsi08G002370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0I4	1.4e-112	95.42	ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CIB5	1.4e-112	95.42	ATP synthase subunit delta, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350130...	[more]
A0A0A0K7Z3	2.0e-111	94.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016970 PE=3 SV=1	[more]
A0A6J1I8U4	6.7e-107	91.25	ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EC71	3.3e-106	91.25	ATP synthase subunit delta, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Lsi08G002370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884002.1	3.1e-114	96.25	ATP synthase subunit delta, chloroplastic [Benincasa hispida]	[more]
XP_008463069.1	2.9e-112	95.42	PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis melo] >KAA0034975....	[more]
XP_004138373.1	4.2e-111	94.58	ATP synthase subunit delta, chloroplastic [Cucumis sativus] >KGN45880.1 hypothet...	[more]
XP_023534996.1	2.8e-107	91.67	ATP synthase subunit delta, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022973506.1	1.4e-106	91.25	ATP synthase subunit delta, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Lsi08G002370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09650.1	2.5e-69	61.67	ATP synthase delta-subunit gene	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PRINTS	PR00125	ATPASEDELTA	coord: 206..224 score: 35.66 coord: 188..203 score: 36.41 coord: 57..76 score: 39.12 coord: 137..151 score: 28.33 coord: 126..137 score: 41.04
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 58..231 e-value: 5.2E-41 score: 140.6
IPR000711	ATPase, OSCP/delta subunit	TIGRFAM	TIGR01145	TIGR01145	coord: 58..231 e-value: 1.9E-36 score: 123.8
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 47..239
IPR000711	ATPase, OSCP/delta subunit	HAMAP	MF_01416	ATP_synth_delta_bact	coord: 53..233 score: 18.083664
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	GENE3D	1.10.520.20		coord: 57..149 e-value: 2.0E-21 score: 78.4
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	SUPERFAMILY	47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 54..157
None	No IPR available	PANTHER	PTHR11910:SF18	BNACNNG66500D PROTEIN	coord: 47..239
IPR020781	ATPase, OSCP/delta subunit, conserved site	PROSITE	PS00389	ATPASE_DELTA	coord: 190..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G002370.1	Lsi08G002370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0009409	response to cold
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0010319	stromule
cellular_component	GO:0016020	membrane
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism